Articles | Volume 14, issue 9
https://doi.org/10.5194/essd-14-4339-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/essd-14-4339-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Data description paper
| 
22 Sep 2022
Data description paper |
| 22 Sep 2022
| 22 Sep 2022
The biogeography of relative abundance of soil fungi versus bacteria in surface topsoil
Kailiang Yu
CORRESPONDING AUTHOR
Institute of Integrative Biology, ETH Zürich, Zürich,
Switzerland
Johan van den Hoogen
Institute of Integrative Biology, ETH Zürich, Zürich,
Switzerland
Zhiqiang Wang
Sichuan Zoige Alpine Wetland Ecosystem National Observation and Research Station, Institute of Qinghai-Tibetan Plateau, Southwest Minzu University, Chengdu, China
Colin Averill
Institute of Integrative Biology, ETH Zürich, Zürich,
Switzerland
Devin Routh
Institute of Integrative Biology, ETH Zürich, Zürich,
Switzerland
Gabriel Reuben Smith
Department of Biology, Stanford University, Stanford, California, USA
Institute of Integrative Biology, ETH Zürich, Zürich,
Switzerland
Rebecca E. Drenovsky
Biology Department, John Carroll University, University Heights, Ohio, USA
Kate M. Scow
Department of Land, Air and Water Resources, University of California,
Davis, California, USA
Fei Mo
College of Agronomy, Northwest A&F University, Shaanxi, China
Mark P. Waldrop
U.S. Geological Survey, Geology, Minerals, Energy, and Geophysics
Science Center, Menlo Park, California, USA
Yuanhe Yang
State Key Laboratory of Vegetation and Environmental Change, Institute
of Botany, Chinese Academy of Sciences, Beijing, China
Weize Tang
South China Botanical Garden, University of Chinese Academy of Sciences, Beijing, China
Key Laboratory of Vegetation Restoration and Management of Degraded
Ecosystems, South China Botanical Garden, Chinese Academy of Sciences,
Guangzhou, China
Franciska T. De Vries
Institute of Biodiversity and Ecosystem Dynamics, University of
Amsterdam, Amsterdam, the Netherlands
Richard D. Bardgett
Department of Earth and Environmental Sciences, University of
Manchester, Oxford Road, Manchester, UK
Peter Manning
Department of Biological Sciences, University of Bergen, Bergen, Norway
Felipe Bastida
CEBAS-CSIC, Department of Soil and Water Conservation, Campus
Universitario de Espinardo, Murcia, Spain
Sara G. Baer
Kansas Biological Survey and Department of Ecology & Evolutionary
Biology, University of Kansas, Lawrence, Kansas, USA
Elizabeth M. Bach
The Nature Conservancy, Nachusa Grasslands, Franklin Grove, IL, USA
Carlos García
CEBAS-CSIC, Department of Soil and Water Conservation, Campus
Universitario de Espinardo, Murcia, Spain
Qingkui Wang
Huitong Experimental Station of Forest Ecology, CAS Key Laboratory of
Forest Ecology and Management, Institute of Applied Ecology, Shenyang,
China
Linna Ma
State Key Laboratory of Vegetation and Environmental Change, Institute
of Botany, Chinese Academy of Sciences, Beijing, China
Baodong Chen
State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China
College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, China
Xianjing He
Key Laboratory of the Three Gorges Reservoir Region's
Eco-Environment, Ministry of Education, Chongqing University, Chongqing,
China
Sven Teurlincx
Department of Aquatic Ecology, Netherlands Institute of Ecology
(NIOO-KNAW), Wageningen, the Netherlands
Amber Heijboer
Biometris, Wageningen University & Research, Wageningen,
the Netherlands
Ecology and Biodiversity Group, Department of Biology, Institute of
Environmental Biology, Utrecht University, Padualaan, the Netherlands
James A. Bradley
School of Geography, Queen Mary University of London, London, E1 4NS,
UK
Thomas W. Crowther
CORRESPONDING AUTHOR
Institute of Integrative Biology, ETH Zürich, Zürich,
Switzerland
Viewed
Total article views: 4,694 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 19 Apr 2022)
| HTML | XML | Total | Supplement | BibTeX | EndNote | |
|---|---|---|---|---|---|---|
| 3,385 | 1,205 | 104 | 4,694 | 322 | 75 | 98 |
- HTML: 3,385
- PDF: 1,205
- XML: 104
- Total: 4,694
- Supplement: 322
- BibTeX: 75
- EndNote: 98
Total article views: 3,323 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 22 Sep 2022)
| HTML | XML | Total | Supplement | BibTeX | EndNote | |
|---|---|---|---|---|---|---|
| 2,503 | 739 | 81 | 3,323 | 198 | 67 | 82 |
- HTML: 2,503
- PDF: 739
- XML: 81
- Total: 3,323
- Supplement: 198
- BibTeX: 67
- EndNote: 82
Total article views: 1,371 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 19 Apr 2022)
| HTML | XML | Total | Supplement | BibTeX | EndNote | |
|---|---|---|---|---|---|---|
| 882 | 466 | 23 | 1,371 | 124 | 8 | 16 |
- HTML: 882
- PDF: 466
- XML: 23
- Total: 1,371
- Supplement: 124
- BibTeX: 8
- EndNote: 16
Viewed (geographical distribution)
Total article views: 4,694 (including HTML, PDF, and XML)
Thereof 4,480 with geography defined
and 214 with unknown origin.
Total article views: 3,323 (including HTML, PDF, and XML)
Thereof 3,189 with geography defined
and 134 with unknown origin.
Total article views: 1,371 (including HTML, PDF, and XML)
Thereof 1,291 with geography defined
and 80 with unknown origin.
| Country | # | Views | % |
|---|
| Country | # | Views | % |
|---|
| Country | # | Views | % |
|---|
| Total: | 0 |
| HTML: | 0 |
| PDF: | 0 |
| XML: | 0 |
- 1
1
| Total: | 0 |
| HTML: | 0 |
| PDF: | 0 |
| XML: | 0 |
- 1
1
| Total: | 0 |
| HTML: | 0 |
| PDF: | 0 |
| XML: | 0 |
- 1
1
Cited
24 citations as recorded by crossref.
- Modified fungal diversity in dense clay subsoils after deep-banding organic substrate J. Vido et al. 10.1071/SR23203
- Assessment of Global Antibiotic Exposure Risk for Crops: Incorporating Soil Adsorption via Machine Learning H. Zhu et al. 10.1021/acs.est.4c03695
- Soil water status shapes nutrient cycling in agroecosystems from micrometer to landscape scales S. Bauke et al. 10.1002/jpln.202200357
- Tackling global biogeography and drivers of soil microbial dehalogenation traits and taxa: Insights from metagenomic profiling based on a curated dehalogenase database S. Li et al. 10.1016/j.soilbio.2024.109553
- Macroecology Differentiation Between Bacteria and Fungi in Topsoil Across the United States L. He et al. 10.1029/2023GB007706
- Deforestation impacts soil biodiversity and ecosystem services worldwide X. Qu et al. 10.1073/pnas.2318475121
- The apparent temperature sensitivity (Q10) of peat soil respiration: A synthesis study H. Liu et al. 10.1016/j.geoderma.2024.116844
- Differential spatial responses and assembly mechanisms of soil microbial communities across region-scale Taiga ecosystems Z. Liu et al. 10.1016/j.jenvman.2024.122653
- Responses of soil organic carbon compounds to phosphorus addition between tropical monoculture and multispecies forests Y. Li et al. 10.1016/j.scitotenv.2024.174672
- Snowmelt seepage fluxes of dissolved organic matter in forest and grassland – a molecular-level case study from the Hainich Critical Zone Exploratory, Germany C. Huang et al. 10.3389/feart.2024.1458322
- pH threshold in controlling dominant nitrification pathway in acidic soils M. Cao et al. 10.1016/j.agee.2024.109278
- Moving towards a mechanistic understanding of biostimulant impacts on soil properties and processes: a semi-systematic review D. Roche et al. 10.3389/fagro.2024.1271672
- Cascade effects of forest thinning on microbial composition and function of various tree species and multiple decomposition time series: Insights from deadwood decomposition in tropical forests D. Anderson & Y. Wu 10.1016/j.foreco.2024.121817
- Mineral protection explains the elevational variation of temperature sensitivity of soil carbon decomposition in the Eastern Himalaya L. Hou et al. 10.1016/j.apsoil.2024.105346
- Landscape-scale mapping of soil fungal distribution: proposing a new NGS-based approach D. Janowski & T. Leski 10.1038/s41598-023-37538-7
- SOIL «HEALTH» INDICATORS IN SOIL ASSESSMENT (REVIEW) P. Kozhevin 10.55959/MSU0137-0944-17-2023-78-2-16-25
- A global survey of host, aquatic, and soil microbiomes reveals shared abundance and genomic features between bacterial and fungal generalists D. Loos et al. 10.1016/j.celrep.2024.114046
- The Golden Goal of Soil Management: Disease-Suppressive Soils M. Sagova-Mareckova et al. 10.1094/PHYTO-09-22-0324-KD
- Revisiting soil fungal biomarkers and conversion factors: Interspecific variability in phospholipid fatty acids, ergosterol and rDNA copy numbers T. Camenzind et al. 10.1007/s42832-024-0243-5
- Soil Chemical Properties and Microbial Behavior under Short-Term Organic and Mineral Fertilization within Different Crops E. Dușa et al. 10.3390/agronomy13112837
- Divergent data-driven estimates of global soil respiration S. Hashimoto et al. 10.1038/s43247-023-01136-2
- Soil “Health” Indicators in Soil Assessment (Review) P. Kozhevin 10.3103/S0147687423020059
- Nitrous oxide and nitric oxide fluxes differ from tea plantation and tropical forest soils after nitrogen addition G. Toteva et al. 10.3389/ffgc.2024.1335775
- The Molecular Profile of Soil Microbial Communities Inhabiting a Cambrian Host Rock T. Huang et al. 10.3390/microorganisms12030513
24 citations as recorded by crossref.
- Modified fungal diversity in dense clay subsoils after deep-banding organic substrate J. Vido et al. 10.1071/SR23203
- Assessment of Global Antibiotic Exposure Risk for Crops: Incorporating Soil Adsorption via Machine Learning H. Zhu et al. 10.1021/acs.est.4c03695
- Soil water status shapes nutrient cycling in agroecosystems from micrometer to landscape scales S. Bauke et al. 10.1002/jpln.202200357
- Tackling global biogeography and drivers of soil microbial dehalogenation traits and taxa: Insights from metagenomic profiling based on a curated dehalogenase database S. Li et al. 10.1016/j.soilbio.2024.109553
- Macroecology Differentiation Between Bacteria and Fungi in Topsoil Across the United States L. He et al. 10.1029/2023GB007706
- Deforestation impacts soil biodiversity and ecosystem services worldwide X. Qu et al. 10.1073/pnas.2318475121
- The apparent temperature sensitivity (Q10) of peat soil respiration: A synthesis study H. Liu et al. 10.1016/j.geoderma.2024.116844
- Differential spatial responses and assembly mechanisms of soil microbial communities across region-scale Taiga ecosystems Z. Liu et al. 10.1016/j.jenvman.2024.122653
- Responses of soil organic carbon compounds to phosphorus addition between tropical monoculture and multispecies forests Y. Li et al. 10.1016/j.scitotenv.2024.174672
- Snowmelt seepage fluxes of dissolved organic matter in forest and grassland – a molecular-level case study from the Hainich Critical Zone Exploratory, Germany C. Huang et al. 10.3389/feart.2024.1458322
- pH threshold in controlling dominant nitrification pathway in acidic soils M. Cao et al. 10.1016/j.agee.2024.109278
- Moving towards a mechanistic understanding of biostimulant impacts on soil properties and processes: a semi-systematic review D. Roche et al. 10.3389/fagro.2024.1271672
- Cascade effects of forest thinning on microbial composition and function of various tree species and multiple decomposition time series: Insights from deadwood decomposition in tropical forests D. Anderson & Y. Wu 10.1016/j.foreco.2024.121817
- Mineral protection explains the elevational variation of temperature sensitivity of soil carbon decomposition in the Eastern Himalaya L. Hou et al. 10.1016/j.apsoil.2024.105346
- Landscape-scale mapping of soil fungal distribution: proposing a new NGS-based approach D. Janowski & T. Leski 10.1038/s41598-023-37538-7
- SOIL «HEALTH» INDICATORS IN SOIL ASSESSMENT (REVIEW) P. Kozhevin 10.55959/MSU0137-0944-17-2023-78-2-16-25
- A global survey of host, aquatic, and soil microbiomes reveals shared abundance and genomic features between bacterial and fungal generalists D. Loos et al. 10.1016/j.celrep.2024.114046
- The Golden Goal of Soil Management: Disease-Suppressive Soils M. Sagova-Mareckova et al. 10.1094/PHYTO-09-22-0324-KD
- Revisiting soil fungal biomarkers and conversion factors: Interspecific variability in phospholipid fatty acids, ergosterol and rDNA copy numbers T. Camenzind et al. 10.1007/s42832-024-0243-5
- Soil Chemical Properties and Microbial Behavior under Short-Term Organic and Mineral Fertilization within Different Crops E. Dușa et al. 10.3390/agronomy13112837
- Divergent data-driven estimates of global soil respiration S. Hashimoto et al. 10.1038/s43247-023-01136-2
- Soil “Health” Indicators in Soil Assessment (Review) P. Kozhevin 10.3103/S0147687423020059
- Nitrous oxide and nitric oxide fluxes differ from tea plantation and tropical forest soils after nitrogen addition G. Toteva et al. 10.3389/ffgc.2024.1335775
- The Molecular Profile of Soil Microbial Communities Inhabiting a Cambrian Host Rock T. Huang et al. 10.3390/microorganisms12030513
Latest update: 23 Nov 2024
Short summary
We used a global-scale dataset for the surface topsoil (>3000 distinct observations of abundance of soil fungi versus bacteria) to generate the first quantitative map of soil fungal proportion across terrestrial ecosystems. We reveal striking latitudinal trends. Fungi dominated in regions with low mean annual temperature (MAT) and net primary productivity (NPP) and bacteria dominated in regions with high MAT and NPP.
We used a global-scale dataset for the surface topsoil (>3000 distinct observations of abundance...
Altmetrics
Final-revised paper
Preprint