the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
The biogeography of relative abundance of soil fungi versus bacteria in surface topsoil
Kailiang Yu
Johan van den Hoogen
Zhiqiang Wang
Colin Averill
Devin Routh
Gabriel Reuben Smith
Rebecca E. Drenovsky
Kate M. Scow
Fei Mo
Mark P. Waldrop
Yuanhe Yang
Weize Tang
Franciska T. De Vries
Richard D. Bardgett
Peter Manning
Felipe Bastida
Sara G. Baer
Elizabeth M. Bach
Carlos García
Qingkui Wang
Linna Ma
Baodong Chen
Xianjing He
Sven Teurlincx
Amber Heijboer
James A. Bradley
Thomas W. Crowther
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- Final revised paper (published on 22 Sep 2022)
- Supplement to the final revised paper
- Preprint (discussion started on 19 Apr 2022)
- Supplement to the preprint
Interactive discussion
Status: closed
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RC1: 'Comment on essd-2022-128', Anonymous Referee #1, 02 May 2022
Yu et al. generated the first high-resolution (1 km) explicit maps of soil fungal and bacterial relative abundance based on a dataset with more than three thousand observations by PLFA method. Besides the more data points, I believe the non-linear map is more accurate than previous linear one. Overall, the MS conducted a good work on data collection, statistic analysis, results presentation, and mechanism interpretation. This map is important for microbial representation in Earth System Models together with previous global map of microbial biomass. Here, I just have the following two very minor comments on this study.
P5 L157-161: The study used several global map layers of soil physical, chemical and nutrient properties, climate conditions, vegetative indices, radiation and topographic variables and anthropogenic covariates. Which dataset was used? I can not find the Supplementary Table 1 in the SUPPORTING ONLINE MATERIAL. If these 95 covariates were generated by the authors’ previous works? If not, I suggest that the author should provide the references.
P11 L295 & P12 L318-320: The current dataset gathered in China, USA, and Europe. Therefore, besides tropical regions, more works was also needed in boreal forest and tundra, where are also sensitive to climate change.
Citation: https://doi.org/10.5194/essd-2022-128-RC1 - AC1: 'Reply on RC1', Xianjin He, 13 Aug 2022
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RC2: 'Comment on essd-2022-128', Anonymous Referee #2, 29 Jul 2022
The manuscript studies the relative abundance of soil fungi and bacteria in top surface soil to improve predictions of soil organic matter turnover under current and future climate scenario. A strong non-linear response of fungal and bacterial abundance to environmental gradient like mean annual temperature (MAT) and net primary productivity (NPP) was observed. It has also used machine learning to link the varion in soil fungi and bacterial abundances to global variation in climate vegetation and soil variables. The article followed an earlier publication by He et al. (2020) but was more elaborate in its analysis using >3000 distinct observation of soil fungi and bacterial abundance and thus explains the entire output in a better detail, supported by elaborate statistical analysis.
Having said that, it is noted that the datasets are mostly restricted to US, Europe and East Asia (Fig. 1a). Considering the fact that agricultural interventions affect the soil fungal diversity, it is desirable that other regions of the world including South west Australia, sub-Saharan Africa, Patagonia and central Asia is not considered. While probably, the authors cannot be faulted for this because of the lack of literature in the global science webs, they would do better to mention this gap in the manuscript. Obviously, authors have used a stratified bootstrapping procedure (100 iterations) by randomly sampling 90% data with replacement. In any case, this gap in the report should be explained to the readers.
Authors have mentioned high resolution (1 km). Should it not be km2 if we consider grided map.
I have a few editorial corrections for the authors to consider”
Line 42: Replace ‘exchange’ with ‘cycling’
Line 44 and elsewhere in the text: Replace ‘decomposition; with ‘transformation’
Line 103: Replace ‘these’ with ‘the’
Line 227: Replace ‘land’ with ‘soil’
Line 298: Replace ‘potential’ with ‘potentially’
Citation: https://doi.org/10.5194/essd-2022-128-RC2 - AC2: 'Reply on RC2', Xianjin He, 13 Aug 2022