Articles | Volume 10, issue 4
https://doi.org/10.5194/essd-10-1859-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/essd-10-1859-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Review article
| 
16 Oct 2018
Review article |
| 16 Oct 2018
| 16 Oct 2018
A global compilation of coccolithophore calcification rates
Chris J. Daniels
National Oceanography Centre, Southampton, SO14 3ZH, UK
National Oceanography Centre, Southampton, SO14 3ZH, UK
The Lyell Centre for Earth and Marine Sciences and Technology,
Heriot-Watt University, Edinburgh, EH14 4AS, UK
William M. Balch
Bigelow Laboratory for Ocean Sciences, East Boothbay, ME 04544,
Maine, USA
Emilio Marañón
Departamento de Ecología y Biología Animal, Universidad
de Vigo, 36310 Vigo, Spain
Ocean and Earth Science, National Oceanography Centre Southampton,
University of Southampton, Southampton, SO14 3ZH, UK
Bruce C. Bowler
Bigelow Laboratory for Ocean Sciences, East Boothbay, ME 04544,
Maine, USA
Pedro Cermeño
Instituto de Cièncias del Mar, CSIC, E08003 Barcelona, Spain
Anastasia Charalampopoulou
Ocean and Earth Science, National Oceanography Centre Southampton,
University of Southampton, Southampton, SO14 3ZH, UK
David W. Crawford
Climate Chemistry Laboratory, Institute of Ocean Sciences,
Fisheries and Oceans Canada, P.O. Box 6000, Sidney, BC V8L 4B2 Canada
Department of Biology, University of Victoria, Victoria, British
Columbia V8W 2YA, Canada
Dave Drapeau
Bigelow Laboratory for Ocean Sciences, East Boothbay, ME 04544,
Maine, USA
Yuanyuan Feng
Tianjin University of Science and Technology, Tianjin Shi, 300457,
China
Ana Fernández
Departamento de Ecología y Biología Animal, Universidad
de Vigo, 36310 Vigo, Spain
Emilio Fernández
Departamento de Ecología y Biología Animal, Universidad
de Vigo, 36310 Vigo, Spain
Glaucia M. Fragoso
Trondhjem Biological Station, Department of Biology, Norwegian
University of Science and Technology, 7491 Trondheim, Norway
Natalia González
Biodiversity and Conservation Area, Universidad Rey Juan Carlos,
28933 Madrid, Spain
Lisa M. Graziano
Bigelow Laboratory for Ocean Sciences, East Boothbay, ME 04544,
Maine, USA
Rachel Heslop
Ocean and Earth Science, National Oceanography Centre Southampton,
University of Southampton, Southampton, SO14 3ZH, UK
Patrick M. Holligan
Ocean and Earth Science, National Oceanography Centre Southampton,
University of Southampton, Southampton, SO14 3ZH, UK
Jason Hopkins
Bigelow Laboratory for Ocean Sciences, East Boothbay, ME 04544,
Maine, USA
María Huete-Ortega
Department of Plant Sciences, University of Cambridge, Cambridge, CB2 3EA, UK
David A. Hutchins
Department of Biological Sciences, University of Southern
California, Los Angeles, CA 90089, USA
Phoebe J. Lam
Department of Ocean Sciences, University of California, Santa
Cruz, California, CA 95064, USA
Michael S. Lipsen
Department of Earth, Ocean and Atmospheric Sciences, University of British Columbia, Vancouver,
British Columbia BC V6T 1Z4, Canada
Daffne C. López-Sandoval
Red Sea Research Center, King Abdullah University of Science and
Technology, Thuwal 23955-6900, Saudi Arabia
Socratis Loucaides
National Oceanography Centre, Southampton, SO14 3ZH, UK
Ocean and Earth Science, National Oceanography Centre Southampton,
University of Southampton, Southampton, SO14 3ZH, UK
Adrian Marchetti
Department of Marine Sciences, University of North Carolina at
Chapel Hill, North Carolina, NC 27599, USA
Kyle M. J. Mayers
Ocean and Earth Science, National Oceanography Centre Southampton,
University of Southampton, Southampton, SO14 3ZH, UK
Andrew P. Rees
Plymouth Marine Laboratory, Prospect Place, West Hoe, Plymouth,
PL1 3DH, UK
Cristina Sobrino
Departamento de Ecología y Biología Animal, Universidad
de Vigo, 36310 Vigo, Spain
Eithne Tynan
Ocean and Earth Science, National Oceanography Centre Southampton,
University of Southampton, Southampton, SO14 3ZH, UK
Toby Tyrrell
Ocean and Earth Science, National Oceanography Centre Southampton,
University of Southampton, Southampton, SO14 3ZH, UK
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André Valente, Shubha Sathyendranath, Vanda Brotas, Steve Groom, Michael Grant, Thomas Jackson, Andrei Chuprin, Malcolm Taberner, Ruth Airs, David Antoine, Robert Arnone, William M. Balch, Kathryn Barker, Ray Barlow, Simon Bélanger, Jean-François Berthon, Şükrü Beşiktepe, Yngve Borsheim, Astrid Bracher, Vittorio Brando, Robert J. W. Brewin, Elisabetta Canuti, Francisco P. Chavez, Andrés Cianca, Hervé Claustre, Lesley Clementson, Richard Crout, Afonso Ferreira, Scott Freeman, Robert Frouin, Carlos García-Soto, Stuart W. Gibb, Ralf Goericke, Richard Gould, Nathalie Guillocheau, Stanford B. Hooker, Chuamin Hu, Mati Kahru, Milton Kampel, Holger Klein, Susanne Kratzer, Raphael Kudela, Jesus Ledesma, Steven Lohrenz, Hubert Loisel, Antonio Mannino, Victor Martinez-Vicente, Patricia Matrai, David McKee, Brian G. Mitchell, Tiffany Moisan, Enrique Montes, Frank Muller-Karger, Aimee Neeley, Michael Novak, Leonie O'Dowd, Michael Ondrusek, Trevor Platt, Alex J. Poulton, Michel Repecaud, Rüdiger Röttgers, Thomas Schroeder, Timothy Smyth, Denise Smythe-Wright, Heidi M. Sosik, Crystal Thomas, Rob Thomas, Gavin Tilstone, Andreia Tracana, Michael Twardowski, Vincenzo Vellucci, Kenneth Voss, Jeremy Werdell, Marcel Wernand, Bozena Wojtasiewicz, Simon Wright, and Giuseppe Zibordi
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A compiled set of in situ data is vital to evaluate the quality of ocean-colour satellite data records. Here we describe the global compilation of bio-optical in situ data (spanning from 1997 to 2021) used for the validation of the ocean-colour products from the ESA Ocean Colour Climate Change Initiative (OC-CCI). The compilation merges and harmonizes several in situ data sources into a simple format that could be used directly for the evaluation of satellite-derived ocean-colour data.
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Rebecca Chmiel, Nathan Lanning, Allison Laubach, Jong-Mi Lee, Jessica Fitzsimmons, Mariko Hatta, William Jenkins, Phoebe Lam, Matthew McIlvin, Alessandro Tagliabue, and Mak Saito
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Dissolved cobalt is present in trace amounts in seawater and is a necessary nutrient for marine microbes. On a transect from the Alaskan coast to Tahiti, we measured seawater concentrations of dissolved cobalt. Here, we describe several interesting features of the Pacific cobalt cycle including cobalt sources along the Alaskan coast and Hawaiian vents, deep-ocean particle formation, cobalt activity in low-oxygen regions, and how our samples compare to a global biogeochemical model’s predictions.
Darren R. Clark, Andrew P. Rees, Charissa M. Ferrera, Lisa Al-Moosawi, Paul J. Somerfield, Carolyn Harris, Graham D. Quartly, Stephen Goult, Glen Tarran, and Gennadi Lessin
Biogeosciences, 19, 1355–1376, https://doi.org/10.5194/bg-19-1355-2022, https://doi.org/10.5194/bg-19-1355-2022, 2022
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Measurements of microbial processes were made in the sunlit open ocean during a research cruise (AMT19) between the UK and Chile. These help us to understand how microbial communities maintain the function of remote ecosystems. We find that the nitrogen cycling microbes which produce nitrite respond to changes in the environment. Our insights will aid the development of models that aim to replicate and ultimately project how marine environments may respond to ongoing climate change.
Julie Dinasquet, Estelle Bigeard, Frédéric Gazeau, Farooq Azam, Cécile Guieu, Emilio Marañón, Céline Ridame, France Van Wambeke, Ingrid Obernosterer, and Anne-Claire Baudoux
Biogeosciences, 19, 1303–1319, https://doi.org/10.5194/bg-19-1303-2022, https://doi.org/10.5194/bg-19-1303-2022, 2022
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Saharan dust deposition of nutrients and trace metals is crucial to microbes in the Mediterranean Sea. Here, we tested the response of microbial and viral communities to simulated dust deposition under present and future conditions of temperature and pH. Overall, the effect of the deposition was dependent on the initial microbial assemblage, and future conditions will intensify microbial responses. We observed effects on trophic interactions, cascading all the way down to viral processes.
France Van Wambeke, Vincent Taillandier, Karine Desboeufs, Elvira Pulido-Villena, Julie Dinasquet, Anja Engel, Emilio Marañón, Céline Ridame, and Cécile Guieu
Biogeosciences, 18, 5699–5717, https://doi.org/10.5194/bg-18-5699-2021, https://doi.org/10.5194/bg-18-5699-2021, 2021
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Simultaneous in situ measurements of (dry and wet) atmospheric deposition and biogeochemical stocks and fluxes in the sunlit waters of the open Mediterranean Sea revealed complex physical and biological processes occurring within the mixed layer. Nitrogen (N) budgets were computed to compare the sources and sinks of N in the mixed layer. The transitory effect observed after a wet dust deposition impacted the microbial food web down to the deep chlorophyll maximum.
Frédéric Gazeau, France Van Wambeke, Emilio Marañón, Maria Pérez-Lorenzo, Samir Alliouane, Christian Stolpe, Thierry Blasco, Nathalie Leblond, Birthe Zäncker, Anja Engel, Barbara Marie, Julie Dinasquet, and Cécile Guieu
Biogeosciences, 18, 5423–5446, https://doi.org/10.5194/bg-18-5423-2021, https://doi.org/10.5194/bg-18-5423-2021, 2021
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Our study shows that the impact of dust deposition on primary production depends on the initial composition and metabolic state of the tested community and is constrained by the amount of nutrients added, to sustain both the fast response of heterotrophic prokaryotes and the delayed one of phytoplankton. Under future environmental conditions, heterotrophic metabolism will be more impacted than primary production, therefore reducing the capacity of surface waters to sequester anthropogenic CO2.
Luca Possenti, Ingunn Skjelvan, Dariia Atamanchuk, Anders Tengberg, Matthew P. Humphreys, Socratis Loucaides, Liam Fernand, and Jan Kaiser
Ocean Sci., 17, 593–614, https://doi.org/10.5194/os-17-593-2021, https://doi.org/10.5194/os-17-593-2021, 2021
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A Seaglider was deployed for 8 months in the Norwegian Sea mounting an oxygen and, for the first time, a CO2 optode and a chlorophyll fluorescence sensor. The oxygen and CO2 data were used to assess the spatial and temporal variability and calculate the net community production, N(O2) and N(CT). The dataset was used to calculate net community production from inventory changes, air–sea flux, diapycnal mixing and entrainment.
Guillaume Le Gland, Sergio M. Vallina, S. Lan Smith, and Pedro Cermeño
Geosci. Model Dev., 14, 1949–1985, https://doi.org/10.5194/gmd-14-1949-2021, https://doi.org/10.5194/gmd-14-1949-2021, 2021
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We present an ecological model called SPEAD wherein various phytoplankton compete for nutrients. Phytoplankton in SPEAD are characterized by two continuously distributed traits: optimal temperature and nutrient half-saturation. Trait diversity is sustained by allowing the traits to mutate at each generation. We show that SPEAD agrees well with a more classical discrete model for only a fraction of the cost. We also identify realistic values for the mutation rates to be used in future models.
Emilio Marañón, France Van Wambeke, Julia Uitz, Emmanuel S. Boss, Céline Dimier, Julie Dinasquet, Anja Engel, Nils Haëntjens, María Pérez-Lorenzo, Vincent Taillandier, and Birthe Zäncker
Biogeosciences, 18, 1749–1767, https://doi.org/10.5194/bg-18-1749-2021, https://doi.org/10.5194/bg-18-1749-2021, 2021
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The concentration of chlorophyll is commonly used as an indicator of the abundance of photosynthetic plankton (phytoplankton) in lakes and oceans. Our study investigates why a deep chlorophyll maximum, located near the bottom of the upper, illuminated layer develops in the Mediterranean Sea. We find that the acclimation of cells to low light is the main mechanism involved and that this deep maximum represents also a maximum in the biomass and carbon fixation activity of phytoplankton.
Joost de Vries, Fanny Monteiro, Glen Wheeler, Alex Poulton, Jelena Godrijan, Federica Cerino, Elisa Malinverno, Gerald Langer, and Colin Brownlee
Biogeosciences, 18, 1161–1184, https://doi.org/10.5194/bg-18-1161-2021, https://doi.org/10.5194/bg-18-1161-2021, 2021
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Coccolithophores are important calcifying phytoplankton with an overlooked life cycle. We compile a global dataset of marine coccolithophore abundance to investigate the environmental characteristics of each life cycle phase. We find that both phases contribute to coccolithophore abundance and that their different environmental preference increases coccolithophore habitat. Accounting for the life cycle of coccolithophores is thus crucial for understanding their ecology and biogeochemical impact.
Daisy Pickup and Toby Tyrrell
Biogeosciences Discuss., https://doi.org/10.5194/bg-2020-371, https://doi.org/10.5194/bg-2020-371, 2020
Revised manuscript not accepted
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Concentrations of chemical elements dissolved in seawater differ from place to place in the surface ocean. Understanding how they change, and why, is important, for instance to understand ocean carbon storage or to understand nutrient supply for life in the ocean. We used a new global dataset to study spatial changes of numerous elements, many not studied before. We find a common pattern: an increase from low to high latitudes, because deep water rises to the surface at high latitudes.
Hannah K. Donald, Gavin L. Foster, Nico Fröhberg, George E. A. Swann, Alex J. Poulton, C. Mark Moore, and Matthew P. Humphreys
Biogeosciences, 17, 2825–2837, https://doi.org/10.5194/bg-17-2825-2020, https://doi.org/10.5194/bg-17-2825-2020, 2020
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The boron isotope pH proxy is increasingly being used to reconstruct ocean pH in the past. Here we detail a novel analytical methodology for measuring the boron isotopic composition (δ11B) of diatom opal and apply this to the study of the diatom Thalassiosira weissflogii grown in culture over a range of pH. To our knowledge this is the first study of its kind and provides unique insights into the way in which diatoms incorporate boron and their potential as archives of palaeoclimate records.
Vanessa Joglar, Antero Prieto, Esther Barber-Lluch, Marta Hernández-Ruiz, Emilio Fernández, and Eva Teira
Biogeosciences, 17, 2807–2823, https://doi.org/10.5194/bg-17-2807-2020, https://doi.org/10.5194/bg-17-2807-2020, 2020
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Coastal marine ecosystems are among the most ecologically and economically productive areas providing a large fraction of ecosystem goods and services to human populations, and B vitamins have long been considered important growth factors for phytoplankton. Our findings indicate that the responses of microbial plankton to B-vitamin supply are mainly driven by the bacterial community composition and that microbial plankton in this area seems to be well adapted to cope with B-vitamin shortage.
Noelle A. Held, Eric A. Webb, Matthew M. McIlvin, David A. Hutchins, Natalie R. Cohen, Dawn M. Moran, Korinna Kunde, Maeve C. Lohan, Claire Mahaffey, E. Malcolm S. Woodward, and Mak A. Saito
Biogeosciences, 17, 2537–2551, https://doi.org/10.5194/bg-17-2537-2020, https://doi.org/10.5194/bg-17-2537-2020, 2020
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Trichodesmium is a globally important marine nitrogen fixer that stimulates primary production in the surface ocean. We surveyed metaproteomes of Trichodesmium populations across the North Atlantic and other oceans, and we found that they experience simultaneous phosphate and iron stress because of the biophysical limits of nutrient uptake. Importantly, nitrogenase was most abundant during co-stress, indicating the potential importance of this phenotype to global nitrogen and carbon cycling.
Antonio Tovar-Sánchez, Araceli Rodríguez-Romero, Anja Engel, Birthe Zäncker, Franck Fu, Emilio Marañón, María Pérez-Lorenzo, Matthieu Bressac, Thibaut Wagener, Sylvain Triquet, Guillaume Siour, Karine Desboeufs, and Cécile Guieu
Biogeosciences, 17, 2349–2364, https://doi.org/10.5194/bg-17-2349-2020, https://doi.org/10.5194/bg-17-2349-2020, 2020
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Residence times of particulate metals derived from aerosol deposition in the Sea Surface Microlayer of the Mediterranean Sea ranged from a couple of minutes (e.g., for Fe) to a few hours (e.g., for Cu). Microbial activity seems to play an important role in in this process and in the concentration and distribution of metals between diferent water layers.
Pieter Demuynck, Toby Tyrrell, Alberto Naveira Garabato, Mark Christopher Moore, and Adrian Peter Martin
Biogeosciences, 17, 2289–2314, https://doi.org/10.5194/bg-17-2289-2020, https://doi.org/10.5194/bg-17-2289-2020, 2020
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The availability of macronutrients N and Si is of key importance to sustain life in the Southern Ocean. N and Si are available in abundance at the southern boundary of the Southern Ocean due to constant supply from the deep ocean. In the more northern regions of the Southern Ocean, a decline in macronutrient concentration is noticed, especially strong for Si rather than N. This paper uses a simplified biogeochemical model to investigate processes responsible for this decline in concentration.
Xiangqi Yi, Fei-Xue Fu, David A. Hutchins, and Kunshan Gao
Biogeosciences, 17, 1169–1180, https://doi.org/10.5194/bg-17-1169-2020, https://doi.org/10.5194/bg-17-1169-2020, 2020
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Combined effects of warming and light intensity were estimated in N2-fixing cyanobacterium Trichodesmium. Its physiological responses to warming were significantly modulated by light, with growth peaking at 27 °C under the light-saturating condition but being non-responsive across the range of 23–31 °C under the light-limiting condition. Light shortage also weakened the acclimation ability of Trichodesmium to warming, making light-limited Trichodesmium more sensitive to acute temperature change.
Stephanie Dutkiewicz, Pedro Cermeno, Oliver Jahn, Michael J. Follows, Anna E. Hickman, Darcy A. A. Taniguchi, and Ben A. Ward
Biogeosciences, 17, 609–634, https://doi.org/10.5194/bg-17-609-2020, https://doi.org/10.5194/bg-17-609-2020, 2020
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Phytoplankton are an essential component of the marine food web and earth's carbon cycle. We use observations, ecological theory and a unique trait-based ecosystem model to explain controls on patterns of marine phytoplankton biodiversity. We find that different dimensions of diversity (size classes, biogeochemical functional groups, thermal norms) are controlled by a disparate combination of mechanisms. This may explain why previous studies of phytoplankton diversity had conflicting results.
Thomas Holding, Ian G. Ashton, Jamie D. Shutler, Peter E. Land, Philip D. Nightingale, Andrew P. Rees, Ian Brown, Jean-Francois Piolle, Annette Kock, Hermann W. Bange, David K. Woolf, Lonneke Goddijn-Murphy, Ryan Pereira, Frederic Paul, Fanny Girard-Ardhuin, Bertrand Chapron, Gregor Rehder, Fabrice Ardhuin, and Craig J. Donlon
Ocean Sci., 15, 1707–1728, https://doi.org/10.5194/os-15-1707-2019, https://doi.org/10.5194/os-15-1707-2019, 2019
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FluxEngine is an open-source software toolbox designed to allow for the easy and accurate calculation of air–sea gas fluxes. This article describes new functionality and capabilities, which include the ability to calculate fluxes for nitrous oxide and methane, optimisation for running FluxEngine on a stand-alone desktop computer, and extensive new features to support the in situ measurement community. Four research case studies are used to demonstrate these new features.
Xinwei Wang, Feixue Fu, Pingping Qu, Joshua D. Kling, Haibo Jiang, Yahui Gao, and David A. Hutchins
Biogeosciences, 16, 4393–4409, https://doi.org/10.5194/bg-16-4393-2019, https://doi.org/10.5194/bg-16-4393-2019, 2019
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In this study, we examine the responses of E. huxleyi to a future warmer and more thermally variable ocean. Elevated temperatures and thermal variation have negative effects on growth rate and physiology that are especially pronounced at high temperatures, but high-frequency thermal variation may reduce the risk of extreme high-temperature events. These findings have potentially large implications for ocean productivity and marine biogeochemical cycles under a future changing climate.
André Valente, Shubha Sathyendranath, Vanda Brotas, Steve Groom, Michael Grant, Malcolm Taberner, David Antoine, Robert Arnone, William M. Balch, Kathryn Barker, Ray Barlow, Simon Bélanger, Jean-François Berthon, Şükrü Beşiktepe, Yngve Borsheim, Astrid Bracher, Vittorio Brando, Elisabetta Canuti, Francisco Chavez, Andrés Cianca, Hervé Claustre, Lesley Clementson, Richard Crout, Robert Frouin, Carlos García-Soto, Stuart W. Gibb, Richard Gould, Stanford B. Hooker, Mati Kahru, Milton Kampel, Holger Klein, Susanne Kratzer, Raphael Kudela, Jesus Ledesma, Hubert Loisel, Patricia Matrai, David McKee, Brian G. Mitchell, Tiffany Moisan, Frank Muller-Karger, Leonie O'Dowd, Michael Ondrusek, Trevor Platt, Alex J. Poulton, Michel Repecaud, Thomas Schroeder, Timothy Smyth, Denise Smythe-Wright, Heidi M. Sosik, Michael Twardowski, Vincenzo Vellucci, Kenneth Voss, Jeremy Werdell, Marcel Wernand, Simon Wright, and Giuseppe Zibordi
Earth Syst. Sci. Data, 11, 1037–1068, https://doi.org/10.5194/essd-11-1037-2019, https://doi.org/10.5194/essd-11-1037-2019, 2019
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A compiled set of in situ data is useful to evaluate the quality of ocean-colour satellite data records. Here we describe the compilation of global bio-optical in situ data (spanning from 1997 to 2018) used for the validation of the ocean-colour products from the ESA Ocean Colour Climate Change Initiative (OC-CCI). The compilation merges and harmonizes several in situ data sources into a simple format that could be used directly for the evaluation of satellite-derived ocean-colour data.
Mingxi Yang, Thomas G. Bell, Ian J. Brown, James R. Fishwick, Vassilis Kitidis, Philip D. Nightingale, Andrew P. Rees, and Timothy J. Smyth
Biogeosciences, 16, 961–978, https://doi.org/10.5194/bg-16-961-2019, https://doi.org/10.5194/bg-16-961-2019, 2019
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We quantify the emissions and uptake of the greenhouse gases carbon dioxide and methane from the coastal seas of the UK over 1 year using the state-of-the-art eddy covariance technique. Our measurements show how these air–sea fluxes vary twice a day (tidal), diurnally (circadian) and seasonally. We also estimate the air–sea gas transfer velocity, which is essential for modelling and predicting coastal air-sea exchange.
Shanying Tong, David A. Hutchins, and Kunshan Gao
Biogeosciences, 16, 561–572, https://doi.org/10.5194/bg-16-561-2019, https://doi.org/10.5194/bg-16-561-2019, 2019
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Most previous studies concerning the effects of environmental changes on marine organisms have been carried out under
photosynthetically active radiation onlyconditions, with solar ultraviolet radiation (UVR) not being considered. In this study, we found that UVR can counteract the negative effects of the
greenhousetreatment on the calcification rate to photosynthesis rate ratio, and may be a key stressor when considering the impacts of future greenhouse conditions on E. huxleyi.
Jose Luis Otero-Ferrer, Pedro Cermeño, Antonio Bode, Bieito Fernández-Castro, Josep M. Gasol, Xosé Anxelu G. Morán, Emilio Marañon, Victor Moreira-Coello, Marta M. Varela, Marina Villamaña, and Beatriz Mouriño-Carballido
Biogeosciences, 15, 6199–6220, https://doi.org/10.5194/bg-15-6199-2018, https://doi.org/10.5194/bg-15-6199-2018, 2018
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The effect of inorganic nutrients on planktonic assemblages has been traditionally assessed by looking at concentrations rather than fluxes of nutrient supply. However, in near-steady-state systems such as subtropical gyres, nitrate concentrations are kept close to the detection limit due to phytoplankton uptake. Our results, based on direct measurements of nitrate diffusive fluxes, support the key role of nitrate supply in controlling the structure of marine picoplankton communities.
Samuel T. Wilson, Hermann W. Bange, Damian L. Arévalo-Martínez, Jonathan Barnes, Alberto V. Borges, Ian Brown, John L. Bullister, Macarena Burgos, David W. Capelle, Michael Casso, Mercedes de la Paz, Laura Farías, Lindsay Fenwick, Sara Ferrón, Gerardo Garcia, Michael Glockzin, David M. Karl, Annette Kock, Sarah Laperriere, Cliff S. Law, Cara C. Manning, Andrew Marriner, Jukka-Pekka Myllykangas, John W. Pohlman, Andrew P. Rees, Alyson E. Santoro, Philippe D. Tortell, Robert C. Upstill-Goddard, David P. Wisegarver, Gui-Ling Zhang, and Gregor Rehder
Biogeosciences, 15, 5891–5907, https://doi.org/10.5194/bg-15-5891-2018, https://doi.org/10.5194/bg-15-5891-2018, 2018
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To determine the variability between independent measurements of dissolved methane and nitrous oxide, seawater samples were analyzed by multiple laboratories. The results revealed the influences of the different parts of the analytical process, from the initial sample collection to the calculation of the final concentrations. Recommendations are made to improve dissolved methane and nitrous oxide measurements to help preclude future analytical discrepancies between laboratories.
Yuanyuan Feng, Michael Y. Roleda, Evelyn Armstrong, Cliff S. Law, Philip W. Boyd, and Catriona L. Hurd
Biogeosciences, 15, 581–595, https://doi.org/10.5194/bg-15-581-2018, https://doi.org/10.5194/bg-15-581-2018, 2018
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We conducted a series of incubation experiments to understand how the changes in five environmental drivers will affect the elemental composition of the calcifying phytoplankton species Emiliania huxleyi. These findings provide new diagnostic information to aid our understanding of how the physiology and the related marine biogeochemistry of the ecologically important species Emiliania huxleyi will respond to changes in different environmental drivers in the global climate change scenario.
Xin Lin, Ruiping Huang, Yan Li, Futian Li, Yaping Wu, David A. Hutchins, Minhan Dai, and Kunshan Gao
Biogeosciences, 15, 551–565, https://doi.org/10.5194/bg-15-551-2018, https://doi.org/10.5194/bg-15-551-2018, 2018
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We examine the effects of elevated CO2 on bacterioplankton community during a mesocosm experiment in subtropical, eutrophic coastal waters in southern China. We found that the elevated CO2 hardly altered the network structure of the bacterioplankton taxa present with high abundance but appeared to reassemble the community network of taxa with low abundance. Results suggest that the bacterioplankton community in this subtropical, high-nutrient coastal environment is insensitive to elevated CO2.
Yong Zhang, Feixue Fu, David A. Hutchins, and Kunshan Gao
Biogeosciences Discuss., https://doi.org/10.5194/bg-2018-11, https://doi.org/10.5194/bg-2018-11, 2018
Revised manuscript not accepted
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To investigate responses of the calcifying E. huxleyi to multiple environmental factors, we investigated its growth, POC and PIC quotas and photosynthesis parameter at different levels of CO2, light, dissolved inorganic nitrogen and phosphate concentrations. High CO2 (HC) and low nitrogen (LN) synergistically decreased growth rates, high light compensated for inhibition of low phosphate (LP) on growth rates at LC, but exacerbated inhibition of LP at HC. LN or LP increased PIC quotas and ETRmax.
Zhi Zhu, Pingping Qu, Jasmine Gale, Feixue Fu, and David A. Hutchins
Biogeosciences, 14, 5281–5295, https://doi.org/10.5194/bg-14-5281-2017, https://doi.org/10.5194/bg-14-5281-2017, 2017
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This study focused on the individual and interactive effects of warming and CO2 variations on the diatom Pseudo-nitzschia subcurvata and the prymnesiophyte Phaeocystis antarctica. The results showed that both optimum and maximum growth temperatures of P. subcurvata were significantly higher than those of P. antarctica. CO2 functional response curves at two temperatures showed a significant interactive effect between warming and CO2. This study can help us to predict what will happen in future.
Helen E. K. Smith, Alex J. Poulton, Rebecca Garley, Jason Hopkins, Laura C. Lubelczyk, Dave T. Drapeau, Sara Rauschenberg, Ben S. Twining, Nicholas R. Bates, and William M. Balch
Biogeosciences, 14, 4905–4925, https://doi.org/10.5194/bg-14-4905-2017, https://doi.org/10.5194/bg-14-4905-2017, 2017
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The Great Calcite Belt (GCB), a region of high calcite concentration from coccolithophores, covers 60 % of the Southern Ocean area. We examined the influence of temperature, macronutrients, and carbonate chemistry on the distribution of mineralizing phytoplankton in the GCB. Coccolithophores occupy a niche in the Southern Ocean after the diatom spring bloom depletes silicic acid. No single environmental variable holds a dominant influence over phytoplankton biogeography in summer GCB conditions.
Mak A. Saito, Abigail E. Noble, Nicholas Hawco, Benjamin S. Twining, Daniel C. Ohnemus, Seth G. John, Phoebe Lam, Tim M. Conway, Rod Johnson, Dawn Moran, and Matthew McIlvin
Biogeosciences, 14, 4637–4662, https://doi.org/10.5194/bg-14-4637-2017, https://doi.org/10.5194/bg-14-4637-2017, 2017
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Cobalt has the smallest oceanic inventory of all known inorganic micronutrients, and hence is particularly vulnerable to influence by internal oceanic processes. The stoichiometry of cobalt was studied in the North Atlantic, and interpreted with regard to the context of Redfield theory with a focus on biological uptake, scavenging, and the coupling between dissolved and particulate phases. The stoichiometry of cobalt accelerated towards the surface due to increased biological activity and use.
Xiaoni Cai, David A. Hutchins, Feixue Fu, and Kunshan Gao
Biogeosciences, 14, 4455–4466, https://doi.org/10.5194/bg-14-4455-2017, https://doi.org/10.5194/bg-14-4455-2017, 2017
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Trichodesmium is significant marine N2 fixer. We conducted short- and long-term UV exposure experiment to investigate how UV affects this organism. Our results showed N2 fixation and carbon fixation rates were significantly reduced under UV radiation. As a defense strategy, Trichodesmium is able to synthesize UV-absorbing compounds to protect from UV damage. Our results suggest that shipboard experiments in UV-opaque containers may have substantially overestimated in situ N2 fixation rate.
Abigail E. Noble, Daniel C. Ohnemus, Nicholas J. Hawco, Phoebe J. Lam, and Mak A. Saito
Biogeosciences, 14, 2715–2739, https://doi.org/10.5194/bg-14-2715-2017, https://doi.org/10.5194/bg-14-2715-2017, 2017
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This study examines sources and sinks of dissolved and labile cobalt in the North Atlantic Ocean. The North and South Atlantic are influenced differently by dust, coastal margin sources, biota, and suspended particles. Dissolved cobalt in both basins is driven by a coastal margin source, leading to large plumes emanating from the north and south African coasts. These plumes are comparable in size despite the high dust flux observed in the North Atlantic that is absent in the South Atlantic.
Rosie M. Sheward, Alex J. Poulton, Samantha J. Gibbs, Chris J. Daniels, and Paul R. Bown
Biogeosciences, 14, 1493–1509, https://doi.org/10.5194/bg-14-1493-2017, https://doi.org/10.5194/bg-14-1493-2017, 2017
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Our culture experiments on modern Coccolithophores find that physiology regulates shifts in the geometry of their carbonate shells (coccospheres) between growth phases. This provides a tool to access growth information in modern and past populations. Directly comparing modern species with fossil coccospheres derives a new proxy for investigating the physiology that underpins phytoplankton responses to environmental change through geological time.
Glaucia M. Fragoso, Alex J. Poulton, Igor M. Yashayaev, Erica J. H. Head, and Duncan A. Purdie
Biogeosciences, 14, 1235–1259, https://doi.org/10.5194/bg-14-1235-2017, https://doi.org/10.5194/bg-14-1235-2017, 2017
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This research describes a detailed analysis of current distributions of spring phytoplankton communities in the Labrador Sea based on 10 years of observations. Phytoplankton community composition varied mainly according to the contrasting hydrographical zones of the Labrador Sea. The taxonomic distinctions of these communities influenced the photosynthetic and biochemical signatures of near-surface waters, which may have a profound impact on the carbon cycle in high-latitude seas.
Virginia García-Bernal, Óscar Paz, and Pedro Cermeño
Biogeosciences Discuss., https://doi.org/10.5194/bg-2017-4, https://doi.org/10.5194/bg-2017-4, 2017
Manuscript not accepted for further review
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Marine diatoms are responsible for roughly 40 % of modern ocean primary production and contribute disproportionately to the drawdown of atmospheric carbon dioxide through the export of organic carbon into the deep sea and sediments. Over the past 40 Myr their rise to ecological prominence and consequential decline of coccolithophores is linked to the silicon to phosphorus weathering ratio, which controls the oceanic nutrient inventories and hence the competitive ability of diatoms.
Futian Li, Yaping Wu, David A. Hutchins, Feixue Fu, and Kunshan Gao
Biogeosciences, 13, 6247–6259, https://doi.org/10.5194/bg-13-6247-2016, https://doi.org/10.5194/bg-13-6247-2016, 2016
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Ongoing ocean acidification is being superimposed on the natural carbonate buffer system to influence the physiology of phytoplankton. Here, we show that coastal and oceanic diatoms respond differentially to diurnal fluctuating carbonate chemistry in current and ocean acidification scenarios. We propose that the ability to acclimate to dynamic carbonate chemistry may act as one determinant of the spatial distribution of diatom species.
Anastasia Charalampopoulou, Alex J. Poulton, Dorothee C. E. Bakker, Mike I. Lucas, Mark C. Stinchcombe, and Toby Tyrrell
Biogeosciences, 13, 5917–5935, https://doi.org/10.5194/bg-13-5917-2016, https://doi.org/10.5194/bg-13-5917-2016, 2016
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Coccolithophores are global calcifiers, potentially impacted by ocean acidity. Data from the Southern Ocean is scarce, though latitudinal gradients of acidity exist. We made measurements of calcification, species composition and physiochemical environment between America and the Antarctic Peninsula. Calcification and cell calcite declined to the south, though rates of coccolith production did not. Declining temperature and irradiance were more important in driving latitudinal changes than pH.
Guang Gao, Peng Jin, Nana Liu, Futian Li, Shanying Tong, David A. Hutchins, and Kunshan Gao
Biogeosciences Discuss., https://doi.org/10.5194/bg-2016-403, https://doi.org/10.5194/bg-2016-403, 2016
Manuscript not accepted for further review
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Our shipboard experiments showed high temperature and CO2 (HTHC) did not affect phytoplankton biomass at nearshore station but decreased it at offshore station. HT did not change dark respiration at nearshore station but enhanced it at offshore station. Our findings indicate that responses of coastal and offshore phytoplankton assemblages to ocean warming and acidification may be contrasting, with the pelagic phytoplankton communities being more sensitive to these two global change factors.
Xiaobo Jin, Chuanlian Liu, Alex J. Poulton, Minhan Dai, and Xianghui Guo
Biogeosciences, 13, 4843–4861, https://doi.org/10.5194/bg-13-4843-2016, https://doi.org/10.5194/bg-13-4843-2016, 2016
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The vertical structure of the coccolithophore community in the water column was controlled by trophic conditions, which were regulated by mesoscale eddies across the South China Sea basin. Three key species (Emiliania huxleyi, Gephyrocapsa oceanica, Florisphaera profunda) contributed roughly half of the surface ocean coccolith-calcite concentrations. E. huxleyi coccolith length is influenced by light and nutrients through the regulation of growth rates.
Fatima Abrantes, Pedro Cermeno, Cristina Lopes, Oscar Romero, Lélia Matos, Jolanda Van Iperen, Marta Rufino, and Vitor Magalhães
Biogeosciences, 13, 4099–4109, https://doi.org/10.5194/bg-13-4099-2016, https://doi.org/10.5194/bg-13-4099-2016, 2016
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Diatoms are the dominant primary producers of the most productive and best fishing areas of the modern ocean, the coastal upwelling systems. This turns them into important contributors to the biological pump and climate change. To help untangle their response to warming climate, we compare the worldwide diatom sedimentary abundance (SDA) to environmental variables and find that the capacity of diatoms to take up silicic acid sets an upper limit on global export production in these ocean regions.
Matthew P. Humphreys, Florence M. Greatrix, Eithne Tynan, Eric P. Achterberg, Alex M. Griffiths, Claudia H. Fry, Rebecca Garley, Alison McDonald, and Adrian J. Boyce
Earth Syst. Sci. Data, 8, 221–233, https://doi.org/10.5194/essd-8-221-2016, https://doi.org/10.5194/essd-8-221-2016, 2016
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This paper reports the stable isotope composition of dissolved inorganic carbon in seawater for a transect from west to east across the North Atlantic Ocean. The results can be used to study oceanic uptake of anthropogenic carbon dioxide, and also to investigate the natural biological carbon pump. We also provide stable DIC isotope results for two batches of Dickson seawater CRMs to enable intercomparisons with other studies.
André Valente, Shubha Sathyendranath, Vanda Brotas, Steve Groom, Michael Grant, Malcolm Taberner, David Antoine, Robert Arnone, William M. Balch, Kathryn Barker, Ray Barlow, Simon Bélanger, Jean-François Berthon, Şükrü Beşiktepe, Vittorio Brando, Elisabetta Canuti, Francisco Chavez, Hervé Claustre, Richard Crout, Robert Frouin, Carlos García-Soto, Stuart W. Gibb, Richard Gould, Stanford Hooker, Mati Kahru, Holger Klein, Susanne Kratzer, Hubert Loisel, David McKee, Brian G. Mitchell, Tiffany Moisan, Frank Muller-Karger, Leonie O'Dowd, Michael Ondrusek, Alex J. Poulton, Michel Repecaud, Timothy Smyth, Heidi M. Sosik, Michael Twardowski, Kenneth Voss, Jeremy Werdell, Marcel Wernand, and Giuseppe Zibordi
Earth Syst. Sci. Data, 8, 235–252, https://doi.org/10.5194/essd-8-235-2016, https://doi.org/10.5194/essd-8-235-2016, 2016
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A compiled set of in situ data is important to evaluate the quality of ocean-colour satellite data records. Here we describe the compilation of global bio-optical in situ data (spanning from 1997 to 2012) used for the validation of the ocean-colour products from the ESA Ocean Colour Climate Change Initiative (OC-CCI). The compilation merges and harmonizes several in situ data sources into a simple format that could be used directly for the evaluation of satellite-derived ocean-colour data.
Darren R. Clark, Claire E. Widdicombe, Andrew P. Rees, and E. Malcolm S. Woodward
Biogeosciences, 13, 2873–2888, https://doi.org/10.5194/bg-13-2873-2016, https://doi.org/10.5194/bg-13-2873-2016, 2016
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Based in the Mauritanian upwelling system, the article describes a Lagrangian study of biogeochemical processes within a freshly upwelled body of water as it advects offshore. We report rates of primary production, nitrogen assimilation, and regeneration and describe how these processes relate to the dynamics of the upwelling regime. This system is perhaps the least studied of the four major eastern boundary upwelling systems and so these measurements provide important new insights.
S. Z. Rosengard, P. J. Lam, W. M. Balch, M. E. Auro, S. Pike, D. Drapeau, and B. Bowler
Biogeosciences, 12, 3953–3971, https://doi.org/10.5194/bg-12-3953-2015, https://doi.org/10.5194/bg-12-3953-2015, 2015
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The transfer of particulate organic carbon (POC) into the deep ocean is an important atmospheric carbon dioxide sink. Observations from the Southern Ocean Great Calcite Belt region show that the relationship between POC and biogenic mineral fluxes varies with depth, between the surface and 1000m below. The results suggest that the transfer of POC into the deep ocean is more closely related to phytoplankton community structure than to mineral composition alone.
C. J. Daniels, A. J. Poulton, M. Esposito, M. L. Paulsen, R. Bellerby, M. St John, and A. P. Martin
Biogeosciences, 12, 2395–2409, https://doi.org/10.5194/bg-12-2395-2015, https://doi.org/10.5194/bg-12-2395-2015, 2015
C. J. Daniels, R. M. Sheward, and A. J. Poulton
Biogeosciences, 11, 6915–6925, https://doi.org/10.5194/bg-11-6915-2014, https://doi.org/10.5194/bg-11-6915-2014, 2014
D. R. Clark, I. J. Brown, A. P. Rees, P. J. Somerfield, and P. I. Miller
Biogeosciences, 11, 4985–5005, https://doi.org/10.5194/bg-11-4985-2014, https://doi.org/10.5194/bg-11-4985-2014, 2014
J. R. Young, A. J. Poulton, and T. Tyrrell
Biogeosciences, 11, 4771–4782, https://doi.org/10.5194/bg-11-4771-2014, https://doi.org/10.5194/bg-11-4771-2014, 2014
S. Richier, E. P. Achterberg, C. Dumousseaud, A. J. Poulton, D. J. Suggett, T. Tyrrell, M. V. Zubkov, and C. M. Moore
Biogeosciences, 11, 4733–4752, https://doi.org/10.5194/bg-11-4733-2014, https://doi.org/10.5194/bg-11-4733-2014, 2014
M. Ribas-Ribas, V. M. C. Rérolle, D. C. E. Bakker, V. Kitidis, G. A. Lee, I. Brown, E. P. Achterberg, N. J. Hardman-Mountford, and T. Tyrrell
Biogeosciences, 11, 4339–4355, https://doi.org/10.5194/bg-11-4339-2014, https://doi.org/10.5194/bg-11-4339-2014, 2014
A. J. Poulton, M. C. Stinchcombe, E. P. Achterberg, D. C. E. Bakker, C. Dumousseaud, H. E. Lawson, G. A. Lee, S. Richier, D. J. Suggett, and J. R. Young
Biogeosciences, 11, 3919–3940, https://doi.org/10.5194/bg-11-3919-2014, https://doi.org/10.5194/bg-11-3919-2014, 2014
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National forest carbon harvesting and allocation dataset for the period 2003 to 2018
Spatial mapping of key plant functional traits in terrestrial ecosystems across China
HiQ-LAI: a high-quality reprocessed MODIS leaf area index dataset with better spatiotemporal consistency from 2000 to 2022
EUPollMap: the European atlas of contemporary pollen distribution maps derived from an integrated Kriging interpolation approach
Reference maps of soil phosphorus for the pan-Amazon region
Mapping 24 woody plant species phenology and ground forest phenology over China from 1951 to 2020
Sensor-independent LAI/FPAR CDR: reconstructing a global sensor-independent climate data record of MODIS and VIIRS LAI/FPAR from 2000 to 2022
Investigating limnological processes and modern sedimentation at Lake Żabińskie, northeast Poland: a decade-long multi-variable dataset, 2012–2021
Spatiotemporally consistent global dataset of the GIMMS leaf area index (GIMMS LAI4g) from 1982 to 2020
Spatiotemporally consistent global dataset of the GIMMS Normalized Difference Vegetation Index (PKU GIMMS NDVI) from 1982 to 2022
CLIM4OMICS: a geospatially comprehensive climate and multi-OMICS database for maize phenotype predictability in the United States and Canada
Quantifying exchangeable base cations in permafrost: a reserve of nutrients about to thaw
Routine monitoring of western Lake Erie to track water quality changes associated with cyanobacterial harmful algal blooms
The Portuguese Large Wildfire Spread database (PT-FireSprd)
Thirty-meter map of young forest age in China
GRiMeDB: the Global River Methane Database of concentrations and fluxes
A gridded dataset of a leaf-age-dependent leaf area index seasonality product over tropical and subtropical evergreen broadleaved forests
Fire weather index data under historical and shared socioeconomic pathway projections in the 6th phase of the Coupled Model Intercomparison Project from 1850 to 2100
A remote-sensing-based dataset to characterize the ecosystem functioning and functional diversity in the Biosphere Reserve of the Sierra Nevada (southeastern Spain)
A global long-term, high-resolution satellite radar backscatter data record (1992–2022+): merging C-band ERS/ASCAT and Ku-band QSCAT
A global database on holdover time of lightning-ignited wildfires
Xueqin Yang, Qingling Sun, Liusheng Han, Jie Tian, Wenping Yuan, Liyang Liu, Wei Zheng, Mei Wang, Yunpeng Wang, and Xiuzhi Chen
Earth Syst. Sci. Data, 17, 3293–3314, https://doi.org/10.5194/essd-17-3293-2025, https://doi.org/10.5194/essd-17-3293-2025, 2025
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Understanding how leaves absorb carbon from the atmosphere is essential for predicting changes in global forests. Young leaves play a key role in this process, but their efficiency has been difficult to measure at large scales. Using satellite data, we developed a new method to track the seasonal patterns of young leaves’ photosynthetic capacity from 2001 to 2018. Our dataset helps scientists better understand forest growth and how ecosystems respond to climate change.
Rong Shang, Xudong Lin, Jing M. Chen, Yunjian Liang, Keyan Fang, Mingzhu Xu, Yulin Yan, Weimin Ju, Guirui Yu, Nianpeng He, Li Xu, Liangyun Liu, Jing Li, Wang Li, Jun Zhai, and Zhongmin Hu
Earth Syst. Sci. Data, 17, 3219–3241, https://doi.org/10.5194/essd-17-3219-2025, https://doi.org/10.5194/essd-17-3219-2025, 2025
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Forest age is critical for carbon cycle modeling and effective forest management. Existing datasets, however, have low spatial resolutions or limited temporal coverage. This study introduces China's annual forest age dataset (CAFA), spanning 1986–2022 at a 30 m resolution. By tracking forest disturbances, we annually update ages. Validation shows small errors for disturbed forests and larger errors for undisturbed forests. CAFA can enhance carbon cycle modeling and forest management in China.
Yanghui Kang, Maoya Bassiouni, Max Gaber, Xinchen Lu, and Trevor F. Keenan
Earth Syst. Sci. Data, 17, 3009–3046, https://doi.org/10.5194/essd-17-3009-2025, https://doi.org/10.5194/essd-17-3009-2025, 2025
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CEDAR-GPP provides spatiotemporally upscaled estimates of gross primary productivity (GPP) globally, uniquely incorporating the direct effect of elevated atmospheric CO2 on photosynthesis. This dataset was produced by upscaling eddy covariance data with machine learning and a broad range of satellite and climate variables. Available at monthly and 0.05° resolution from 1982 to 2020, CEDAR-GPP offers critical insights into ecosystem–climate interactions and the global carbon cycle.
Anna C. Talucci, Michael M. Loranty, Jean E. Holloway, Brendan M. Rogers, Heather D. Alexander, Natalie Baillargeon, Jennifer L. Baltzer, Logan T. Berner, Amy Breen, Leya Brodt, Brian Buma, Jacqueline Dean, Clement J. F. Delcourt, Lucas R. Diaz, Catherine M. Dieleman, Thomas A. Douglas, Gerald V. Frost, Benjamin V. Gaglioti, Rebecca E. Hewitt, Teresa Hollingsworth, M. Torre Jorgenson, Mark J. Lara, Rachel A. Loehman, Michelle C. Mack, Kristen L. Manies, Christina Minions, Susan M. Natali, Jonathan A. O'Donnell, David Olefeldt, Alison K. Paulson, Adrian V. Rocha, Lisa B. Saperstein, Tatiana A. Shestakova, Seeta Sistla, Oleg Sizov, Andrey Soromotin, Merritt R. Turetsky, Sander Veraverbeke, and Michelle A. Walvoord
Earth Syst. Sci. Data, 17, 2887–2909, https://doi.org/10.5194/essd-17-2887-2025, https://doi.org/10.5194/essd-17-2887-2025, 2025
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Wildfires have the potential to accelerate permafrost thaw and the associated feedbacks to climate change. We assembled a dataset of permafrost thaw depth measurements from burned and unburned sites contributed by researchers from across the northern high-latitude region. We estimated maximum thaw depth for each measurement, which addresses a key challenge: the ability to assess impacts of wildfire on maximum thaw depth when measurement timing varies.
Tianjing Ren and Andong Cai
Earth Syst. Sci. Data, 17, 2873–2885, https://doi.org/10.5194/essd-17-2873-2025, https://doi.org/10.5194/essd-17-2873-2025, 2025
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This study compiles a global database of soil dissolved organic carbon (DOC) concentrations, a key factor in soil health and climate change. Using machine learning, it identifies the most influential factors affecting soil DOC levels and maps global DOC patterns. The findings help guide soil management and climate strategies, with the dataset available for further research.
Emma Rehn, Haidee Cadd, Scott Mooney, Tim J. Cohen, Henry Munack, Alexandru T. Codilean, Matthew Adeleye, Kristen K. Beck, Mark Constantine IV, Chris Gouramanis, Johanna M. Hanson, Penelope J. Jones, A. Peter Kershaw, Lydia Mackenzie, Maame Maisie, Michela Mariani, Kia Matley, David McWethy, Keely Mills, Patrick Moss, Nicholas R. Patton, Cassandra Rowe, Janelle Stevenson, John Tibby, and Janet Wilmshurst
Earth Syst. Sci. Data, 17, 2681–2692, https://doi.org/10.5194/essd-17-2681-2025, https://doi.org/10.5194/essd-17-2681-2025, 2025
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This paper presents SahulCHAR, a new collection of palaeofire (ancient fire) records from Australia, New Guinea, and New Zealand. SahulCHAR version 1 contains 687 records of sedimentary charcoal or black carbon, including digitized data, records from existing databases, and original author-submitted data. SahulCHAR is a much-needed update to past charcoal compilations that will also provide greater representation of records from this region in future global syntheses to understand past fire.
Judith Vogt, Martijn M. T. A. Pallandt, Luana S. Basso, Abdullah Bolek, Kseniia Ivanova, Mark Schlutow, Gerardo Celis, McKenzie Kuhn, Marguerite Mauritz, Edward A. G. Schuur, Kyle Arndt, Anna-Maria Virkkala, Isabel Wargowsky, and Mathias Göckede
Earth Syst. Sci. Data, 17, 2553–2573, https://doi.org/10.5194/essd-17-2553-2025, https://doi.org/10.5194/essd-17-2553-2025, 2025
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We present a meta-dataset of greenhouse gas observations in the Arctic and boreal regions, including information on sites where greenhouse gases have been measured using different measurement techniques. We provide a novel repository of metadata to facilitate synthesis efforts for regions undergoing rapid environmental change. The meta-dataset shows where measurements are missing and will be updated as new measurements are published.
Qing Ying, Benjamin Poulter, Jennifer D. Watts, Kyle A. Arndt, Anna-Maria Virkkala, Lori Bruhwiler, Youmi Oh, Brendan M. Rogers, Susan M. Natali, Hilary Sullivan, Amanda Armstrong, Eric J. Ward, Luke D. Schiferl, Clayton D. Elder, Olli Peltola, Annett Bartsch, Ankur R. Desai, Eugénie Euskirchen, Mathias Göckede, Bernhard Lehner, Mats B. Nilsson, Matthias Peichl, Oliver Sonnentag, Eeva-Stiina Tuittila, Torsten Sachs, Aram Kalhori, Masahito Ueyama, and Zhen Zhang
Earth Syst. Sci. Data, 17, 2507–2534, https://doi.org/10.5194/essd-17-2507-2025, https://doi.org/10.5194/essd-17-2507-2025, 2025
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We present daily methane (CH4) fluxes of northern wetlands at 10 km resolution during 2016–2022 (WetCH4) derived from a novel machine learning framework. We estimated an average annual CH4 emission of 22.8 ± 2.4 Tg CH4 yr−1 (15.7–51.6 Tg CH4 yr−1). Emissions were intensified in 2016, 2020, and 2022, with the largest interannual variation coming from Western Siberia. Continued, all-season tower observations and improved soil moisture products are needed for future improvement of CH4 upscaling.
Alba Viana-Soto and Cornelius Senf
Earth Syst. Sci. Data, 17, 2373–2404, https://doi.org/10.5194/essd-17-2373-2025, https://doi.org/10.5194/essd-17-2373-2025, 2025
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Europe's forests are undergoing complex changes in response to increasing disturbances driven by climate and land use changes. Here, we present the European Forest Disturbance Atlas, a satellite-based approach for mapping annual forest disturbances across continental Europe from 1985 onwards. Maps provide insights into the year of disturbance occurrence, the actual frequency of disturbances, severity and the underlying causal agent, thus contributing to a future monitoring system envisioned for Europe.
Katharina Jentzsch, Lona van Delden, Matthias Fuchs, and Claire C. Treat
Earth Syst. Sci. Data, 17, 2331–2372, https://doi.org/10.5194/essd-17-2331-2025, https://doi.org/10.5194/essd-17-2331-2025, 2025
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Methane is a greenhouse gas that contributes to global warming, but we do not fully understand how much is released from natural sources like wetlands. To measure methane over large areas, many measurements are needed, often from small chambers that are placed on the ground. However, different researchers use different measurement setups, making it hard to combine data. We surveyed 36 researchers about their methods, summarized the responses, and identified ways to make the data more comparable.
Laura Schild, Peter Ewald, Chenzhi Li, Raphaël Hébert, Thomas Laepple, and Ulrike Herzschuh
Earth Syst. Sci. Data, 17, 2007–2033, https://doi.org/10.5194/essd-17-2007-2025, https://doi.org/10.5194/essd-17-2007-2025, 2025
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This study reconstructed vegetation and tree cover in the Northern Hemisphere from a harmonized dataset of pollen counts from sediment and peat cores for the past 14 000 years. A model was applied to correct for differences in pollen production between different plants, and modern remote-sensing forest cover was used to validate the reconstructed tree cover. Accurate data on past vegetation are invaluable for the investigation of vegetation–climate dynamics and the validation of vegetation models.
Simeon Lisovski, Alexandra Runge, Iuliia Shevtsova, Nele Landgraf, Anne Morgenstern, Ronald Reagan Okoth, Matthias Fuchs, Nikolay Lashchinskiy, Carl Stadie, Alison Beamish, Ulrike Herzschuh, Guido Grosse, and Birgit Heim
Earth Syst. Sci. Data, 17, 1707–1730, https://doi.org/10.5194/essd-17-1707-2025, https://doi.org/10.5194/essd-17-1707-2025, 2025
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The Lena Delta is the largest river delta in the Arctic and represents a biodiversity hotspot. Here, we describe multiple field datasets and a detailed habitat classification map for the Lena Delta. We present context and methods of these openly available datasets and show how they can improve our understanding of the rapidly changing Arctic tundra system.
Sijia Li and Hongliang Fang
Earth Syst. Sci. Data, 17, 1347–1366, https://doi.org/10.5194/essd-17-1347-2025, https://doi.org/10.5194/essd-17-1347-2025, 2025
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Leaf inclination angle (LIA) is a vital trait in radiative transfer, rainfall interception, evapotranspiration, photosynthesis, and hydrological processes. However, global LIA knowledge is still lacking. This study generated the first global 500 m LIA products by gap-filling LIA measurement data. The global LIA is 41.47° ± 9.55° and increases with latitude. LIA products could enhance our understanding of global LIA and assist remote sensing retrieval and land surface modeling studies.
Xufeng Wang, Tao Che, Jingfeng Xiao, Tonghong Wang, Junlei Tan, Yang Zhang, Zhiguo Ren, Liying Geng, Haibo Wang, Ziwei Xu, Shaomin Liu, and Xin Li
Earth Syst. Sci. Data, 17, 1329–1346, https://doi.org/10.5194/essd-17-1329-2025, https://doi.org/10.5194/essd-17-1329-2025, 2025
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In this study, carbon flux and auxiliary meteorological data are post-processed to create an analysis-ready dataset for 34 sites across six ecosystems in the Heihe River basin. Overall, 18 sites have multi-year observations, while 16 were observed only during the 2012 growing season, totaling 1513 site months. This dataset can be used to explore carbon exchange, assess ecosystem responses to climate change, support upscaling studies, and evaluate carbon cycle models.
Hirofumi Hashimoto, Weile Wang, Taejin Park, Sepideh Khajehei, Kazuhito Ichii, Andrew Michaelis, Alberto Guzman, Ramakrishna Nemani, Margaret Torn, Koong Yi, and Ian Brosnan
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2025-33, https://doi.org/10.5194/essd-2025-33, 2025
Revised manuscript accepted for ESSD
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We create the GeoNEX Coincident Ground Observations dataset (GeCGO) by extracting point data at observational network sites across Americas from the gridded GeoNEX products. The GeoNEX dataset is the high temporal frequent dataset of the latest geostationary satellites observations. We also release the software, GeoNEXTools, that helps handling the GeCGO data. GeCGO data and GeoNEXTools could help scientists use geostationary satellite data at their interested ground observational sites.
Masooma Batool, Fanny J. Sarrazin, and Rohini Kumar
Earth Syst. Sci. Data, 17, 881–916, https://doi.org/10.5194/essd-17-881-2025, https://doi.org/10.5194/essd-17-881-2025, 2025
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Our paper presents a reconstruction and analysis of the gridded P surplus in European landscapes from 1850 to 2019 at a 5 arcmin resolution. By utilizing 48 different estimates, we account for uncertainties in major components of the P surplus. Our findings highlight substantial historical changes, with the total P surplus in the EU 27 tripling over 170 years. Our dataset enables flexible aggregation at various spatial scales, providing critical insights for land and water management strategies.
Thomas Dirnböck, Michael Bahn, Eugenio Diaz-Pines, Ika Djukic, Michael Englisch, Karl Gartner, Günther Gollobich, Johannes Ingrisch, Barbara Kitzler, Karl Knaebel, Johannes Kobler, Andreas Maier, Armin Malli, Ivo Offenthaler, Johannes Peterseil, Gisela Pröll, Sarah Venier, Christoph Wohner, Sophie Zechmeister-Boltenstern, Anita Zolles, and Stephan Glatzel
Earth Syst. Sci. Data, 17, 685–702, https://doi.org/10.5194/essd-17-685-2025, https://doi.org/10.5194/essd-17-685-2025, 2025
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Long-term observation sites have been established in six Austrian locations, covering major ecosystem types such as forests, grasslands, and wetlands. The purpose of these observations is to measure baselines for assessing the impacts of extreme climate events on the carbon cycle. The collected datasets include meteorological variables, soil temperature and moisture, carbon dioxide fluxes, and tree stem growth in forests at a resolution of 15–60 min between 2019 and 2021.
Masahito Ueyama, Yuta Takao, Hiromi Yazawa, Makiko Tanaka, Hironori Yabuki, Tomo’omi Kumagai, Hiroki Iwata, Md. Abdul Awal, Mingyuan Du, Yoshinobu Harazono, Yoshiaki Hata, Takashi Hirano, Tsutom Hiura, Reiko Ide, Sachinobu Ishida, Mamoru Ishikawa, Kenzo Kitamura, Yuji Kominami, Shujiro Komiya, Ayumi Kotani, Yuta Inoue, Takashi Machimura, Kazuho Matsumoto, Yojiro Matsuura, Yasuko Mizoguchi, Shohei Murayama, Hirohiko Nagano, Taro Nakai, Tatsuro Nakaji, Ko Nakaya, Shinjiro Ohkubo, Takeshi Ohta, Keisuke Ono, Taku M. Saitoh, Ayaka Sakabe, Takanori Shimizu, Seiji Shimoda, Michiaki Sugita, Kentaro Takagi, Yoshiyuki Takahashi, Naoya Takamura, Satoru Takanashi, Takahiro Takimoto, Yukio Yasuda, Qinxue Wang, Jun Asanuma, Hideo Hasegawa, Tetsuya Hiyama, Yoshihiro Iijima, Shigeyuki Ishidoya, Masayuki Itoh, Tomomichi Kato, Hiroaki Kondo, Yoshiko Kosugi, Tomonori Kume, Takahisa Maeda, Trofim Maximov, Ryo Moriwaki, Hiroyuki Muraoka, Roman Petrov, Jun Suzuki, Shingo Taniguchi, and Kazuhito Ichii
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-615, https://doi.org/10.5194/essd-2024-615, 2025
Revised manuscript accepted for ESSD
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The JapanFlux2024 dataset, created through collaboration across Japan and East Asia, includes eddy covariance data from 79 sites spanning 652 site-years (1990–2023). This comprehensive dataset offers valuable insights into energy, water, and CO2 fluxes, supporting research on land-atmosphere interactions and process models. Compatible with FLUXNET, it fosters global collaboration and advances research in environmental science and regional climate dynamics.
Gudeta Weldesemayat Sileshi, Edmundo Barrios, Johannes Lehmann, and Francesco Nicola Tubiello
Earth Syst. Sci. Data, 17, 369–391, https://doi.org/10.5194/essd-17-369-2025, https://doi.org/10.5194/essd-17-369-2025, 2025
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Agricultural, fishery, forestry and agro-processing activities produce large quantities of residues, by-products and waste materials every year. Here, we present a global organic matter database (OMD), the first of its kind, consolidating estimates of residues and by-products potentially available for use in a circular bio-economy. It also provides definitions, typologies and methods to aid consistent classification, estimation and reporting of the various residues and by-products.
Kelly S. Aho, Kaelin M. Cawley, Robert T. Hensley, Robert O. Hall Jr., Walter K. Dodds, and Keli J. Goodman
Earth Syst. Sci. Data, 16, 5563–5578, https://doi.org/10.5194/essd-16-5563-2024, https://doi.org/10.5194/essd-16-5563-2024, 2024
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Gas exchange is fundamental to many biogeochemical processes in streams and depends on the degree of gas saturation and the gas transfer velocity (k). Currently, k is harder to measure than concentration. Here, we present a processing pipeline to estimate k from tracer-gas experiments conducted in 22 streams by the National Ecological Observatory Network. The processed dataset (n = 339) represents the largest compilation of standardized k estimates available.
Yifang Shi and W. Daniel Kissling
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-488, https://doi.org/10.5194/essd-2024-488, 2024
Revised manuscript accepted for ESSD
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We present a new set of multi-temporal LiDAR metrics of ecosystem structure derived from four national ALS surveys of the Netherlands (AHN1–AHN4), capturing vegetation height, cover, and structural variability over the past two decades (1998–2022). Around 70 TB point clouds have been processed to read-to-use raster layers at 10 m resolution (~ 59 GB), enabling a wide use and uptake of ecosystem structure information in biodiversity and habitat monitoring, ecosystem and carbon dynamic modelling.
Miina Rautiainen, Aarne Hovi, Daniel Schraik, Jan Hanuš, Petr Lukeš, Zuzana Lhotáková, and Lucie Homolová
Earth Syst. Sci. Data, 16, 5069–5087, https://doi.org/10.5194/essd-16-5069-2024, https://doi.org/10.5194/essd-16-5069-2024, 2024
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Radiative transfer models play a key role in monitoring vegetation using remote sensing data such as satellite or airborne images. The development of these models has been hindered by a lack of comprehensive ground reference data on structural and spectral characteristics of forests. Here, we reported datasets on the structural and spectral properties of temperate, hemiboreal, and boreal European forest stands. We anticipate that these data will have wide use in remote sensing applications.
Ruxandra-Maria Zotta, Leander Moesinger, Robin van der Schalie, Mariette Vreugdenhil, Wolfgang Preimesberger, Thomas Frederikse, Richard de Jeu, and Wouter Dorigo
Earth Syst. Sci. Data, 16, 4573–4617, https://doi.org/10.5194/essd-16-4573-2024, https://doi.org/10.5194/essd-16-4573-2024, 2024
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VODCA v2 is a dataset providing vegetation indicators for long-term ecosystem monitoring. VODCA v2 comprises two products: VODCA CXKu, spanning 34 years of observations (1987–2021), suitable for monitoring upper canopy dynamics, and VODCA L (2010–2021), for above-ground biomass monitoring. VODCA v2 has lower noise levels than the previous product version and provides valuable insights into plant water dynamics and biomass changes, even in areas where optical data are limited.
Peiyu Cao, Bo Yi, Franco Bilotto, Carlos Gonzalez Fischer, Mario Herrero, and Chaoqun Lu
Earth Syst. Sci. Data, 16, 4557–4572, https://doi.org/10.5194/essd-16-4557-2024, https://doi.org/10.5194/essd-16-4557-2024, 2024
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This article presents a spatially explicit time series dataset reconstructing crop-specific phosphorus fertilizer application rates, timing, and methods at a 4 km × 4 km resolution in the United States from 1850 to 2022. We comprehensively characterized the spatio-temporal dynamics of P fertilizer management over the last 170 years by considering cross-crop variations. This dataset will greatly contribute to the field of agricultural sustainability assessment and Earth system modeling.
Chad A. Burton, Sami W. Rifai, Luigi J. Renzullo, and Albert I. J. M. Van Dijk
Earth Syst. Sci. Data, 16, 4389–4416, https://doi.org/10.5194/essd-16-4389-2024, https://doi.org/10.5194/essd-16-4389-2024, 2024
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Understanding vegetation response to environmental change requires accurate, long-term data on vegetation condition (VC). We evaluated existing satellite VC datasets over Australia and found them lacking, so we developed a new VC dataset for Australia, AusENDVI. It can be used for studying Australia's changing vegetation dynamics and downstream impacts on the carbon and water cycles, and it provides a reliable foundation for further research into the drivers of vegetation change.
Xiaoran Zhu, Dong Chen, Maruko Kogure, Elizabeth Hoy, Logan T. Berner, Amy L. Breen, Abhishek Chatterjee, Scott J. Davidson, Gerald V. Frost, Teresa N. Hollingsworth, Go Iwahana, Randi R. Jandt, Anja N. Kade, Tatiana V. Loboda, Matt J. Macander, Michelle Mack, Charles E. Miller, Eric A. Miller, Susan M. Natali, Martha K. Raynolds, Adrian V. Rocha, Shiro Tsuyuzaki, Craig E. Tweedie, Donald A. Walker, Mathew Williams, Xin Xu, Yingtong Zhang, Nancy French, and Scott Goetz
Earth Syst. Sci. Data, 16, 3687–3703, https://doi.org/10.5194/essd-16-3687-2024, https://doi.org/10.5194/essd-16-3687-2024, 2024
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The Arctic tundra is experiencing widespread physical and biological changes, largely in response to warming, yet scientific understanding of tundra ecology and change remains limited due to relatively limited accessibility and studies compared to other terrestrial biomes. To support synthesis research and inform future studies, we created the Synthesized Alaskan Tundra Field Dataset (SATFiD), which brings together field datasets and includes vegetation, active-layer, and fire properties.
Yishuo Cui, Shouzhi Chen, Yufeng Gong, Mingwei Li, Zitong Jia, Yuyu Zhou, and Yongshuo H. Fu
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-225, https://doi.org/10.5194/essd-2024-225, 2024
Revised manuscript accepted for ESSD
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Global changes have significantly altered vegetation phenology, affecting terrestrial carbon cycle. While various remote-sensing-based phenology datasets exist, they often suffer from inconsistencies and uncertainties. To address this, we developed a new phenology dataset spanning 1982 to 2022 using a reliability ensemble averaging method. Validated against ground data, our dataset demonstrates substantially improved accuracy, providing a novel and reliable source for global ecological studies.
Chu Zou, Shanshan Du, Xinjie Liu, and Liangyun Liu
Earth Syst. Sci. Data, 16, 2789–2809, https://doi.org/10.5194/essd-16-2789-2024, https://doi.org/10.5194/essd-16-2789-2024, 2024
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To obtain a temporally consistent satellite solar-induced chlorophyll fluorescence
(SIF) product (TCSIF), we corrected for time degradation of GOME-2A using a pseudo-invariant method. After the correction, the global SIF grew by 0.70 % per year from 2007 to 2021, and 62.91 % of vegetated regions underwent an increase in SIF. The dataset is a promising tool for monitoring global vegetation variation and will advance our understanding of vegetation's photosynthetic activities at a global scale.
(SIF) product (TCSIF), we corrected for time degradation of GOME-2A using a pseudo-invariant method. After the correction, the global SIF grew by 0.70 % per year from 2007 to 2021, and 62.91 % of vegetated regions underwent an increase in SIF. The dataset is a promising tool for monitoring global vegetation variation and will advance our understanding of vegetation's photosynthetic activities at a global scale.
Hanqin Tian, Naiqing Pan, Rona L. Thompson, Josep G. Canadell, Parvadha Suntharalingam, Pierre Regnier, Eric A. Davidson, Michael Prather, Philippe Ciais, Marilena Muntean, Shufen Pan, Wilfried Winiwarter, Sönke Zaehle, Feng Zhou, Robert B. Jackson, Hermann W. Bange, Sarah Berthet, Zihao Bian, Daniele Bianchi, Alexander F. Bouwman, Erik T. Buitenhuis, Geoffrey Dutton, Minpeng Hu, Akihiko Ito, Atul K. Jain, Aurich Jeltsch-Thömmes, Fortunat Joos, Sian Kou-Giesbrecht, Paul B. Krummel, Xin Lan, Angela Landolfi, Ronny Lauerwald, Ya Li, Chaoqun Lu, Taylor Maavara, Manfredi Manizza, Dylan B. Millet, Jens Mühle, Prabir K. Patra, Glen P. Peters, Xiaoyu Qin, Peter Raymond, Laure Resplandy, Judith A. Rosentreter, Hao Shi, Qing Sun, Daniele Tonina, Francesco N. Tubiello, Guido R. van der Werf, Nicolas Vuichard, Junjie Wang, Kelley C. Wells, Luke M. Western, Chris Wilson, Jia Yang, Yuanzhi Yao, Yongfa You, and Qing Zhu
Earth Syst. Sci. Data, 16, 2543–2604, https://doi.org/10.5194/essd-16-2543-2024, https://doi.org/10.5194/essd-16-2543-2024, 2024
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Atmospheric concentrations of nitrous oxide (N2O), a greenhouse gas 273 times more potent than carbon dioxide, have increased by 25 % since the preindustrial period, with the highest observed growth rate in 2020 and 2021. This rapid growth rate has primarily been due to a 40 % increase in anthropogenic emissions since 1980. Observed atmospheric N2O concentrations in recent years have exceeded the worst-case climate scenario, underscoring the importance of reducing anthropogenic N2O emissions.
Daju Wang, Peiyang Ren, Xiaosheng Xia, Lei Fan, Zhangcai Qin, Xiuzhi Chen, and Wenping Yuan
Earth Syst. Sci. Data, 16, 2465–2481, https://doi.org/10.5194/essd-16-2465-2024, https://doi.org/10.5194/essd-16-2465-2024, 2024
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This study generated a high-precision dataset, locating forest harvested carbon and quantifying post-harvest wood emissions for various uses. It enhances our understanding of forest harvesting and post-harvest carbon dynamics in China, providing essential data for estimating the forest ecosystem carbon budget and emphasizing wood utilization's impact on carbon emissions.
Nannan An, Nan Lu, Weiliang Chen, Yongzhe Chen, Hao Shi, Fuzhong Wu, and Bojie Fu
Earth Syst. Sci. Data, 16, 1771–1810, https://doi.org/10.5194/essd-16-1771-2024, https://doi.org/10.5194/essd-16-1771-2024, 2024
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This study generated a spatially continuous plant functional trait dataset (~1 km) in China in combination with field observations, environmental variables and vegetation indices using machine learning methods. Results showed that wood density, leaf P concentration and specific leaf area showed good accuracy with an average R2 of higher than 0.45. This dataset could provide data support for development of Earth system models to predict vegetation distribution and ecosystem functions.
Kai Yan, Jingrui Wang, Rui Peng, Kai Yang, Xiuzhi Chen, Gaofei Yin, Jinwei Dong, Marie Weiss, Jiabin Pu, and Ranga B. Myneni
Earth Syst. Sci. Data, 16, 1601–1622, https://doi.org/10.5194/essd-16-1601-2024, https://doi.org/10.5194/essd-16-1601-2024, 2024
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Variations in observational conditions have led to poor spatiotemporal consistency in leaf area index (LAI) time series. Using prior knowledge, we leveraged high-quality observations and spatiotemporal correlation to reprocess MODIS LAI, thereby generating HiQ-LAI, a product that exhibits fewer abnormal fluctuations in time series. Reprocessing was done on Google Earth Engine, providing users with convenient access to this value-added data and facilitating large-scale research and applications.
Fabio Oriani, Gregoire Mariethoz, and Manuel Chevalier
Earth Syst. Sci. Data, 16, 731–742, https://doi.org/10.5194/essd-16-731-2024, https://doi.org/10.5194/essd-16-731-2024, 2024
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Modern and fossil pollen data contain precious information for reconstructing the climate and environment of the past. However, these data are only achieved for single locations with no continuity in space. We present here a systematic atlas of 194 digital maps containing the spatial estimation of contemporary pollen presence over Europe. This dataset constitutes a free and ready-to-use tool to study climate, biodiversity, and environment in time and space.
João Paulo Darela-Filho, Anja Rammig, Katrin Fleischer, Tatiana Reichert, Laynara Figueiredo Lugli, Carlos Alberto Quesada, Luis Carlos Colocho Hurtarte, Mateus Dantas de Paula, and David M. Lapola
Earth Syst. Sci. Data, 16, 715–729, https://doi.org/10.5194/essd-16-715-2024, https://doi.org/10.5194/essd-16-715-2024, 2024
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Phosphorus (P) is crucial for plant growth, and scientists have created models to study how it interacts with carbon cycle in ecosystems. To apply these models, it is important to know the distribution of phosphorus in soil. In this study we estimated the distribution of phosphorus in the Amazon region. The results showed a clear gradient of soil development and P content. These maps can help improve ecosystem models and generate new hypotheses about phosphorus availability in the Amazon.
Mengyao Zhu, Junhu Dai, Huanjiong Wang, Juha M. Alatalo, Wei Liu, Yulong Hao, and Quansheng Ge
Earth Syst. Sci. Data, 16, 277–293, https://doi.org/10.5194/essd-16-277-2024, https://doi.org/10.5194/essd-16-277-2024, 2024
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This study utilized 24,552 in situ phenology observation records from the Chinese Phenology Observation Network to model and map 24 woody plant species phenology and ground forest phenology over China from 1951 to 2020. These phenology maps are the first gridded, independent and reliable phenology data sources for China, offering a high spatial resolution of 0.1° and an average deviation of about 10 days. It contributes to more comprehensive research on plant phenology and climate change.
Jiabin Pu, Kai Yan, Samapriya Roy, Zaichun Zhu, Miina Rautiainen, Yuri Knyazikhin, and Ranga B. Myneni
Earth Syst. Sci. Data, 16, 15–34, https://doi.org/10.5194/essd-16-15-2024, https://doi.org/10.5194/essd-16-15-2024, 2024
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Long-term global LAI/FPAR products provide the fundamental dataset for accessing vegetation dynamics and studying climate change. This study develops a sensor-independent LAI/FPAR climate data record based on the integration of Terra-MODIS/Aqua-MODIS/VIIRS LAI/FPAR standard products and applies advanced gap-filling techniques. The SI LAI/FPAR CDR provides a valuable resource for researchers studying vegetation dynamics and their relationship to climate change in the 21st century.
Wojciech Tylmann, Alicja Bonk, Dariusz Borowiak, Paulina Głowacka, Kamil Nowiński, Joanna Piłczyńska, Agnieszka Szczerba, and Maurycy Żarczyński
Earth Syst. Sci. Data, 15, 5093–5103, https://doi.org/10.5194/essd-15-5093-2023, https://doi.org/10.5194/essd-15-5093-2023, 2023
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We present a dataset from the decade-long monitoring of Lake Żabińskie, a hardwater and eutrophic lake in northeast Poland. The lake contains varved sediments, which form a unique archive of past environmental variability. The monitoring program was designed to capture a pattern of relationships between meteorological conditions, limnological processes, and modern sedimentation and to verify if meteorological and limnological phenomena can be precisely tracked with varves.
Sen Cao, Muyi Li, Zaichun Zhu, Zhe Wang, Junjun Zha, Weiqing Zhao, Zeyu Duanmu, Jiana Chen, Yaoyao Zheng, Yue Chen, Ranga B. Myneni, and Shilong Piao
Earth Syst. Sci. Data, 15, 4877–4899, https://doi.org/10.5194/essd-15-4877-2023, https://doi.org/10.5194/essd-15-4877-2023, 2023
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The long-term global leaf area index (LAI) products are critical for characterizing vegetation dynamics under environmental changes. This study presents an updated GIMMS LAI product (GIMMS LAI4g; 1982−2020) based on PKU GIMMS NDVI and massive Landsat LAI samples. With higher accuracy than other LAI products, GIMMS LAI4g removes the effects of orbital drift and sensor degradation in AVHRR data. It has better temporal consistency before and after 2000 and a more reasonable global vegetation trend.
Muyi Li, Sen Cao, Zaichun Zhu, Zhe Wang, Ranga B. Myneni, and Shilong Piao
Earth Syst. Sci. Data, 15, 4181–4203, https://doi.org/10.5194/essd-15-4181-2023, https://doi.org/10.5194/essd-15-4181-2023, 2023
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Long-term global Normalized Difference Vegetation Index (NDVI) products support the understanding of changes in vegetation under environmental changes. This study generates a consistent global NDVI product (PKU GIMMS NDVI) from 1982–2022 that eliminates the issue of orbital drift and sensor degradation in Advanced Very High Resolution Radiometer (AVHRR) data. More accurate than its predecessor (GIMMS NDVI3g), it shows high temporal consistency with MODIS NDVI in describing vegetation trends.
Parisa Sarzaeim, Francisco Muñoz-Arriola, Diego Jarquin, Hasnat Aslam, and Natalia De Leon Gatti
Earth Syst. Sci. Data, 15, 3963–3990, https://doi.org/10.5194/essd-15-3963-2023, https://doi.org/10.5194/essd-15-3963-2023, 2023
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A genomic, phenomic, and climate database for maize phenotype predictability in the US and Canada is introduced. The database encompasses climate from multiple sources and OMICS from the Genomes to Fields initiative (G2F) data from 2014 to 2021, including codes for input data quality and consistency controls. Earth system modelers and breeders can use CLIM4OMICS since it interconnects the climate and biological system sciences. CLIM4OMICS is designed to foster phenotype predictability.
Elisabeth Mauclet, Maëlle Villani, Arthur Monhonval, Catherine Hirst, Edward A. G. Schuur, and Sophie Opfergelt
Earth Syst. Sci. Data, 15, 3891–3904, https://doi.org/10.5194/essd-15-3891-2023, https://doi.org/10.5194/essd-15-3891-2023, 2023
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Permafrost ecosystems are limited in nutrients for vegetation development and constrain the biological activity to the active layer. Upon Arctic warming, permafrost degradation exposes organic and mineral soil material that may directly influence the capacity of the soil to retain key nutrients for vegetation growth and development. Here, we demonstrate that the average total exchangeable nutrient density (Ca, K, Mg, and Na) is more than 2 times higher in the permafrost than in the active layer.
Anna G. Boegehold, Ashley M. Burtner, Andrew C. Camilleri, Glenn Carter, Paul DenUyl, David Fanslow, Deanna Fyffe Semenyuk, Casey M. Godwin, Duane Gossiaux, Thomas H. Johengen, Holly Kelchner, Christine Kitchens, Lacey A. Mason, Kelly McCabe, Danna Palladino, Dack Stuart, Henry Vanderploeg, and Reagan Errera
Earth Syst. Sci. Data, 15, 3853–3868, https://doi.org/10.5194/essd-15-3853-2023, https://doi.org/10.5194/essd-15-3853-2023, 2023
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Western Lake Erie suffers from cyanobacterial harmful algal blooms (HABs) despite decades of international management efforts. In response, the US National Oceanic and Atmospheric Administration (NOAA) Great Lakes Environmental Research Laboratory (GLERL) and the Cooperative Institute for Great Lakes Research (CIGLR) created an annual sampling program to detect, monitor, assess, and predict HABs. Here we describe the data collected from this monitoring program from 2012 to 2021.
Akli Benali, Nuno Guiomar, Hugo Gonçalves, Bernardo Mota, Fábio Silva, Paulo M. Fernandes, Carlos Mota, Alexandre Penha, João Santos, José M. C. Pereira, and Ana C. L. Sá
Earth Syst. Sci. Data, 15, 3791–3818, https://doi.org/10.5194/essd-15-3791-2023, https://doi.org/10.5194/essd-15-3791-2023, 2023
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We reconstructed the spread of 80 large wildfires that burned recently in Portugal and calculated metrics that describe how wildfires behave, such as rate of spread, growth rate, and energy released. We describe the fire behaviour distribution using six percentile intervals that can be easily communicated to both research and management communities. The database will help improve our current knowledge on wildfire behaviour and support better decision making.
Yuelong Xiao, Qunming Wang, Xiaohua Tong, and Peter M. Atkinson
Earth Syst. Sci. Data, 15, 3365–3386, https://doi.org/10.5194/essd-15-3365-2023, https://doi.org/10.5194/essd-15-3365-2023, 2023
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Forest age is closely related to forest production, carbon cycles, and other ecosystem services. Existing stand age products in China derived from remote-sensing images are of a coarse spatial resolution and are not suitable for applications at the regional scale. Here, we mapped young forest ages across China at an unprecedented fine spatial resolution of 30 m. The overall accuracy (OA) of the generated map of young forest stand ages across China was 90.28 %.
Emily H. Stanley, Luke C. Loken, Nora J. Casson, Samantha K. Oliver, Ryan A. Sponseller, Marcus B. Wallin, Liwei Zhang, and Gerard Rocher-Ros
Earth Syst. Sci. Data, 15, 2879–2926, https://doi.org/10.5194/essd-15-2879-2023, https://doi.org/10.5194/essd-15-2879-2023, 2023
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The Global River Methane Database (GRiMeDB) presents CH4 concentrations and fluxes for flowing waters and concurrent measures of CO2, N2O, and several physicochemical variables, plus information about sample locations and methods used to measure gas fluxes. GRiMeDB is intended to increase opportunities to understand variation in fluvial CH4, test hypotheses related to greenhouse gas dynamics, and reduce uncertainty in future estimates of gas emissions from world streams and rivers.
Xueqin Yang, Xiuzhi Chen, Jiashun Ren, Wenping Yuan, Liyang Liu, Juxiu Liu, Dexiang Chen, Yihua Xiao, Qinghai Song, Yanjun Du, Shengbiao Wu, Lei Fan, Xiaoai Dai, Yunpeng Wang, and Yongxian Su
Earth Syst. Sci. Data, 15, 2601–2622, https://doi.org/10.5194/essd-15-2601-2023, https://doi.org/10.5194/essd-15-2601-2023, 2023
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We developed the first time-mapped, continental-scale gridded dataset of monthly leaf area index (LAI) in three leaf age cohorts (i.e., young, mature, and old) from 2001–2018 data (referred to as Lad-LAI). The seasonality of three LAI cohorts from the new Lad-LAI product agrees well at eight sites with very fine-scale collections of monthly LAI. The proposed satellite-based approaches can provide references for mapping finer spatiotemporal-resolution LAI products with different leaf age cohorts.
Yann Quilcaille, Fulden Batibeniz, Andreia F. S. Ribeiro, Ryan S. Padrón, and Sonia I. Seneviratne
Earth Syst. Sci. Data, 15, 2153–2177, https://doi.org/10.5194/essd-15-2153-2023, https://doi.org/10.5194/essd-15-2153-2023, 2023
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We present a new database of four annual fire weather indicators over 1850–2100 and over all land areas. In a 3°C warmer world with respect to preindustrial times, the mean fire weather would increase on average by at least 66% in both intensity and duration and even triple for 1-in-10-year events. The dataset is a freely available resource for fire danger studies and beyond, highlighting that the best course of action would require limiting global warming as much as possible.
Beatriz P. Cazorla, Javier Cabello, Andrés Reyes, Emilio Guirado, Julio Peñas, Antonio J. Pérez-Luque, and Domingo Alcaraz-Segura
Earth Syst. Sci. Data, 15, 1871–1887, https://doi.org/10.5194/essd-15-1871-2023, https://doi.org/10.5194/essd-15-1871-2023, 2023
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This dataset provides scientists, environmental managers, and the public in general with valuable information on the first characterization of ecosystem functional diversity based on primary production developed in the Sierra Nevada (Spain), a biodiversity hotspot in the Mediterranean basin and an exceptional natural laboratory for ecological research within the Long-Term Social-Ecological Research (LTSER) network.
Shengli Tao, Zurui Ao, Jean-Pierre Wigneron, Sassan Saatchi, Philippe Ciais, Jérôme Chave, Thuy Le Toan, Pierre-Louis Frison, Xiaomei Hu, Chi Chen, Lei Fan, Mengjia Wang, Jiangling Zhu, Xia Zhao, Xiaojun Li, Xiangzhuo Liu, Yanjun Su, Tianyu Hu, Qinghua Guo, Zhiheng Wang, Zhiyao Tang, Yi Y. Liu, and Jingyun Fang
Earth Syst. Sci. Data, 15, 1577–1596, https://doi.org/10.5194/essd-15-1577-2023, https://doi.org/10.5194/essd-15-1577-2023, 2023
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We provide the first long-term (since 1992), high-resolution (8.9 km) satellite radar backscatter data set (LHScat) with a C-band (5.3 GHz) signal dynamic for global lands. LHScat was created by fusing signals from ERS (1992–2001; C-band), QSCAT (1999–2009; Ku-band), and ASCAT (since 2007; C-band). LHScat has been validated against independent ERS-2 signals. It could be used in a variety of studies, such as vegetation monitoring and hydrological modelling.
Jose V. Moris, Pedro Álvarez-Álvarez, Marco Conedera, Annalie Dorph, Thomas D. Hessilt, Hugh G. P. Hunt, Renata Libonati, Lucas S. Menezes, Mortimer M. Müller, Francisco J. Pérez-Invernón, Gianni B. Pezzatti, Nicolau Pineda, Rebecca C. Scholten, Sander Veraverbeke, B. Mike Wotton, and Davide Ascoli
Earth Syst. Sci. Data, 15, 1151–1163, https://doi.org/10.5194/essd-15-1151-2023, https://doi.org/10.5194/essd-15-1151-2023, 2023
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This work describes a database on holdover times of lightning-ignited wildfires (LIWs). Holdover time is defined as the time between lightning-induced fire ignition and fire detection. The database contains 42 datasets built with data on more than 152 375 LIWs from 13 countries in five continents from 1921 to 2020. This database is the first freely-available, harmonized and ready-to-use global source of holdover time data, which may be used to investigate LIWs and model the holdover phenomenon.
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Short summary
Calcifying marine algae (coccolithophores) are key to oceanic biogeochemical processes, such as calcium carbonate production and export. We compile a global database of calcium carbonate production from field samples (n = 2756), alongside primary production rates and coccolithophore abundance. Basic statistical analysis highlights global distribution, average surface and integrated rates, patterns with depth and the importance of considering cell-normalised rates as a simple physiological index.
Calcifying marine algae (coccolithophores) are key to oceanic biogeochemical processes, such as...
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