Articles | Volume 14, issue 9
https://doi.org/10.5194/essd-14-4339-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/essd-14-4339-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Data description paper
| 
22 Sep 2022
Data description paper |
| 22 Sep 2022
| 22 Sep 2022
The biogeography of relative abundance of soil fungi versus bacteria in surface topsoil
Kailiang Yu
CORRESPONDING AUTHOR
Institute of Integrative Biology, ETH Zürich, Zürich,
Switzerland
Johan van den Hoogen
Institute of Integrative Biology, ETH Zürich, Zürich,
Switzerland
Zhiqiang Wang
Sichuan Zoige Alpine Wetland Ecosystem National Observation and Research Station, Institute of Qinghai-Tibetan Plateau, Southwest Minzu University, Chengdu, China
Colin Averill
Institute of Integrative Biology, ETH Zürich, Zürich,
Switzerland
Devin Routh
Institute of Integrative Biology, ETH Zürich, Zürich,
Switzerland
Gabriel Reuben Smith
Department of Biology, Stanford University, Stanford, California, USA
Institute of Integrative Biology, ETH Zürich, Zürich,
Switzerland
Rebecca E. Drenovsky
Biology Department, John Carroll University, University Heights, Ohio, USA
Kate M. Scow
Department of Land, Air and Water Resources, University of California,
Davis, California, USA
Fei Mo
College of Agronomy, Northwest A&F University, Shaanxi, China
Mark P. Waldrop
U.S. Geological Survey, Geology, Minerals, Energy, and Geophysics
Science Center, Menlo Park, California, USA
Yuanhe Yang
State Key Laboratory of Vegetation and Environmental Change, Institute
of Botany, Chinese Academy of Sciences, Beijing, China
Weize Tang
South China Botanical Garden, University of Chinese Academy of Sciences, Beijing, China
Key Laboratory of Vegetation Restoration and Management of Degraded
Ecosystems, South China Botanical Garden, Chinese Academy of Sciences,
Guangzhou, China
Franciska T. De Vries
Institute of Biodiversity and Ecosystem Dynamics, University of
Amsterdam, Amsterdam, the Netherlands
Richard D. Bardgett
Department of Earth and Environmental Sciences, University of
Manchester, Oxford Road, Manchester, UK
Peter Manning
Department of Biological Sciences, University of Bergen, Bergen, Norway
Felipe Bastida
CEBAS-CSIC, Department of Soil and Water Conservation, Campus
Universitario de Espinardo, Murcia, Spain
Sara G. Baer
Kansas Biological Survey and Department of Ecology & Evolutionary
Biology, University of Kansas, Lawrence, Kansas, USA
Elizabeth M. Bach
The Nature Conservancy, Nachusa Grasslands, Franklin Grove, IL, USA
Carlos García
CEBAS-CSIC, Department of Soil and Water Conservation, Campus
Universitario de Espinardo, Murcia, Spain
Qingkui Wang
Huitong Experimental Station of Forest Ecology, CAS Key Laboratory of
Forest Ecology and Management, Institute of Applied Ecology, Shenyang,
China
Linna Ma
State Key Laboratory of Vegetation and Environmental Change, Institute
of Botany, Chinese Academy of Sciences, Beijing, China
Baodong Chen
State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China
College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, China
Xianjing He
Key Laboratory of the Three Gorges Reservoir Region's
Eco-Environment, Ministry of Education, Chongqing University, Chongqing,
China
Sven Teurlincx
Department of Aquatic Ecology, Netherlands Institute of Ecology
(NIOO-KNAW), Wageningen, the Netherlands
Amber Heijboer
Biometris, Wageningen University & Research, Wageningen,
the Netherlands
Ecology and Biodiversity Group, Department of Biology, Institute of
Environmental Biology, Utrecht University, Padualaan, the Netherlands
James A. Bradley
School of Geography, Queen Mary University of London, London, E1 4NS,
UK
Thomas W. Crowther
CORRESPONDING AUTHOR
Institute of Integrative Biology, ETH Zürich, Zürich,
Switzerland
Related authors
No articles found.
Jing-li Lu, Thomas W. Crowther, Manuel Delgado-Baquerizo, Wenjie Liu, Yamin Jiang, Hongyang Sun, and Zhiqiang Wang
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2025-229, https://doi.org/10.5194/essd-2025-229, 2025
Preprint under review for ESSD
Short summary
Short summary
We used a global dataset to examine patterns and drivers of fungal necromass C (FNC), bacterial necromass C (BNC), and their ratio across agricultural and natural ecosystems. FNC contributed about twice as much as BNC to SOC in both systems, with higher contributions overall in agricultural soils. Soil C/N and clay content mainly drove FNC and BNC contributions, while elevation primarily influenced the FNC/BNC ratio.
Martin Thurner, Kailiang Yu, Stefano Manzoni, Anatoly Prokushkin, Melanie A. Thurner, Zhiqiang Wang, and Thomas Hickler
Biogeosciences, 22, 1475–1493, https://doi.org/10.5194/bg-22-1475-2025, https://doi.org/10.5194/bg-22-1475-2025, 2025
Short summary
Short summary
Nitrogen concentrations in tree tissues (leaves, branches, stems, and roots) are related to photosynthesis, growth, and respiration and thus to vegetation carbon uptake. Our novel database allows us to identify the controls of tree tissue nitrogen concentrations in boreal and temperate forests, such as tree age/size, species, and climate. Changes therein will affect tissue nitrogen concentrations and thus also vegetation carbon uptake.
Lei Zhang, Lin Yang, Thomas W. Crowther, Constantin M. Zohner, Sebastian Doetterl, Gerard B. M. Heuvelink, Alexandre M. J.-C. Wadoux, A.-Xing Zhu, Yue Pu, Feixue Shen, Haozhi Ma, Yibiao Zou, and Chenghu Zhou
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-618, https://doi.org/10.5194/essd-2024-618, 2025
Revised manuscript accepted for ESSD
Short summary
Short summary
Current understanding of depth-dependent variations and controls of soil organic carbon turnover time (τ) at global, biome, and local scales remain incomplete. We used the state-of-the-art soil and root profile databases and satellite observations to generate spatially-explicit new global maps of top- and subsoil τ, with quantified uncertainties for better user applications. The new insights from resulting maps facilitate modelling efforts of carbon cycle and support effective carbon management.
Anne F. Van Loon, Sarra Kchouk, Alessia Matanó, Faranak Tootoonchi, Camila Alvarez-Garreton, Khalid E. A. Hassaballah, Minchao Wu, Marthe L. K. Wens, Anastasiya Shyrokaya, Elena Ridolfi, Riccardo Biella, Viorica Nagavciuc, Marlies H. Barendrecht, Ana Bastos, Louise Cavalcante, Franciska T. de Vries, Margaret Garcia, Johanna Mård, Ileen N. Streefkerk, Claudia Teutschbein, Roshanak Tootoonchi, Ruben Weesie, Valentin Aich, Juan P. Boisier, Giuliano Di Baldassarre, Yiheng Du, Mauricio Galleguillos, René Garreaud, Monica Ionita, Sina Khatami, Johanna K. L. Koehler, Charles H. Luce, Shreedhar Maskey, Heidi D. Mendoza, Moses N. Mwangi, Ilias G. Pechlivanidis, Germano G. Ribeiro Neto, Tirthankar Roy, Robert Stefanski, Patricia Trambauer, Elizabeth A. Koebele, Giulia Vico, and Micha Werner
Nat. Hazards Earth Syst. Sci., 24, 3173–3205, https://doi.org/10.5194/nhess-24-3173-2024, https://doi.org/10.5194/nhess-24-3173-2024, 2024
Short summary
Short summary
Drought is a creeping phenomenon but is often still analysed and managed like an isolated event, without taking into account what happened before and after. Here, we review the literature and analyse five cases to discuss how droughts and their impacts develop over time. We find that the responses of hydrological, ecological, and social systems can be classified into four types and that the systems interact. We provide suggestions for further research and monitoring, modelling, and management.
Xianjin He, Laurent Augusto, Daniel S. Goll, Bruno Ringeval, Ying-Ping Wang, Julian Helfenstein, Yuanyuan Huang, and Enqing Hou
Biogeosciences, 20, 4147–4163, https://doi.org/10.5194/bg-20-4147-2023, https://doi.org/10.5194/bg-20-4147-2023, 2023
Short summary
Short summary
We identified total soil P concentration as the most important predictor of all soil P pool concentrations, except for primary mineral P concentration, which is primarily controlled by soil pH and only secondarily by total soil P concentration. We predicted soil P pools’ distributions in natural systems, which can inform assessments of the role of natural P availability for ecosystem productivity, climate change mitigation, and the functioning of the Earth system.
Yongzhe Chen, Xiaoming Feng, Bojie Fu, Haozhi Ma, Constantin M. Zohner, Thomas W. Crowther, Yuanyuan Huang, Xutong Wu, and Fangli Wei
Earth Syst. Sci. Data, 15, 897–910, https://doi.org/10.5194/essd-15-897-2023, https://doi.org/10.5194/essd-15-897-2023, 2023
Short summary
Short summary
This study presented a long-term (2002–2021) above- and belowground biomass dataset for woody vegetation in China at 1 km resolution. It was produced by combining various types of remote sensing observations with adequate plot measurements. Over 2002–2021, China’s woody biomass increased at a high rate, especially in the central and southern parts. This dataset can be applied to evaluate forest carbon sinks across China and the efficiency of ecological restoration programs in China.
Daniel Rath, Nathaniel Bogie, Leonardo Deiss, Sanjai J. Parikh, Daoyuan Wang, Samantha Ying, Nicole Tautges, Asmeret Asefaw Berhe, Teamrat A. Ghezzehei, and Kate M. Scow
SOIL, 8, 59–83, https://doi.org/10.5194/soil-8-59-2022, https://doi.org/10.5194/soil-8-59-2022, 2022
Short summary
Short summary
Storing C in subsoils can help mitigate climate change, but this requires a better understanding of subsoil C dynamics. We investigated changes in subsoil C storage under a combination of compost, cover crops (WCC), and mineral fertilizer and found that systems with compost + WCC had ~19 Mg/ha more C after 25 years. This increase was attributed to increased transport of soluble C and nutrients via WCC root pores and demonstrates the potential for subsoil C storage in tilled agricultural systems.
Xianjin He, Laurent Augusto, Daniel S. Goll, Bruno Ringeval, Yingping Wang, Julian Helfenstein, Yuanyuan Huang, Kailiang Yu, Zhiqiang Wang, Yongchuan Yang, and Enqing Hou
Earth Syst. Sci. Data, 13, 5831–5846, https://doi.org/10.5194/essd-13-5831-2021, https://doi.org/10.5194/essd-13-5831-2021, 2021
Short summary
Short summary
Our database of globally distributed natural soil total P (STP) concentration showed concentration ranged from 1.4 to 9630.0 (mean 570.0) mg kg−1. Global predictions of STP concentration increased with latitude. Global STP stocks (excluding Antarctica) were estimated to be 26.8 and 62.2 Pg in the topsoil and subsoil, respectively. Our global map of STP concentration can be used to constrain Earth system models representing the P cycle and to inform quantification of global soil P availability.
Jennifer M. Rhymes, Irene Cordero, Mathilde Chomel, Jocelyn M. Lavallee, Angela L. Straathof, Deborah Ashworth, Holly Langridge, Marina Semchenko, Franciska T. de Vries, David Johnson, and Richard D. Bardgett
SOIL, 7, 95–106, https://doi.org/10.5194/soil-7-95-2021, https://doi.org/10.5194/soil-7-95-2021, 2021
Kristen Manies, Mark Waldrop, and Jennifer Harden
Earth Syst. Sci. Data, 12, 1745–1757, https://doi.org/10.5194/essd-12-1745-2020, https://doi.org/10.5194/essd-12-1745-2020, 2020
Short summary
Short summary
Boreal ecosystems are unique in that their mineral soil is covered by what can be quite thick layers of organic soil. Layers within this organic soil have different bulk densities, carbon composition, and nitrogen composition. We summarize these properties by soil layer and examine if and how they are affected by soil drainage and stand age. These values can be used to initialize and validate models as well as gap fill when these important soil properties are not measured.
Henk van Hardeveld, Harm de Jong, Maxim Knepflé, Thijs de Lange, Paul Schot, Bas Spanjers, and Sven Teurlincx
Proc. IAHS, 382, 553–557, https://doi.org/10.5194/piahs-382-553-2020, https://doi.org/10.5194/piahs-382-553-2020, 2020
Short summary
Short summary
To achieve a more sustainable management of the subsiding Dutch peatlands, we used the RE:PEAT tool to elucidate the short-term and long-term impacts during 2025–2100 of adaptive management strategies. We also considered how to fairly distribute the costs and benefits of these strategies among the stakeholder groups. In addition, we explored options for a collective implementation of the strategies, and discussed ideas to capitalize on the potential of RE:PEAT to support peatland management.
Yuqing Liu, Wenhong Ma, Dan Kou, Xiaxia Niu, Tian Wang, Yongliang Chen, Dima Chen, Xiaoqin Zhu, Mengying Zhao, Baihui Hao, Jinbo Zhang, Yuanhe Yang, and Huifeng Hu
Biogeosciences, 17, 2009–2019, https://doi.org/10.5194/bg-17-2009-2020, https://doi.org/10.5194/bg-17-2009-2020, 2020
Short summary
Short summary
The microbial C : N ratio increased with aridity, while the microbial N : P ratio decreased with aridity, which implied that drought-stimulated microbes tend to be more N conservative. Among all examined ecological factors, substrate supply and microbial structure together controlled the microbial stoichiometry. Overall, these results illustrated N and P limitation in microbial biomass at deeper soil depths along the aridity gradient and limited responses to ecological factors in the subsoil.
Xia Zhao, Yuanhe Yang, Haihua Shen, Xiaoqing Geng, and Jingyun Fang
Biogeosciences, 16, 2857–2871, https://doi.org/10.5194/bg-16-2857-2019, https://doi.org/10.5194/bg-16-2857-2019, 2019
Short summary
Short summary
Surface soils interact strongly with both climate and biota and provide fundamental ecosystem services. However, the quantitative linkages between soil, climate, and biota remain unclear at a global scale. By compiling a large global soil database, we mapped eight major soil properties based on machine learning algorithms and developed a global soil–climate–biome diagram. Our results suggest shifts in soil properties under global climate and land cover change.
Yinghui Wang, Robert G. M. Spencer, David C. Podgorski, Anne M. Kellerman, Harunur Rashid, Phoebe Zito, Wenjie Xiao, Dandan Wei, Yuanhe Yang, and Yunping Xu
Biogeosciences, 15, 6637–6648, https://doi.org/10.5194/bg-15-6637-2018, https://doi.org/10.5194/bg-15-6637-2018, 2018
Short summary
Short summary
With global warming, thawing of permafrost releases dissolved organic matter (DOM) into streams. By analyzing DOM along an alpine stream on the Qinghai–Tibet Plateau, we found DOM was mainly from the active layer, but with deepening of the active layer, the contribution of the deep permafrost layer increased, causing a change in the chemical composition of DOM. From the head- to downstream, DOM is undergoing rapid degradation, but some components are persistent and can be transported downstream.
Mark A. Lee, Aaron P. Davis, Mizeck G. G. Chagunda, and Pete Manning
Biogeosciences, 14, 1403–1417, https://doi.org/10.5194/bg-14-1403-2017, https://doi.org/10.5194/bg-14-1403-2017, 2017
Short summary
Short summary
We gathered data from published sources to assess the effects of growing conditions on the nutritive quality of grasses which feed livestock. Nutritive quality is important for livestock productivity and methane production. We found that forage nutritive quality was reduced at higher temperatures. We estimate that cattle methane production may increase in future due to temperature-driven reductions in forage quality. This is a positive climate feedback that further increases global temperatures.
Shangshi Liu, Yuanhe Yang, Haihua Shen, Huifeng Hu, Xia Zhao, He Li, Taoyu Liu, and Jingyun Fang
Biogeosciences Discuss., https://doi.org/10.5194/bg-2016-473, https://doi.org/10.5194/bg-2016-473, 2017
Preprint retracted
Georgina Key, Mike G. Whitfield, Julia Cooper, Franciska T. De Vries, Martin Collison, Thanasis Dedousis, Richard Heathcote, Brendan Roth, Shamal Mohammed, Andrew Molyneux, Wim H. Van der Putten, Lynn V. Dicks, William J. Sutherland, and Richard D. Bardgett
SOIL, 2, 511–521, https://doi.org/10.5194/soil-2-511-2016, https://doi.org/10.5194/soil-2-511-2016, 2016
Short summary
Short summary
Enhancing soil health is key to providing ecosystem services and food security. There are often trade-offs to using a particular practice, or it is not fully understood. This work aimed to identify practices beneficial to soil health and gaps in our knowledge. We reviewed existing research on agricultural practices and an expert panel assessed their effectiveness. The three most beneficial practices used a mix of organic or inorganic material, cover crops, or crop rotations.
Saskia D. Keesstra, Johan Bouma, Jakob Wallinga, Pablo Tittonell, Pete Smith, Artemi Cerdà, Luca Montanarella, John N. Quinton, Yakov Pachepsky, Wim H. van der Putten, Richard D. Bardgett, Simon Moolenaar, Gerben Mol, Boris Jansen, and Louise O. Fresco
SOIL, 2, 111–128, https://doi.org/10.5194/soil-2-111-2016, https://doi.org/10.5194/soil-2-111-2016, 2016
Short summary
Short summary
Soil science, as a land-related discipline, has links to several of the UN Sustainable Development Goals which are demonstrated through the functions of soils and related ecosystem services. We discuss how soil scientists can rise to the challenge both internally and externally in terms of our relations with colleagues in other disciplines, diverse groups of stakeholders and the policy arena. To meet these goals we recommend the set of steps to be taken by the soil science community as a whole.
A. T. Nottingham, B. L. Turner, J. Whitaker, N. J. Ostle, N. P. McNamara, R. D. Bardgett, N. Salinas, and P. Meir
Biogeosciences, 12, 6071–6083, https://doi.org/10.5194/bg-12-6071-2015, https://doi.org/10.5194/bg-12-6071-2015, 2015
Short summary
Short summary
We measured indices of soil microbial nutrient status in lowland, sub-montane and montane tropical forests along a natural gradient spanning 3400 m in elevation in the Peruvian Andes. We show that soil microorganisms shift investment in nutrient acquisition from P to N between lowland and montane tropical forests, suggesting that different nutrients regulate soil microbial metabolism and the soil carbon balance in these ecosystems.
R. Zornoza, J. A. Acosta, F. Bastida, S. G. Domínguez, D. M. Toledo, and A. Faz
SOIL, 1, 173–185, https://doi.org/10.5194/soil-1-173-2015, https://doi.org/10.5194/soil-1-173-2015, 2015
L. Ma, C. Guo, X. Xin, S. Yuan, and R. Wang
Biogeosciences, 10, 7361–7372, https://doi.org/10.5194/bg-10-7361-2013, https://doi.org/10.5194/bg-10-7361-2013, 2013
Related subject area
Domain: ESSD – Land | Subject: Biogeosciences and biodiversity
LegacyVegetation: Northern Hemisphere reconstruction of past plant cover and total tree cover from pollen archives of the last 14 kyr
A new habitat map of the Lena Delta in Arctic Siberia based on field and remote sensing datasets
Mapping global leaf inclination angle (LIA) based on field measurement data
A post-processed carbon flux dataset for 34 eddy covariance flux sites across the Heihe River basin, China
Century-long reconstruction of gridded phosphorus surplus across Europe (1850–2019)
High-resolution carbon cycling data from 2019 to 2021 measured at six Austrian long-term ecosystem research sites
Remote sensing of young leaf photosynthetic capacity in tropical and subtropical evergreen broadleaved forests
The JapanFlux2024 dataset for eddy covariance observations covering Japan and East Asia from 1990 to 2023
An organic matter database (OMD): consolidating global residue data from agriculture, fisheries, forestry and related industries
China's annual forest age dataset at 30 m spatial resolution from 1986 to 2022
An expert survey on chamber measurement techniques for methane fluxes
Gas exchange velocities (k600), gas exchange rates (K600), and hydraulic geometries for streams and rivers derived from the NEON Reaeration field and lab collection data product (DP1.20190.001)
Permafrost-wildfire interactions: Active layer thickness estimates for paired burned and unburned sites in northern high-latitudes
Multi-temporal high-resolution data products of ecosystem structure derived from country-wide airborne laser scanning surveys of the Netherlands
The European Forest Disturbance Atlas: a forest disturbance monitoring system using the Landsat archive
ARGO: ARctic greenhouse Gas Observation metadata version 1
A spectral–structural characterization of European temperate, hemiboreal, and boreal forests
VODCA v2: multi-sensor, multi-frequency vegetation optical depth data for long-term canopy dynamics and biomass monitoring
Crop-specific management history of phosphorus fertilizer input (CMH-P) in the croplands of the United States: reconciliation of top-down and bottom-up data sources
Enhancing long-term vegetation monitoring in Australia: a new approach for harmonising the Advanced Very High Resolution Radiometer normalised-difference vegetation index (NDVI) with MODIS NDVI
The SahulCHAR Collection: A Palaeofire Database for Australia, New Guinea, and New Zealand
Global patterns and drivers of soil dissolved organic carbon concentrations
A synthesized field survey database of vegetation and active-layer properties for the Alaskan tundra (1972–2020)
A vegetation phenology dataset by integrating multiple sources using the Reliability Ensemble Averaging method
TCSIF: a temporally consistent global Global Ozone Monitoring Experiment-2A (GOME-2A) solar-induced chlorophyll fluorescence dataset with the correction of sensor degradation
National forest carbon harvesting and allocation dataset for the period 2003 to 2018
Spatial mapping of key plant functional traits in terrestrial ecosystems across China
WetCH4: A Machine Learning-based Upscaling of Methane Fluxes of Northern Wetlands during 2016–2022
HiQ-LAI: a high-quality reprocessed MODIS leaf area index dataset with better spatiotemporal consistency from 2000 to 2022
EUPollMap: the European atlas of contemporary pollen distribution maps derived from an integrated Kriging interpolation approach
Reference maps of soil phosphorus for the pan-Amazon region
Mapping 24 woody plant species phenology and ground forest phenology over China from 1951 to 2020
Sensor-independent LAI/FPAR CDR: reconstructing a global sensor-independent climate data record of MODIS and VIIRS LAI/FPAR from 2000 to 2022
Investigating limnological processes and modern sedimentation at Lake Żabińskie, northeast Poland: a decade-long multi-variable dataset, 2012–2021
Spatiotemporally consistent global dataset of the GIMMS leaf area index (GIMMS LAI4g) from 1982 to 2020
CEDAR-GPP: spatiotemporally upscaled estimates of gross primary productivity incorporating CO2 fertilization
Spatiotemporally consistent global dataset of the GIMMS Normalized Difference Vegetation Index (PKU GIMMS NDVI) from 1982 to 2022
CLIM4OMICS: a geospatially comprehensive climate and multi-OMICS database for maize phenotype predictability in the United States and Canada
Quantifying exchangeable base cations in permafrost: a reserve of nutrients about to thaw
Routine monitoring of western Lake Erie to track water quality changes associated with cyanobacterial harmful algal blooms
The Portuguese Large Wildfire Spread database (PT-FireSprd)
Thirty-meter map of young forest age in China
GRiMeDB: the Global River Methane Database of concentrations and fluxes
A gridded dataset of a leaf-age-dependent leaf area index seasonality product over tropical and subtropical evergreen broadleaved forests
Fire weather index data under historical and shared socioeconomic pathway projections in the 6th phase of the Coupled Model Intercomparison Project from 1850 to 2100
A remote-sensing-based dataset to characterize the ecosystem functioning and functional diversity in the Biosphere Reserve of the Sierra Nevada (southeastern Spain)
A global long-term, high-resolution satellite radar backscatter data record (1992–2022+): merging C-band ERS/ASCAT and Ku-band QSCAT
A global database on holdover time of lightning-ignited wildfires
National CO2 budgets (2015–2020) inferred from atmospheric CO2 observations in support of the global stocktake
Mammals in the Chornobyl Exclusion Zone's Red Forest: a motion-activated camera trap study
Laura Schild, Peter Ewald, Chenzhi Li, Raphaël Hébert, Thomas Laepple, and Ulrike Herzschuh
Earth Syst. Sci. Data, 17, 2007–2033, https://doi.org/10.5194/essd-17-2007-2025, https://doi.org/10.5194/essd-17-2007-2025, 2025
Short summary
Short summary
This study reconstructed vegetation and tree cover in the Northern Hemisphere from a harmonized dataset of pollen counts from sediment and peat cores for the past 14 000 years. A model was applied to correct for differences in pollen production between different plants, and modern remote-sensing forest cover was used to validate the reconstructed tree cover. Accurate data on past vegetation are invaluable for the investigation of vegetation–climate dynamics and the validation of vegetation models.
Simeon Lisovski, Alexandra Runge, Iuliia Shevtsova, Nele Landgraf, Anne Morgenstern, Ronald Reagan Okoth, Matthias Fuchs, Nikolay Lashchinskiy, Carl Stadie, Alison Beamish, Ulrike Herzschuh, Guido Grosse, and Birgit Heim
Earth Syst. Sci. Data, 17, 1707–1730, https://doi.org/10.5194/essd-17-1707-2025, https://doi.org/10.5194/essd-17-1707-2025, 2025
Short summary
Short summary
The Lena Delta is the largest river delta in the Arctic and represents a biodiversity hotspot. Here, we describe multiple field datasets and a detailed habitat classification map for the Lena Delta. We present context and methods of these openly available datasets and show how they can improve our understanding of the rapidly changing Arctic tundra system.
Sijia Li and Hongliang Fang
Earth Syst. Sci. Data, 17, 1347–1366, https://doi.org/10.5194/essd-17-1347-2025, https://doi.org/10.5194/essd-17-1347-2025, 2025
Short summary
Short summary
Leaf inclination angle (LIA) is a vital trait in radiative transfer, rainfall interception, evapotranspiration, photosynthesis, and hydrological processes. However, global LIA knowledge is still lacking. This study generated the first global 500 m LIA products by gap-filling LIA measurement data. The global LIA is 41.47° ± 9.55° and increases with latitude. LIA products could enhance our understanding of global LIA and assist remote sensing retrieval and land surface modeling studies.
Xufeng Wang, Tao Che, Jingfeng Xiao, Tonghong Wang, Junlei Tan, Yang Zhang, Zhiguo Ren, Liying Geng, Haibo Wang, Ziwei Xu, Shaomin Liu, and Xin Li
Earth Syst. Sci. Data, 17, 1329–1346, https://doi.org/10.5194/essd-17-1329-2025, https://doi.org/10.5194/essd-17-1329-2025, 2025
Short summary
Short summary
In this study, carbon flux and auxiliary meteorological data are post-processed to create an analysis-ready dataset for 34 sites across six ecosystems in the Heihe River basin. Overall, 18 sites have multi-year observations, while 16 were observed only during the 2012 growing season, totaling 1513 site months. This dataset can be used to explore carbon exchange, assess ecosystem responses to climate change, support upscaling studies, and evaluate carbon cycle models.
Masooma Batool, Fanny J. Sarrazin, and Rohini Kumar
Earth Syst. Sci. Data, 17, 881–916, https://doi.org/10.5194/essd-17-881-2025, https://doi.org/10.5194/essd-17-881-2025, 2025
Short summary
Short summary
Our paper presents a reconstruction and analysis of the gridded P surplus in European landscapes from 1850 to 2019 at a 5 arcmin resolution. By utilizing 48 different estimates, we account for uncertainties in major components of the P surplus. Our findings highlight substantial historical changes, with the total P surplus in the EU 27 tripling over 170 years. Our dataset enables flexible aggregation at various spatial scales, providing critical insights for land and water management strategies.
Thomas Dirnböck, Michael Bahn, Eugenio Diaz-Pines, Ika Djukic, Michael Englisch, Karl Gartner, Günther Gollobich, Johannes Ingrisch, Barbara Kitzler, Karl Knaebel, Johannes Kobler, Andreas Maier, Armin Malli, Ivo Offenthaler, Johannes Peterseil, Gisela Pröll, Sarah Venier, Christoph Wohner, Sophie Zechmeister-Boltenstern, Anita Zolles, and Stephan Glatzel
Earth Syst. Sci. Data, 17, 685–702, https://doi.org/10.5194/essd-17-685-2025, https://doi.org/10.5194/essd-17-685-2025, 2025
Short summary
Short summary
Long-term observation sites have been established in six Austrian locations, covering major ecosystem types such as forests, grasslands, and wetlands. The purpose of these observations is to measure baselines for assessing the impacts of extreme climate events on the carbon cycle. The collected datasets include meteorological variables, soil temperature and moisture, carbon dioxide fluxes, and tree stem growth in forests at a resolution of 15–60 min between 2019 and 2021.
Xueqin Yang, Qingling Sun, Liusheng Han, Wenping Yuan, Jie Tian, Liyang Liu, Wei Zheng, Mei Wang, Yunpeng Wang, and Xiuzhi Chen
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2025-64, https://doi.org/10.5194/essd-2025-64, 2025
Revised manuscript accepted for ESSD
Short summary
Short summary
Understanding how leaves absorb carbon from the atmosphere is essential for predicting changes in global forests. Young leaves play a key role in this process, but their efficiency has been difficult to measure at large scales. Using satellite data, we developed a new method to track the seasonal patterns of young leaves’ photosynthetic capacity from 2001 to 2018. Our dataset helps scientists better understand forest growth and how ecosystems respond to climate change.
Masahito Ueyama, Yuta Takao, Hiromi Yazawa, Makiko Tanaka, Hironori Yabuki, Tomo’omi Kumagai, Hiroki Iwata, Md. Abdul Awal, Mingyuan Du, Yoshinobu Harazono, Yoshiaki Hata, Takashi Hirano, Tsutom Hiura, Reiko Ide, Sachinobu Ishida, Mamoru Ishikawa, Kenzo Kitamura, Yuji Kominami, Shujiro Komiya, Ayumi Kotani, Yuta Inoue, Takashi Machimura, Kazuho Matsumoto, Yojiro Matsuura, Yasuko Mizoguchi, Shohei Murayama, Hirohiko Nagano, Taro Nakai, Tatsuro Nakaji, Ko Nakaya, Shinjiro Ohkubo, Takeshi Ohta, Keisuke Ono, Taku M. Saitoh, Ayaka Sakabe, Takanori Shimizu, Seiji Shimoda, Michiaki Sugita, Kentaro Takagi, Yoshiyuki Takahashi, Naoya Takamura, Satoru Takanashi, Takahiro Takimoto, Yukio Yasuda, Qinxue Wang, Jun Asanuma, Hideo Hasegawa, Tetsuya Hiyama, Yoshihiro Iijima, Shigeyuki Ishidoya, Masayuki Itoh, Tomomichi Kato, Hiroaki Kondo, Yoshiko Kosugi, Tomonori Kume, Takahisa Maeda, Trofim Maximov, Ryo Moriwaki, Hiroyuki Muraoka, Roman Petrov, Jun Suzuki, Shingo Taniguchi, and Kazuhito Ichii
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-615, https://doi.org/10.5194/essd-2024-615, 2025
Revised manuscript accepted for ESSD
Short summary
Short summary
The JapanFlux2024 dataset, created through collaboration across Japan and East Asia, includes eddy covariance data from 79 sites spanning 652 site-years (1990–2023). This comprehensive dataset offers valuable insights into energy, water, and CO2 fluxes, supporting research on land-atmosphere interactions and process models. Compatible with FLUXNET, it fosters global collaboration and advances research in environmental science and regional climate dynamics.
Gudeta Weldesemayat Sileshi, Edmundo Barrios, Johannes Lehmann, and Francesco Nicola Tubiello
Earth Syst. Sci. Data, 17, 369–391, https://doi.org/10.5194/essd-17-369-2025, https://doi.org/10.5194/essd-17-369-2025, 2025
Short summary
Short summary
Agricultural, fishery, forestry and agro-processing activities produce large quantities of residues, by-products and waste materials every year. Here, we present a global organic matter database (OMD), the first of its kind, consolidating estimates of residues and by-products potentially available for use in a circular bio-economy. It also provides definitions, typologies and methods to aid consistent classification, estimation and reporting of the various residues and by-products.
Rong Shang, Xudong Lin, Jing M. Chen, Yunjian Liang, Keyan Fang, Mingzhu Xu, Yulin Yan, Weimin Ju, Guirui Yu, Nianpeng He, Li Xu, Liangyun Liu, Jing Li, Wang Li, Jun Zhai, and Zhongmin Hu
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-574, https://doi.org/10.5194/essd-2024-574, 2025
Revised manuscript accepted for ESSD
Short summary
Short summary
Forest age is critical for carbon cycle modelling and effective forest management. Existing datasets, however, have low spatial resolutions or limited temporal coverage. This study introduces China's Annual Forest Age Dataset (CAFA), spanning 1986–2022 at 30-m resolution. By tracking forest disturbances, we annually update ages. Validation shows small errors for disturbed forests and larger for undisturbed forests. CAFA can enhance carbon cycle modelling and forest management in China.
Katharina Jentzsch, Lona van Delden, Matthias Fuchs, and Claire C. Treat
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-381, https://doi.org/10.5194/essd-2024-381, 2024
Revised manuscript accepted for ESSD
Short summary
Short summary
Methane is a greenhouse gas that contributes to global warming, but we do not fully understand how much is released from natural sources like wetlands. To measure methane over large areas, many measurements are needed, often from small chambers that are placed on the ground. However, different researchers use different measurement setups, making it hard to combine data. We surveyed 36 researchers about their methods, summarized the responses, and identified ways to make the data more comparable.
Kelly S. Aho, Kaelin M. Cawley, Robert T. Hensley, Robert O. Hall Jr., Walter K. Dodds, and Keli J. Goodman
Earth Syst. Sci. Data, 16, 5563–5578, https://doi.org/10.5194/essd-16-5563-2024, https://doi.org/10.5194/essd-16-5563-2024, 2024
Short summary
Short summary
Gas exchange is fundamental to many biogeochemical processes in streams and depends on the degree of gas saturation and the gas transfer velocity (k). Currently, k is harder to measure than concentration. Here, we present a processing pipeline to estimate k from tracer-gas experiments conducted in 22 streams by the National Ecological Observatory Network. The processed dataset (n = 339) represents the largest compilation of standardized k estimates available.
Anna Talucci, Michael M. Loranty, Jean E. Holloway, Brendan M. Rogers, Heather D. Alexander, Natalie Baillargeon, Jennifer L. Baltzer, Logan T. Berner, Amy Breen, Leya Brodt, Brian Buma, Jacqueline Dean, Clement J. F. Delcourt, Lucas R. Diaz, Catherine M. Dieleman, Thomas A. Douglas, Gerald V. Frost, Benjamin V. Gaglioti, Rebecca E. Hewitt, Teresa Hollingsworth, M. Torre Jorgenson, Mark J. Lara, Rachel A. Loehman, Michelle C. Mack, Kristen L. Manies, Christina Minions, Susan M. Natali, Jonathan A. O'Donnell, David Olefeldt, Alison K. Paulson, Adrian V. Rocha, Lisa B. Saperstein, Tatiana A. Shestakova, Seeta Sistla, Oleg Sizov, Andrey Soromotin, Merritt R. Turetsky, Sander Veraverbeke, and Michelle A. Walvoord
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-526, https://doi.org/10.5194/essd-2024-526, 2024
Revised manuscript accepted for ESSD
Short summary
Short summary
Wildfires have the potential to accelerate permafrost thaw and the associated feedbacks to climate change. We assembled a data set of permafrost thaw depth measurements from burned and unburned sites contributed by researchers from across the northern high latitude region. We estimated maximum thaw depth for each measurement, which addresses a key challenge: the ability to assess impacts of wildfire on maximum thaw depth when measurement timing varies.
Yifang Shi and W. Daniel Kissling
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-488, https://doi.org/10.5194/essd-2024-488, 2024
Revised manuscript accepted for ESSD
Short summary
Short summary
We present a new set of multi-temporal LiDAR metrics of ecosystem structure derived from four national ALS surveys of the Netherlands (AHN1–AHN4), capturing vegetation height, cover, and structural variability over the past two decades (1998–2022). Around 70 TB point clouds have been processed to read-to-use raster layers at 10 m resolution (~ 59 GB), enabling a wide use and uptake of ecosystem structure information in biodiversity and habitat monitoring, ecosystem and carbon dynamic modelling.
Alba Viana-Soto and Cornelius Senf
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-361, https://doi.org/10.5194/essd-2024-361, 2024
Revised manuscript accepted for ESSD
Short summary
Short summary
Europe's forests are undergoing complex changes in response to increasing disturbances driven by climate and land use changes. We present here the European Forest Disturbance Atlas, a satellite-based approach for mapping annual forest disturbances across continental Europe since 1985. Maps provide insights into the year of disturbance occurrence, the actual frequency of disturbances, severity and the underlying causal agent, thus contributing to a future monitoring system envisioned for Europe.
Judith Vogt, Martijn M. T. A. Pallandt, Luana S. Basso, Abdullah Bolek, Kseniia Ivanova, Mark Schlutow, Gerardo Celis, McKenzie Kuhn, Marguerite Mauritz, Edward A. G. Schuur, Kyle Arndt, Anna-Maria Virkkala, Isabel Wargowsky, and Mathias Göckede
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-456, https://doi.org/10.5194/essd-2024-456, 2024
Revised manuscript accepted for ESSD
Short summary
Short summary
We present ARGO, a meta-dataset of greenhouse gas observations in Arctic and boreal regions including information about sites where greenhouse gases were measured across different measurement techniques. This dataset provides a novel repository for metadata to facilitate synthesis efforts for regions experiencing rapid environmental change. The meta-dataset shows where measurements lack and will be updated as new measurements are made public.
Miina Rautiainen, Aarne Hovi, Daniel Schraik, Jan Hanuš, Petr Lukeš, Zuzana Lhotáková, and Lucie Homolová
Earth Syst. Sci. Data, 16, 5069–5087, https://doi.org/10.5194/essd-16-5069-2024, https://doi.org/10.5194/essd-16-5069-2024, 2024
Short summary
Short summary
Radiative transfer models play a key role in monitoring vegetation using remote sensing data such as satellite or airborne images. The development of these models has been hindered by a lack of comprehensive ground reference data on structural and spectral characteristics of forests. Here, we reported datasets on the structural and spectral properties of temperate, hemiboreal, and boreal European forest stands. We anticipate that these data will have wide use in remote sensing applications.
Ruxandra-Maria Zotta, Leander Moesinger, Robin van der Schalie, Mariette Vreugdenhil, Wolfgang Preimesberger, Thomas Frederikse, Richard de Jeu, and Wouter Dorigo
Earth Syst. Sci. Data, 16, 4573–4617, https://doi.org/10.5194/essd-16-4573-2024, https://doi.org/10.5194/essd-16-4573-2024, 2024
Short summary
Short summary
VODCA v2 is a dataset providing vegetation indicators for long-term ecosystem monitoring. VODCA v2 comprises two products: VODCA CXKu, spanning 34 years of observations (1987–2021), suitable for monitoring upper canopy dynamics, and VODCA L (2010–2021), for above-ground biomass monitoring. VODCA v2 has lower noise levels than the previous product version and provides valuable insights into plant water dynamics and biomass changes, even in areas where optical data are limited.
Peiyu Cao, Bo Yi, Franco Bilotto, Carlos Gonzalez Fischer, Mario Herrero, and Chaoqun Lu
Earth Syst. Sci. Data, 16, 4557–4572, https://doi.org/10.5194/essd-16-4557-2024, https://doi.org/10.5194/essd-16-4557-2024, 2024
Short summary
Short summary
This article presents a spatially explicit time series dataset reconstructing crop-specific phosphorus fertilizer application rates, timing, and methods at a 4 km × 4 km resolution in the United States from 1850 to 2022. We comprehensively characterized the spatio-temporal dynamics of P fertilizer management over the last 170 years by considering cross-crop variations. This dataset will greatly contribute to the field of agricultural sustainability assessment and Earth system modeling.
Chad A. Burton, Sami W. Rifai, Luigi J. Renzullo, and Albert I. J. M. Van Dijk
Earth Syst. Sci. Data, 16, 4389–4416, https://doi.org/10.5194/essd-16-4389-2024, https://doi.org/10.5194/essd-16-4389-2024, 2024
Short summary
Short summary
Understanding vegetation response to environmental change requires accurate, long-term data on vegetation condition (VC). We evaluated existing satellite VC datasets over Australia and found them lacking, so we developed a new VC dataset for Australia, AusENDVI. It can be used for studying Australia's changing vegetation dynamics and downstream impacts on the carbon and water cycles, and it provides a reliable foundation for further research into the drivers of vegetation change.
Emma Rehn, Haidee Cadd, Scott Mooney, Tim J. Cohen, Henry Munack, Alexandru T. Codilean, Matthew Adeleye, Kristen K. Beck, Mark Constantine IV, Chris Gouramanis, Johanna M. Hanson, Penelope J. Jones, A. Peter Kershaw, Lydia Mackenzie, Maame Maisie, Michela Mariani, Kia Mately, David McWethy, Keely Mills, Patrick Moss, Nicholas R. Patton, Cassandra Rowe, Janelle Stevenson, John Tibby, and Janet Wilmshurst
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-328, https://doi.org/10.5194/essd-2024-328, 2024
Revised manuscript accepted for ESSD
Short summary
Short summary
This paper presents SahulCHAR, a new collection of palaeofire (ancient fire) records from Australia, New Guinea, and New Zealand. SahulCHAR Version 1 contains 687 records of sedimentary charcoal or black carbon, including digitized data, records from existing databases, and original author-submitted data. SahulCHAR is a much-needed update on past charcoal compilations that will also provide greater representation of records from this region in future global syntheses to understand past fire.
Tianjing Ren and Andong Cai
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-343, https://doi.org/10.5194/essd-2024-343, 2024
Revised manuscript accepted for ESSD
Short summary
Short summary
This study compiles a global database of soil dissolved organic carbon (DOC) concentrations, a key factor in soil health and climate change. Using machine learning, it identifies the most influential factors affecting soil DOC levels and maps global patterns. The findings help guide soil management and climate strategies, with the dataset available for further research.
Xiaoran Zhu, Dong Chen, Maruko Kogure, Elizabeth Hoy, Logan T. Berner, Amy L. Breen, Abhishek Chatterjee, Scott J. Davidson, Gerald V. Frost, Teresa N. Hollingsworth, Go Iwahana, Randi R. Jandt, Anja N. Kade, Tatiana V. Loboda, Matt J. Macander, Michelle Mack, Charles E. Miller, Eric A. Miller, Susan M. Natali, Martha K. Raynolds, Adrian V. Rocha, Shiro Tsuyuzaki, Craig E. Tweedie, Donald A. Walker, Mathew Williams, Xin Xu, Yingtong Zhang, Nancy French, and Scott Goetz
Earth Syst. Sci. Data, 16, 3687–3703, https://doi.org/10.5194/essd-16-3687-2024, https://doi.org/10.5194/essd-16-3687-2024, 2024
Short summary
Short summary
The Arctic tundra is experiencing widespread physical and biological changes, largely in response to warming, yet scientific understanding of tundra ecology and change remains limited due to relatively limited accessibility and studies compared to other terrestrial biomes. To support synthesis research and inform future studies, we created the Synthesized Alaskan Tundra Field Dataset (SATFiD), which brings together field datasets and includes vegetation, active-layer, and fire properties.
Yishuo Cui, Shouzhi Chen, Yufeng Gong, Mingwei Li, Zitong Jia, Yuyu Zhou, and Yongshuo H. Fu
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-225, https://doi.org/10.5194/essd-2024-225, 2024
Revised manuscript accepted for ESSD
Short summary
Short summary
Global changes have significantly altered vegetation phenology, affecting terrestrial carbon cycle. While various remote-sensing-based phenology datasets exist, they often suffer from inconsistencies and uncertainties. To address this, we developed a new phenology dataset spanning 1982 to 2022 using a reliability ensemble averaging method. Validated against ground data, our dataset demonstrates substantially improved accuracy, providing a novel and reliable source for global ecological studies.
Chu Zou, Shanshan Du, Xinjie Liu, and Liangyun Liu
Earth Syst. Sci. Data, 16, 2789–2809, https://doi.org/10.5194/essd-16-2789-2024, https://doi.org/10.5194/essd-16-2789-2024, 2024
Short summary
Short summary
To obtain a temporally consistent satellite solar-induced chlorophyll fluorescence
(SIF) product (TCSIF), we corrected for time degradation of GOME-2A using a pseudo-invariant method. After the correction, the global SIF grew by 0.70 % per year from 2007 to 2021, and 62.91 % of vegetated regions underwent an increase in SIF. The dataset is a promising tool for monitoring global vegetation variation and will advance our understanding of vegetation's photosynthetic activities at a global scale.
(SIF) product (TCSIF), we corrected for time degradation of GOME-2A using a pseudo-invariant method. After the correction, the global SIF grew by 0.70 % per year from 2007 to 2021, and 62.91 % of vegetated regions underwent an increase in SIF. The dataset is a promising tool for monitoring global vegetation variation and will advance our understanding of vegetation's photosynthetic activities at a global scale.
Daju Wang, Peiyang Ren, Xiaosheng Xia, Lei Fan, Zhangcai Qin, Xiuzhi Chen, and Wenping Yuan
Earth Syst. Sci. Data, 16, 2465–2481, https://doi.org/10.5194/essd-16-2465-2024, https://doi.org/10.5194/essd-16-2465-2024, 2024
Short summary
Short summary
This study generated a high-precision dataset, locating forest harvested carbon and quantifying post-harvest wood emissions for various uses. It enhances our understanding of forest harvesting and post-harvest carbon dynamics in China, providing essential data for estimating the forest ecosystem carbon budget and emphasizing wood utilization's impact on carbon emissions.
Nannan An, Nan Lu, Weiliang Chen, Yongzhe Chen, Hao Shi, Fuzhong Wu, and Bojie Fu
Earth Syst. Sci. Data, 16, 1771–1810, https://doi.org/10.5194/essd-16-1771-2024, https://doi.org/10.5194/essd-16-1771-2024, 2024
Short summary
Short summary
This study generated a spatially continuous plant functional trait dataset (~1 km) in China in combination with field observations, environmental variables and vegetation indices using machine learning methods. Results showed that wood density, leaf P concentration and specific leaf area showed good accuracy with an average R2 of higher than 0.45. This dataset could provide data support for development of Earth system models to predict vegetation distribution and ecosystem functions.
Qing Ying, Benjamin Poulter, Jennifer D. Watts, Kyle A. Arndt, Anna-Maria Virkkala, Lori Bruhwiler, Youmi Oh, Brendan M. Rogers, Susan M. Natali, Hilary Sullivan, Luke D. Schiferl, Clayton Elder, Olli Peltola, Annett Bartsch, Amanda Armstrong, Ankur R. Desai, Eugénie Euskirchen, Mathias Göckede, Bernhard Lehner, Mats B. Nilsson, Matthias Peichl, Oliver Sonnentag, Eeva-Stiina Tuittila, Torsten Sachs, Aram Kalhori, Masahito Ueyama, and Zhen Zhang
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-84, https://doi.org/10.5194/essd-2024-84, 2024
Revised manuscript accepted for ESSD
Short summary
Short summary
We present daily methane fluxes of northern wetlands at 10-km resolution during 2016–2022 (WetCH4) derived from a novel machine-learning framework with improved accuracy. We estimated an average annual CH4 emissions of 20.8 ±2.1 Tg CH4 yr-1. Emissions were intensified in 2016, 2020, and 2022, with the largest interannual variations coming from West Siberia. Continued, all-season tower observations and improved soil moisture products are needed for future improvement of CH4 upscaling.
Kai Yan, Jingrui Wang, Rui Peng, Kai Yang, Xiuzhi Chen, Gaofei Yin, Jinwei Dong, Marie Weiss, Jiabin Pu, and Ranga B. Myneni
Earth Syst. Sci. Data, 16, 1601–1622, https://doi.org/10.5194/essd-16-1601-2024, https://doi.org/10.5194/essd-16-1601-2024, 2024
Short summary
Short summary
Variations in observational conditions have led to poor spatiotemporal consistency in leaf area index (LAI) time series. Using prior knowledge, we leveraged high-quality observations and spatiotemporal correlation to reprocess MODIS LAI, thereby generating HiQ-LAI, a product that exhibits fewer abnormal fluctuations in time series. Reprocessing was done on Google Earth Engine, providing users with convenient access to this value-added data and facilitating large-scale research and applications.
Fabio Oriani, Gregoire Mariethoz, and Manuel Chevalier
Earth Syst. Sci. Data, 16, 731–742, https://doi.org/10.5194/essd-16-731-2024, https://doi.org/10.5194/essd-16-731-2024, 2024
Short summary
Short summary
Modern and fossil pollen data contain precious information for reconstructing the climate and environment of the past. However, these data are only achieved for single locations with no continuity in space. We present here a systematic atlas of 194 digital maps containing the spatial estimation of contemporary pollen presence over Europe. This dataset constitutes a free and ready-to-use tool to study climate, biodiversity, and environment in time and space.
João Paulo Darela-Filho, Anja Rammig, Katrin Fleischer, Tatiana Reichert, Laynara Figueiredo Lugli, Carlos Alberto Quesada, Luis Carlos Colocho Hurtarte, Mateus Dantas de Paula, and David M. Lapola
Earth Syst. Sci. Data, 16, 715–729, https://doi.org/10.5194/essd-16-715-2024, https://doi.org/10.5194/essd-16-715-2024, 2024
Short summary
Short summary
Phosphorus (P) is crucial for plant growth, and scientists have created models to study how it interacts with carbon cycle in ecosystems. To apply these models, it is important to know the distribution of phosphorus in soil. In this study we estimated the distribution of phosphorus in the Amazon region. The results showed a clear gradient of soil development and P content. These maps can help improve ecosystem models and generate new hypotheses about phosphorus availability in the Amazon.
Mengyao Zhu, Junhu Dai, Huanjiong Wang, Juha M. Alatalo, Wei Liu, Yulong Hao, and Quansheng Ge
Earth Syst. Sci. Data, 16, 277–293, https://doi.org/10.5194/essd-16-277-2024, https://doi.org/10.5194/essd-16-277-2024, 2024
Short summary
Short summary
This study utilized 24,552 in situ phenology observation records from the Chinese Phenology Observation Network to model and map 24 woody plant species phenology and ground forest phenology over China from 1951 to 2020. These phenology maps are the first gridded, independent and reliable phenology data sources for China, offering a high spatial resolution of 0.1° and an average deviation of about 10 days. It contributes to more comprehensive research on plant phenology and climate change.
Jiabin Pu, Kai Yan, Samapriya Roy, Zaichun Zhu, Miina Rautiainen, Yuri Knyazikhin, and Ranga B. Myneni
Earth Syst. Sci. Data, 16, 15–34, https://doi.org/10.5194/essd-16-15-2024, https://doi.org/10.5194/essd-16-15-2024, 2024
Short summary
Short summary
Long-term global LAI/FPAR products provide the fundamental dataset for accessing vegetation dynamics and studying climate change. This study develops a sensor-independent LAI/FPAR climate data record based on the integration of Terra-MODIS/Aqua-MODIS/VIIRS LAI/FPAR standard products and applies advanced gap-filling techniques. The SI LAI/FPAR CDR provides a valuable resource for researchers studying vegetation dynamics and their relationship to climate change in the 21st century.
Wojciech Tylmann, Alicja Bonk, Dariusz Borowiak, Paulina Głowacka, Kamil Nowiński, Joanna Piłczyńska, Agnieszka Szczerba, and Maurycy Żarczyński
Earth Syst. Sci. Data, 15, 5093–5103, https://doi.org/10.5194/essd-15-5093-2023, https://doi.org/10.5194/essd-15-5093-2023, 2023
Short summary
Short summary
We present a dataset from the decade-long monitoring of Lake Żabińskie, a hardwater and eutrophic lake in northeast Poland. The lake contains varved sediments, which form a unique archive of past environmental variability. The monitoring program was designed to capture a pattern of relationships between meteorological conditions, limnological processes, and modern sedimentation and to verify if meteorological and limnological phenomena can be precisely tracked with varves.
Sen Cao, Muyi Li, Zaichun Zhu, Zhe Wang, Junjun Zha, Weiqing Zhao, Zeyu Duanmu, Jiana Chen, Yaoyao Zheng, Yue Chen, Ranga B. Myneni, and Shilong Piao
Earth Syst. Sci. Data, 15, 4877–4899, https://doi.org/10.5194/essd-15-4877-2023, https://doi.org/10.5194/essd-15-4877-2023, 2023
Short summary
Short summary
The long-term global leaf area index (LAI) products are critical for characterizing vegetation dynamics under environmental changes. This study presents an updated GIMMS LAI product (GIMMS LAI4g; 1982−2020) based on PKU GIMMS NDVI and massive Landsat LAI samples. With higher accuracy than other LAI products, GIMMS LAI4g removes the effects of orbital drift and sensor degradation in AVHRR data. It has better temporal consistency before and after 2000 and a more reasonable global vegetation trend.
Yanghui Kang, Max Gaber, Maoya Bassiouni, Xinchen Lu, and Trevor Keenan
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2023-337, https://doi.org/10.5194/essd-2023-337, 2023
Revised manuscript accepted for ESSD
Short summary
Short summary
CEDAR-GPP provides spatiotemporally upscaled estimates of Gross Primary Productivity, uniquely incorporating the direct effect of elevated atmospheric CO2 on global photosynthesis. This dataset was produced by upscaling global eddy covariance measurements with multi-source satellite observations and climate data using machine learning. Available at monthly and 0.05° resolution from 1982 to 2020, CEDAR-GPP offers critical insights into ecosystem-climate interaction.
Muyi Li, Sen Cao, Zaichun Zhu, Zhe Wang, Ranga B. Myneni, and Shilong Piao
Earth Syst. Sci. Data, 15, 4181–4203, https://doi.org/10.5194/essd-15-4181-2023, https://doi.org/10.5194/essd-15-4181-2023, 2023
Short summary
Short summary
Long-term global Normalized Difference Vegetation Index (NDVI) products support the understanding of changes in vegetation under environmental changes. This study generates a consistent global NDVI product (PKU GIMMS NDVI) from 1982–2022 that eliminates the issue of orbital drift and sensor degradation in Advanced Very High Resolution Radiometer (AVHRR) data. More accurate than its predecessor (GIMMS NDVI3g), it shows high temporal consistency with MODIS NDVI in describing vegetation trends.
Parisa Sarzaeim, Francisco Muñoz-Arriola, Diego Jarquin, Hasnat Aslam, and Natalia De Leon Gatti
Earth Syst. Sci. Data, 15, 3963–3990, https://doi.org/10.5194/essd-15-3963-2023, https://doi.org/10.5194/essd-15-3963-2023, 2023
Short summary
Short summary
A genomic, phenomic, and climate database for maize phenotype predictability in the US and Canada is introduced. The database encompasses climate from multiple sources and OMICS from the Genomes to Fields initiative (G2F) data from 2014 to 2021, including codes for input data quality and consistency controls. Earth system modelers and breeders can use CLIM4OMICS since it interconnects the climate and biological system sciences. CLIM4OMICS is designed to foster phenotype predictability.
Elisabeth Mauclet, Maëlle Villani, Arthur Monhonval, Catherine Hirst, Edward A. G. Schuur, and Sophie Opfergelt
Earth Syst. Sci. Data, 15, 3891–3904, https://doi.org/10.5194/essd-15-3891-2023, https://doi.org/10.5194/essd-15-3891-2023, 2023
Short summary
Short summary
Permafrost ecosystems are limited in nutrients for vegetation development and constrain the biological activity to the active layer. Upon Arctic warming, permafrost degradation exposes organic and mineral soil material that may directly influence the capacity of the soil to retain key nutrients for vegetation growth and development. Here, we demonstrate that the average total exchangeable nutrient density (Ca, K, Mg, and Na) is more than 2 times higher in the permafrost than in the active layer.
Anna G. Boegehold, Ashley M. Burtner, Andrew C. Camilleri, Glenn Carter, Paul DenUyl, David Fanslow, Deanna Fyffe Semenyuk, Casey M. Godwin, Duane Gossiaux, Thomas H. Johengen, Holly Kelchner, Christine Kitchens, Lacey A. Mason, Kelly McCabe, Danna Palladino, Dack Stuart, Henry Vanderploeg, and Reagan Errera
Earth Syst. Sci. Data, 15, 3853–3868, https://doi.org/10.5194/essd-15-3853-2023, https://doi.org/10.5194/essd-15-3853-2023, 2023
Short summary
Short summary
Western Lake Erie suffers from cyanobacterial harmful algal blooms (HABs) despite decades of international management efforts. In response, the US National Oceanic and Atmospheric Administration (NOAA) Great Lakes Environmental Research Laboratory (GLERL) and the Cooperative Institute for Great Lakes Research (CIGLR) created an annual sampling program to detect, monitor, assess, and predict HABs. Here we describe the data collected from this monitoring program from 2012 to 2021.
Akli Benali, Nuno Guiomar, Hugo Gonçalves, Bernardo Mota, Fábio Silva, Paulo M. Fernandes, Carlos Mota, Alexandre Penha, João Santos, José M. C. Pereira, and Ana C. L. Sá
Earth Syst. Sci. Data, 15, 3791–3818, https://doi.org/10.5194/essd-15-3791-2023, https://doi.org/10.5194/essd-15-3791-2023, 2023
Short summary
Short summary
We reconstructed the spread of 80 large wildfires that burned recently in Portugal and calculated metrics that describe how wildfires behave, such as rate of spread, growth rate, and energy released. We describe the fire behaviour distribution using six percentile intervals that can be easily communicated to both research and management communities. The database will help improve our current knowledge on wildfire behaviour and support better decision making.
Yuelong Xiao, Qunming Wang, Xiaohua Tong, and Peter M. Atkinson
Earth Syst. Sci. Data, 15, 3365–3386, https://doi.org/10.5194/essd-15-3365-2023, https://doi.org/10.5194/essd-15-3365-2023, 2023
Short summary
Short summary
Forest age is closely related to forest production, carbon cycles, and other ecosystem services. Existing stand age products in China derived from remote-sensing images are of a coarse spatial resolution and are not suitable for applications at the regional scale. Here, we mapped young forest ages across China at an unprecedented fine spatial resolution of 30 m. The overall accuracy (OA) of the generated map of young forest stand ages across China was 90.28 %.
Emily H. Stanley, Luke C. Loken, Nora J. Casson, Samantha K. Oliver, Ryan A. Sponseller, Marcus B. Wallin, Liwei Zhang, and Gerard Rocher-Ros
Earth Syst. Sci. Data, 15, 2879–2926, https://doi.org/10.5194/essd-15-2879-2023, https://doi.org/10.5194/essd-15-2879-2023, 2023
Short summary
Short summary
The Global River Methane Database (GRiMeDB) presents CH4 concentrations and fluxes for flowing waters and concurrent measures of CO2, N2O, and several physicochemical variables, plus information about sample locations and methods used to measure gas fluxes. GRiMeDB is intended to increase opportunities to understand variation in fluvial CH4, test hypotheses related to greenhouse gas dynamics, and reduce uncertainty in future estimates of gas emissions from world streams and rivers.
Xueqin Yang, Xiuzhi Chen, Jiashun Ren, Wenping Yuan, Liyang Liu, Juxiu Liu, Dexiang Chen, Yihua Xiao, Qinghai Song, Yanjun Du, Shengbiao Wu, Lei Fan, Xiaoai Dai, Yunpeng Wang, and Yongxian Su
Earth Syst. Sci. Data, 15, 2601–2622, https://doi.org/10.5194/essd-15-2601-2023, https://doi.org/10.5194/essd-15-2601-2023, 2023
Short summary
Short summary
We developed the first time-mapped, continental-scale gridded dataset of monthly leaf area index (LAI) in three leaf age cohorts (i.e., young, mature, and old) from 2001–2018 data (referred to as Lad-LAI). The seasonality of three LAI cohorts from the new Lad-LAI product agrees well at eight sites with very fine-scale collections of monthly LAI. The proposed satellite-based approaches can provide references for mapping finer spatiotemporal-resolution LAI products with different leaf age cohorts.
Yann Quilcaille, Fulden Batibeniz, Andreia F. S. Ribeiro, Ryan S. Padrón, and Sonia I. Seneviratne
Earth Syst. Sci. Data, 15, 2153–2177, https://doi.org/10.5194/essd-15-2153-2023, https://doi.org/10.5194/essd-15-2153-2023, 2023
Short summary
Short summary
We present a new database of four annual fire weather indicators over 1850–2100 and over all land areas. In a 3°C warmer world with respect to preindustrial times, the mean fire weather would increase on average by at least 66% in both intensity and duration and even triple for 1-in-10-year events. The dataset is a freely available resource for fire danger studies and beyond, highlighting that the best course of action would require limiting global warming as much as possible.
Beatriz P. Cazorla, Javier Cabello, Andrés Reyes, Emilio Guirado, Julio Peñas, Antonio J. Pérez-Luque, and Domingo Alcaraz-Segura
Earth Syst. Sci. Data, 15, 1871–1887, https://doi.org/10.5194/essd-15-1871-2023, https://doi.org/10.5194/essd-15-1871-2023, 2023
Short summary
Short summary
This dataset provides scientists, environmental managers, and the public in general with valuable information on the first characterization of ecosystem functional diversity based on primary production developed in the Sierra Nevada (Spain), a biodiversity hotspot in the Mediterranean basin and an exceptional natural laboratory for ecological research within the Long-Term Social-Ecological Research (LTSER) network.
Shengli Tao, Zurui Ao, Jean-Pierre Wigneron, Sassan Saatchi, Philippe Ciais, Jérôme Chave, Thuy Le Toan, Pierre-Louis Frison, Xiaomei Hu, Chi Chen, Lei Fan, Mengjia Wang, Jiangling Zhu, Xia Zhao, Xiaojun Li, Xiangzhuo Liu, Yanjun Su, Tianyu Hu, Qinghua Guo, Zhiheng Wang, Zhiyao Tang, Yi Y. Liu, and Jingyun Fang
Earth Syst. Sci. Data, 15, 1577–1596, https://doi.org/10.5194/essd-15-1577-2023, https://doi.org/10.5194/essd-15-1577-2023, 2023
Short summary
Short summary
We provide the first long-term (since 1992), high-resolution (8.9 km) satellite radar backscatter data set (LHScat) with a C-band (5.3 GHz) signal dynamic for global lands. LHScat was created by fusing signals from ERS (1992–2001; C-band), QSCAT (1999–2009; Ku-band), and ASCAT (since 2007; C-band). LHScat has been validated against independent ERS-2 signals. It could be used in a variety of studies, such as vegetation monitoring and hydrological modelling.
Jose V. Moris, Pedro Álvarez-Álvarez, Marco Conedera, Annalie Dorph, Thomas D. Hessilt, Hugh G. P. Hunt, Renata Libonati, Lucas S. Menezes, Mortimer M. Müller, Francisco J. Pérez-Invernón, Gianni B. Pezzatti, Nicolau Pineda, Rebecca C. Scholten, Sander Veraverbeke, B. Mike Wotton, and Davide Ascoli
Earth Syst. Sci. Data, 15, 1151–1163, https://doi.org/10.5194/essd-15-1151-2023, https://doi.org/10.5194/essd-15-1151-2023, 2023
Short summary
Short summary
This work describes a database on holdover times of lightning-ignited wildfires (LIWs). Holdover time is defined as the time between lightning-induced fire ignition and fire detection. The database contains 42 datasets built with data on more than 152 375 LIWs from 13 countries in five continents from 1921 to 2020. This database is the first freely-available, harmonized and ready-to-use global source of holdover time data, which may be used to investigate LIWs and model the holdover phenomenon.
Brendan Byrne, David F. Baker, Sourish Basu, Michael Bertolacci, Kevin W. Bowman, Dustin Carroll, Abhishek Chatterjee, Frédéric Chevallier, Philippe Ciais, Noel Cressie, David Crisp, Sean Crowell, Feng Deng, Zhu Deng, Nicholas M. Deutscher, Manvendra K. Dubey, Sha Feng, Omaira E. García, David W. T. Griffith, Benedikt Herkommer, Lei Hu, Andrew R. Jacobson, Rajesh Janardanan, Sujong Jeong, Matthew S. Johnson, Dylan B. A. Jones, Rigel Kivi, Junjie Liu, Zhiqiang Liu, Shamil Maksyutov, John B. Miller, Scot M. Miller, Isamu Morino, Justus Notholt, Tomohiro Oda, Christopher W. O'Dell, Young-Suk Oh, Hirofumi Ohyama, Prabir K. Patra, Hélène Peiro, Christof Petri, Sajeev Philip, David F. Pollard, Benjamin Poulter, Marine Remaud, Andrew Schuh, Mahesh K. Sha, Kei Shiomi, Kimberly Strong, Colm Sweeney, Yao Té, Hanqin Tian, Voltaire A. Velazco, Mihalis Vrekoussis, Thorsten Warneke, John R. Worden, Debra Wunch, Yuanzhi Yao, Jeongmin Yun, Andrew Zammit-Mangion, and Ning Zeng
Earth Syst. Sci. Data, 15, 963–1004, https://doi.org/10.5194/essd-15-963-2023, https://doi.org/10.5194/essd-15-963-2023, 2023
Short summary
Short summary
Changes in the carbon stocks of terrestrial ecosystems result in emissions and removals of CO2. These can be driven by anthropogenic activities (e.g., deforestation), natural processes (e.g., fires) or in response to rising CO2 (e.g., CO2 fertilization). This paper describes a dataset of CO2 emissions and removals derived from atmospheric CO2 observations. This pilot dataset informs current capabilities and future developments towards top-down monitoring and verification systems.
Nicholas A. Beresford, Sergii Gashchak, Michael D. Wood, and Catherine L. Barnett
Earth Syst. Sci. Data, 15, 911–920, https://doi.org/10.5194/essd-15-911-2023, https://doi.org/10.5194/essd-15-911-2023, 2023
Short summary
Short summary
Camera traps were established in a highly contaminated area of the Chornobyl Exclusion Zone (CEZ) to capture images of mammals. Over 1 year, 14 mammal species were recorded. The number of species observed did not vary with estimated radiation exposure. The data will be of value from the perspectives of effects of radiation on wildlife and also rewilding in this large, abandoned area. They may also have value in future studies investigating impacts of recent Russian military action in the CEZ.
Cited articles
Anderegg, L. D. L., Anderegg, W. R. L., Abatzoglou, J., Hausladen, A. M., and
Berry, J. A.: Drought characteristics' role in widespread aspen forest
mortality across Colorado, USA, Glob. Chang. Biol., 19, 1526–1537,
https://doi.org/10.1111/gcb.12146, 2013.
Averill, C., Turner, B. L., and Finzi, A. C.: Mycorrhiza-mediated competition
between plants and decomposers drives soil carbon storage, Nature,
505, 543–545, https://doi.org/10.1038/nature12901, 2014.
Bahram, M., Hildebrand, F., Forslund, S. K., Anderson, J. L.,
Soudzilovskaia, N. A., Bodegom, P. M., Bengtsson-Palme, J., Anslan, S.,
Coelho, L. P., Harend, H., Huerta-Cepas, J., Medema, M. H., Maltz, M. R.,
Mundra, S., Olsson, P. A., Pent, M., Põlme, S., Sunagawa, S., Ryberg,
M., Tedersoo, L., and Bork, P.: Structure and function of the global topsoil
microbiome, Nature, 560, 233–237, https://doi.org/10.1038/s41586-018-0386-6,
2018.
Bardgett, R. D. and van der Putten, W. H.: Belowground biodiversity and
ecosystem functioning., Nature, 515, 505–511, https://doi.org/10.1038/nature13855,
2014.
Bardgett, R. D., Freeman, C., and Ostle, N. J.: Microbial contributions to
climate change through carbon cycle feedbacks, ISME J., 2, 805–814,
https://doi.org/10.1038/ismej.2008.58, 2008.
Breiman, L.: Random forests, Mach. Learn., 45, 5–32,
https://doi.org/10.1023/A:1010933404324, 2001.
Caldwell, B. A.: Enzyme activities as a component of soil biodiversity: A review, Pedobiologia, 49, 637–644, https://doi.org/10.1016/j.pedobi.2005.06.003, 2005.
Chen, Y. L., Ding, J. Z., Peng, Y. F., Li, F., Yang, G. B., Liu, L., Qin, S.
Q., Fang, K., and Yang, Y. H.: Patterns and drivers of soil microbial
communities in Tibetan alpine and global terrestrial ecosystems, J.
Biogeogr., 43, 2027–2039, https://doi.org/10.1111/jbi.12806, 2016.
Crowther, T. W., van den Hoogen, J., Wan, J., Mayes, M. A., Keiser, A. D.,
Mo, L., Averill, C., and Maynard, D. S.: The global soil community and its
influence on biogeochemistry, Science, 365, eaav0550, https://doi.org/10.1126/science.aav0550,
2019.
Delgado-Baquerizo, M., Powell, J. R., Hamonts, K., Reith, F., Mele, P.,
Brown, M. V., Dennis, P. G., Ferrari, B. C., Fitzgerald, A., Young, A.,
Singh, B. K., and Bissett, A.: Circular linkages between soil biodiversity,
fertility and plant productivity are limited to topsoil at the continental
scale, New Phytol., 215, 1186–1196, https://doi.org/10.1111/nph.14634, 2017.
de Vries, F. T., Manning, P., Tallowin, J. R. B., Mortimer, S. R., Pilgrim,
E. S., Harrison, K. A., Hobbs, P. J., Quirk, H., Shipley, B., Cornelissen,
J. H. C., Kattge, J., and Bardgett, R. D.: Abiotic drivers and plant traits
explain landscape-scale patterns in soil microbial communities, Ecol. Lett.,
15, 1230–1239, https://doi.org/10.1111/j.1461-0248.2012.01844.x, 2012.
Drenovsky, R. E., Steenwerth, K. L., Jackson, L. E., and Scow, K. M.: Land
use and climatic factors structure regional patterns in soil microbial
communities, Glob. Ecol. Biogeogr., 19, 27–39,
https://doi.org/10.1111/j.1466-8238.2009.00486.x, 2010a.
Drenovsky, R. E., Steenwerth, K. L., Jackson, L. E., and Scow, K. M.: Land
use and climatic factors structure regional patterns in soil microbial
communities, Glob. Ecol. Biogeogr., 19, 27–39, https://doi.org/10.1111/j.1466-8238.2009.00486.x,
2010b.
Fierer, N., Strickland, M. S., Liptzin, D., Bradford, M. A., and Cleveland,
C. C.: Global patterns in belowground communities, Ecol. Lett., 12,
1238–1249, https://doi.org/10.1111/j.1461-0248.2009.01360.x, 2009.
Frindte, K., Pape, R., Werner, K., Löffler, J., and Knief, C.:
Temperature and soil moisture control microbial community composition in an
arctic–alpine ecosystem along elevational and micro-topographic gradients,
ISME J., 13, 2031–2043, https://doi.org/10.1038/s41396-019-0409-9, 2019.
Frostegård, Å., Tunlid, A., and Bååth, E.: Use and misuse of
PLFA measurements in soils, Soil Biol. Biochem., 43, 1621–1625,
https://doi.org/10.1016/j.soilbio.2010.11.021, 2011.
Glassman, S. I., Weihe, C., Li, J., Albright, M. B. N., Looby, C. I.,
Martiny, A. C., Treseder, K. K., Allison, S. D., and Martiny, J. B. H.:
Decomposition responses to climate depend on microbial community
composition, P. Natl. Acad. Sci. USA, 115, 11994–11999, https://doi.org/10.1073/pnas.1811269115,
2018.
He, L., Mazza Rodrigues, J. L., Soudzilovskaia, N. A., Barceló, M.,
Olsson, P. A., Song, C., Tedersoo, L., Yuan, F., Yuan, F., Lipson, D. A., and
Xu, X.: Global biogeography of fungal and bacterial biomass carbon in
topsoil, Soil Biol. Biochem., 151, 108024, https://doi.org/10.1016/j.soilbio.2020.108024, 2020.
Jangid, K., Williams, M. A., Franzluebbers, A. J., Schmidt, T. M., Coleman,
D. C., and Whitman, W. B.: Land-use history has a stronger impact on soil
microbial community composition than aboveground vegetation and soil
properties, Soil Biol. Biochem., 43, 2184–2193,
https://doi.org/10.1016/j.soilbio.2011.06.022, 2011.
Jenny, H.: Factors of Soil Formation, Soil Sci., 52, 415,
https://doi.org/10.1097/00010694-194111000-00009, 1941.
Jiang, M., Medlyn, B. E., Drake, J. E., Duursma, R. A., Anderson, I. C.,
Barton, C. V. M., Boer, M. M., Carrillo, Y., Castañeda-Gómez, L.,
Collins, L., Crous, K. Y., De Kauwe, M. G., dos Santos, B. M., Emmerson, K.
M., Facey, S. L., Gherlenda, A. N., Gimeno, T. E., Hasegawa, S., Johnson, S.
N., Kännaste, A., Macdonald, C. A., Mahmud, K., Moore, B. D., Nazaries,
L., Neilson, E. H. J., Nielsen, U. N., Niinemets, Ü., Noh, N. J.,
Ochoa-Hueso, R., Pathare, V. S., Pendall, E., Pihlblad, J., Piñeiro, J.,
Powell, J. R., Power, S. A., Reich, P. B., Renchon, A. A., Riegler, M.,
Rinnan, R., Rymer, P. D., Salomón, R. L., Singh, B. K., Smith, B.,
Tjoelker, M. G., Walker, J. K. M., Wujeska-Klause, A., Yang, J., Zaehle, S.,
and Ellsworth, D. S.: The fate of carbon in a mature forest under carbon
dioxide enrichment, Nature, 580, 227–231, https://doi.org/10.1038/s41586-020-2128-9, 2020.
Klamer, M. and Bååth, E.: Estimation of conversion factors for
fungal biomass determination in compost using ergosterol and PLFA
18:2ω6,9, Soil Biol. Biochem., 36, 57–65,
https://doi.org/10.1016/j.soilbio.2003.08.019, 2004.
Lavahun, M. F. E., Joergensen, R. G., and Meyer, B.: Activity and biomass of
soil microorganisms at different depths, Biol. Fertil. Soils, 23, 38–42,
https://doi.org/10.1007/BF00335816, 1996.
Liang, C., Amelung, W., Lehmann, J., and Kästner, M.: Quantitative
assessment of microbial necromass contribution to soil organic matter, Glob.
Chang. Biol., 25, 3578–3590, https://doi.org/10.1111/gcb.14781, 2019.
Locey, K. J. and Lennon, J. T.: Scaling laws predict global microbial
diversity, P. Natl. Acad. Sci. USA, 113, 5970–5975, https://doi.org/10.1073/pnas.1521291113,
2016.
Malik, A. A., Chowdhury, S., Schlager, V., Oliver, A., Puissant, J.,
Vazquez, P. G. M., Jehmlich, N., von Bergen, M., Griffiths, R. I., and
Gleixner, G.: Soil fungal: Bacterial ratios are linked to altered carbon
cycling, Front. Microbiol., 7, 1247, https://doi.org/10.3389/fmicb.2016.01247, 2016.
Moore, J. C. and William Hunt, H.: Resource compartmentation and the
stability of real ecosystems, Nature, 333, 261–263, https://doi.org/10.1038/333261a0, 1988.
Moore, J. C., McCann, K., Setälä, H., and De Ruiter, P. C.: Top-down
is bottom-up: Does predation in the rhizosphere regulate aboveground
dynamics?, Ecology, 84, 846–857, https://doi.org/10.1890/0012-9658(2003)084[0846:TIBDPI]2.0.CO;2,
2003.
Romero-Olivares, A. L., Allison, S. D., and Treseder, K. K.: Soil microbes
and their response to experimental warming over time: A meta-analysis of
field studies, Soil Biol. Biochem., 107, 32–40, https://doi.org/10.1016/j.soilbio.2016.12.026, 2017.
Rousk, J. and Bååth, E.: Fungal biomass production and turnover in
soil estimated using the acetate-in-ergosterol technique, Soil Biol.
Biochem., 39, 2173–2177, https://doi.org/10.1016/j.soilbio.2007.03.023, 2007.
Rousk, J., Brookes, P. C., and Bååth, E.: Contrasting soil pH effects
on fungal and bacterial growth suggest functional redundancy in carbon
mineralization, Appl. Environ. Microbiol., 75, 1589–1596,
https://doi.org/10.1128/AEM.02775-08, 2009.
Rousk, J., Bååth, E., Brookes, P. C., Lauber, C. L., Lozupone, C.,
Caporaso, J. G., Knight, R., and Fierer, N.: Soil bacterial and fungal
communities across a pH gradient in an arable soil, ISME J., 4,
1340–1351, https://doi.org/10.1038/ismej.2010.58, 2010.
Sanderman, J., Hengl, T., and Fiske, G. J.: Soil carbon debt of 12,000 years
of human land use, P. Natl. Acad. Sci. USA, 114, 9575–9580,
https://doi.org/10.1073/pnas.1706103114, 2017.
Schimel, D., Stephens, B. B., and Fisher, J. B.: Effect of increasing CO2 on
the terrestrial carbon cycle, P. Natl. Acad. Sci. USA, 112, 436–441,
https://doi.org/10.1073/pnas.1407302112, 2015.
Sengupta, A., Fansler, S. J., Chu, R. K., Danczak, R. E., Garayburu-Caruso, V. A., Renteria, L., Song, H.-S., Toyoda, J., Wells, J., and Stegen, J. C.: Disturbance triggers non-linear microbe–environment feedbacks, Biogeosciences, 18, 4773–4789, https://doi.org/10.5194/bg-18-4773-2021, 2021.
Shi, Z., Crowell, S., Luo, Y., and Moore, B.: Model structures amplify
uncertainty in predicted soil carbon responses to climate change, Nat.
Commun., 9, 2171, https://doi.org/10.1038/s41467-018-04526-9, 2018.
Six, J., Frey, S. D., Thiet, R. K., and Batten, K. M.: Bacterial and Fungal
Contributions to Carbon Sequestration in Agroecosystems, Soil Sci. Soc. Am.
J., 70, 555, https://doi.org/10.2136/sssaj2004.0347, 2006.
Soares, M. and Rousk, J.: Microbial growth and carbon use efficiency in
soil: Links to fungal-bacterial dominance, SOC-quality and stoichiometry,
Soil Biol. Biochem., 131, 195–205, https://doi.org/10.1016/j.soilbio.2019.01.010, 2019.
Strickland, M. S. and Rousk, J.: Considering fungal: Bacterial dominance in
soils – Methods, controls, and ecosystem implications, Soil Biol. Biochem., 42, 1385–1395,
https://doi.org/10.1016/j.soilbio.2010.05.007, 2010.
Sulman, B. N., Phillips, R. P., Oishi, A. C., Shevliakova, E., and Pacala, S.
W.: Microbe-driven turnover offsets mineral-mediated storage of soil carbon
under elevated CO2, Nat. Clim. Chang., 4, 1385–1395, https://doi.org/10.1038/nclimate2436, 2014.
Tagesson, T., Schurgers, G., Horion, S., Ciais, P., Tian, F., Brandt, M.,
Ahlström, A., Wigneron, J. P., Ardö, J., Olin, S., Fan, L., Wu, Z.,
and Fensholt, R.: Recent divergence in the contributions of tropical and
boreal forests to the terrestrial carbon sink, Nat. Ecol. Evol., 4, 202–209,
https://doi.org/10.1038/s41559-019-1090-0, 2020.
Tedersoo, L., Bahram, M., Põlme, S., Kõljalg, U., Yorou, N. S.,
Wijesundera, R., Ruiz, L. V., Vasco-Palacios, A. M., Thu, P. Q., Suija, A.,
Smith, M. E., Sharp, C., Saluveer, E., Saitta, A., Rosas, M., Riit, T.,
Ratkowsky, D., Pritsch, K., Põldmaa, K., Piepenbring, M., Phosri, C.,
Peterson, M., Parts, K., Pärtel, K., Otsing, E., Nouhra, E., Njouonkou,
A. L., Nilsson, R. H., Morgado, L. N., Mayor, J., May, T. W., Majuakim, L.,
Lodge, D. J., Lee, S., Larsson, K. H., Kohout, P., Hosaka, K., Hiiesalu, I.,
Henkel, T. W., Harend, H., Guo, L. D., Greslebin, A., Grelet, G., Geml, J.,
Gates, G., Dunstan, W., Dunk, C., Drenkhan, R., Dearnaley, J., De Kesel, A.,
Dang, T., Chen, X., Buegger, F., Brearley, F. Q., Bonito, G., Anslan, S.,
Abell, S., and Abarenkov, K.: Global diversity and geography of soil fungi,
Science, 346, 1256688, https://doi.org/10.1126/science.1256688, 2014.
Terrer, C., Phillips, R. P., Hungate, B. A., Rosende, J., Pett-Ridge, J.,
Craig, M. E., van Groenigen, K. J., Keenan, T. F., Sulman, B. N., Stocker,
B. D., Reich, P. B., Pellegrini, A. F. A., Pendall, E., Zhang, H., Evans, R.
D., Carrillo, Y., Fisher, J. B., Van Sundert, K., Vicca, S., and Jackson, R.
B.: A trade-off between plant and soil carbon storage under elevated CO2,
Nature, 591, 599–603, https://doi.org/10.1038/s41586-021-03306-8, 2021.
van den Hoogen, J., Geisen, S., Routh, D., Ferris, H., Traunspurger, W.,
Wardle, D. A., de Goede, R. G. M., Adams, B. J., Ahmad, W., Andriuzzi, W.
S., Bardgett, R. D., Bonkowski, M., Campos-Herrera, R., Cares, J. E.,
Caruso, T., de Brito Caixeta, L., Chen, X., Costa, S. R., Creamer, R., Mauro
da Cunha Castro, J., Dam, M., Djigal, D., Escuer, M., Griffiths, B. S.,
Gutiérrez, C., Hohberg, K., Kalinkina, D., Kardol, P., Kergunteuil, A.,
Korthals, G., Krashevska, V., Kudrin, A. A., Li, Q., Liang, W., Magilton,
M., Marais, M., Martín, J. A. R., Matveeva, E., Mayad, E. H., Mulder,
C., Mullin, P., Neilson, R., Nguyen, T. A. D., Nielsen, U. N., Okada, H.,
Rius, J. E. P., Pan, K., Peneva, V., Pellissier, L., Carlos Pereira da
Silva, J., Pitteloud, C., Powers, T. O., Powers, K., Quist, C. W., Rasmann,
S., Moreno, S. S., Scheu, S., Setälä, H., Sushchuk, A., Tiunov, A.
V., Trap, J., van der Putten, W., Vestergård, M., Villenave, C.,
Waeyenberge, L., Wall, D. H., Wilschut, R., Wright, D. G., Yang, J., and
Crowther, T. W.: Soil nematode abundance and functional group composition at
a global scale, Nature, 572, 194–198, https://doi.org/10.1038/s41586-019-1418-6, 2019.
Van Der Heijden, M. G. A., Bardgett, R. D., and Van Straalen, N. M.: The
unseen majority: Soil microbes as drivers of plant diversity and
productivity in terrestrial ecosystems, Ecol. Lett., 11, 296–310,
https://doi.org/10.1111/j.1461-0248.2007.01139.x, 2008.
Waldrop, M. P., Holloway, J. M., Smith, D. B., Goldhaber, M. B., Drenovsky,
R. E., Scow, K. M., Dick, R., Howard, D., Wylie, B., and Grace, J. B.: The
interacting roles of climate, soils, and plant production on soil microbial
communities at a continental scale, Ecology, 98, 1957–1967, https://doi.org/10.1002/ecy.1883, 2017.
Wang, Q., Liu, S., and Tian, P.: Carbon quality and soil microbial property
control the latitudinal pattern in temperature sensitivity of soil microbial
respiration across Chinese forest ecosystems, Glob. Chang. Biol., 24, 2841–2849,
https://doi.org/10.1111/gcb.14105, 2018.
Waring, B. G., Averill, C., and Hawkes, C. V.: Differences in fungal and
bacterial physiology alter soil carbon and nitrogen cycling: Insights from
meta-analysis and theoretical models, Ecol. Lett., 16, 887–894,
https://doi.org/10.1111/ele.12125, 2013.
Wieder, W. R., Bonan, G. B., and Allison, S. D.: Global soil carbon
projections are improved by modelling microbial processes, Nat. Clim.
Chang., 3, 909–912, https://doi.org/10.1038/nclimate1951, 2013.
Wieder, W. R., Allison, S. D., Davidson, E. A., Georgiou, K., Hararuk, O.,
He, Y., Hopkins, F., Luo, Y., Smith, M. J., Sulman, B., Todd-Brown, K.,
Wang, Y. P., Xia, J., and Xu, X.: Explicitly representing soil microbial
processes in Earth system models, Global Biogeochem. Cycles, 29,
1782–1800, https://doi.org/10.1002/2015GB005188, 2015.
Yu, K.: Biogeography-of-soil-microbes, figshare [data set], https://doi.org/10.6084/m9.figshare.19556419, 2022.
Yu, K. and D'Odorico, P.: Hydraulic lift as a determinant of tree-grass
coexistence on savannas, New Phytol., 207, 1038–1051,
https://doi.org/10.1111/nph.13431, 2015.
Yu, K., Smith, W. K., Trugman, A. T., Condit, R., Hubbell, S. P., Sardans,
J., Peng, C., Zhu, K., Peñuelas, J., Cailleret, M., Levanic, T.,
Gessler, A., Schaub, M., Ferretti, M., and Anderegg, W. R. L.: Pervasive
decreases in living vegetation carbon turnover time across forest climate
zones, P. Natl. Acad. Sci. USA, 116, 24662–24667, https://doi.org/10.1073/pnas.1821387116, 2019.
Yue, H., Wang, M., Wang, S., Gilbert, J. A., Sun, X., Wu, L., Lin, Q., Hu,
Y., Li, X., He, Z., Zhou, J., and Yang, Y.: The microbe-mediated mechanisms
affecting topsoil carbon stock in Tibetan grasslands, ISME J., 9, 2012–2020,
https://doi.org/10.1038/ismej.2015.19, 2015.
Zhu, Q., Riley, W. J., and Tang, J.: A new theory of plant-microbe nutrient
competition resolves inconsistencies between observations and model
predictions, Ecol. Appl., 27, 875–886, https://doi.org/10.1002/eap.1490, 2017.
Short summary
We used a global-scale dataset for the surface topsoil (>3000 distinct observations of abundance of soil fungi versus bacteria) to generate the first quantitative map of soil fungal proportion across terrestrial ecosystems. We reveal striking latitudinal trends. Fungi dominated in regions with low mean annual temperature (MAT) and net primary productivity (NPP) and bacteria dominated in regions with high MAT and NPP.
We used a global-scale dataset for the surface topsoil (>3000 distinct observations of abundance...
Altmetrics
Final-revised paper
Preprint