Articles | Volume 14, issue 3
https://doi.org/10.5194/essd-14-1015-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/essd-14-1015-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Data description paper
| 
08 Mar 2022
Data description paper |
| 08 Mar 2022
| 08 Mar 2022
Patos Lagoon estuary and adjacent marine coastal biodiversity long-term data
Valéria M. Lemos
CORRESPONDING AUTHOR
Instituto de Oceanografia, Universidade Federal do Rio Grande (FURG), Rio Grande, C.P. 474, CEP 96203-900, Brazil
Marianna Lanari
Instituto de Oceanografia, Universidade Federal do Rio Grande (FURG), Rio Grande, C.P. 474, CEP 96203-900, Brazil
Margareth Copertino
Instituto de Oceanografia, Universidade Federal do Rio Grande (FURG), Rio Grande, C.P. 474, CEP 96203-900, Brazil
Eduardo R. Secchi
Instituto de Oceanografia, Universidade Federal do Rio Grande (FURG), Rio Grande, C.P. 474, CEP 96203-900, Brazil
Paulo Cesar O. V. de Abreu
Instituto de Oceanografia, Universidade Federal do Rio Grande (FURG), Rio Grande, C.P. 474, CEP 96203-900, Brazil
José H. Muelbert
Instituto de Oceanografia, Universidade Federal do Rio Grande (FURG), Rio Grande, C.P. 474, CEP 96203-900, Brazil
Alexandre M. Garcia
Instituto de Oceanografia, Universidade Federal do Rio Grande (FURG), Rio Grande, C.P. 474, CEP 96203-900, Brazil
Felipe C. Dumont
Instituto de Oceanografia, Universidade Federal do Rio Grande (FURG), Rio Grande, C.P. 474, CEP 96203-900, Brazil
Erik Muxagata
Instituto de Oceanografia, Universidade Federal do Rio Grande (FURG), Rio Grande, C.P. 474, CEP 96203-900, Brazil
João P. Vieira
Instituto de Oceanografia, Universidade Federal do Rio Grande (FURG), Rio Grande, C.P. 474, CEP 96203-900, Brazil
André Colling
Instituto de Oceanografia, Universidade Federal do Rio Grande (FURG), Rio Grande, C.P. 474, CEP 96203-900, Brazil
Clarisse Odebrecht
Instituto de Oceanografia, Universidade Federal do Rio Grande (FURG), Rio Grande, C.P. 474, CEP 96203-900, Brazil
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Gabriel Nuto Nóbrega, Xosé L. Otero, Danilo Jefferson Romero, Hermano Melo Queiroz, Daniel Gorman, Margareth da Silva Copertino, Marisa de Cássia Piccolo, and Tiago Osório Ferreira
SOIL, 9, 189–208, https://doi.org/10.5194/soil-9-189-2023, https://doi.org/10.5194/soil-9-189-2023, 2023
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The present study addresses the soil information gap in tropical seagrass meadows. The different geological and bioclimatic settings caused a relevant soil diversity. Contrasting geochemical conditions promote different intensities of soil processes. Seagrass soils from the northeastern semiarid coast are marked by a more intense sulfidization. Understanding soil processes may help in the sustainable management of seagrasses.
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The Western Channel Observatory: a century of physical, chemical and biological data compiled from pelagic and benthic habitats in the western English Channel
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Yan Yang, Patrick Brockmann, Carolina Galdino, Uwe Schindler, and Frédéric Gazeau
Earth Syst. Sci. Data, 16, 3771–3780, https://doi.org/10.5194/essd-16-3771-2024, https://doi.org/10.5194/essd-16-3771-2024, 2024
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Studies investigating the effects of ocean acidification on marine organisms and communities have been steadily increasing. To facilitate data comparison, a data compilation hosted by the PANGAEA Data Publisher was initiated in 2008 and is updated on a regular basis. By November 2023, a total of 1501 datasets (~25 million data points) from 1554 papers have been archived. To filter and access relevant biological response data from this compilation, a user-friendly portal was launched in 2018.
Mathilde Dugenne, Marco Corrales-Ugalde, Jessica Y. Luo, Rainer Kiko, Todd D. O'Brien, Jean-Olivier Irisson, Fabien Lombard, Lars Stemmann, Charles Stock, Clarissa R. Anderson, Marcel Babin, Nagib Bhairy, Sophie Bonnet, Francois Carlotti, Astrid Cornils, E. Taylor Crockford, Patrick Daniel, Corinne Desnos, Laetitia Drago, Amanda Elineau, Alexis Fischer, Nina Grandrémy, Pierre-Luc Grondin, Lionel Guidi, Cecile Guieu, Helena Hauss, Kendra Hayashi, Jenny A. Huggett, Laetitia Jalabert, Lee Karp-Boss, Kasia M. Kenitz, Raphael M. Kudela, Magali Lescot, Claudie Marec, Andrew McDonnell, Zoe Mériguet, Barbara Niehoff, Margaux Noyon, Thelma Panaïotis, Emily Peacock, Marc Picheral, Emilie Riquier, Collin Roesler, Jean-Baptiste Romagnan, Heidi M. Sosik, Gretchen Spencer, Jan Taucher, Chloé Tilliette, and Marion Vilain
Earth Syst. Sci. Data, 16, 2971–2999, https://doi.org/10.5194/essd-16-2971-2024, https://doi.org/10.5194/essd-16-2971-2024, 2024
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Plankton and particles influence carbon cycling and energy flow in marine ecosystems. We used three types of novel plankton imaging systems to obtain size measurements from a range of plankton and particle sizes and across all major oceans. Data were compiled and cross-calibrated from many thousands of images, showing seasonal and spatial changes in particle size structure in different ocean basins. These datasets form the first release of the Pelagic Size Structure database (PSSdb).
Nina Grandremy, Paul Bourriau, Edwin Daché, Marie-Madeleine Danielou, Mathieu Doray, Christine Dupuy, Bertrand Forest, Laetitia Jalabert, Martin Huret, Sophie Le Mestre, Antoine Nowaczyk, Pierre Petitgas, Philippe Pineau, Justin Rouxel, Morgan Tardivel, and Jean-Baptiste Romagnan
Earth Syst. Sci. Data, 16, 1265–1282, https://doi.org/10.5194/essd-16-1265-2024, https://doi.org/10.5194/essd-16-1265-2024, 2024
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We present two space- and time-resolved zooplankton datasets originating from samples collected in the Bay of Biscay in spring over the 2004–2019 period and imaged with the interoperable imaging systems ZooScan and ZooCAM. These datasets are suited for long-term size-based or combined size- and taxonomy-based ecological studies of zooplankton. The set of sorted images are provided along with a set of morphological descriptors that are useful when machine learning is applied to plankton studies.
Dieter Piepenburg, Thomas Brey, Katharina Teschke, Jennifer Dannheim, Paul Kloss, Marianne Rehage, Miriam L. S. Hansen, and Casper Kraan
Earth Syst. Sci. Data, 16, 1177–1184, https://doi.org/10.5194/essd-16-1177-2024, https://doi.org/10.5194/essd-16-1177-2024, 2024
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Research on ecological footprints of climate change and human impacts in Arctic seas is still hampered by problems in accessing sound data, which is unevenly distributed among regions and faunal groups. To address this issue, we present the PAN-Arctic data collection of benthic BIOtas (PANABIO). It provides open access to valuable biodiversity information by integrating data from various sources and of various formats and offers versatile exploration tools for data filtering and mapping.
Marine Di Stefano, David Nerini, Itziar Alvarez, Giandomenico Ardizzone, Patrick Astruch, Gotzon Basterretxea, Aurélie Blanfuné, Denis Bonhomme, Antonio Calò, Ignacio Catalan, Carlo Cattano, Adrien Cheminée, Romain Crec'hriou, Amalia Cuadros, Antonio Di Franco, Carlos Diaz-Gil, Tristan Estaque, Robin Faillettaz, Fabiana C. Félix-Hackradt, José Antonio Garcia-Charton, Paolo Guidetti, Loïc Guilloux, Jean-Georges Harmelin, Mireille Harmelin-Vivien, Manuel Hidalgo, Hilmar Hinz, Jean-Olivier Irisson, Gabriele La Mesa, Laurence Le Diréach, Philippe Lenfant, Enrique Macpherson, Sanja Matić-Skoko, Manon Mercader, Marco Milazzo, Tiffany Monfort, Joan Moranta, Manuel Muntoni, Matteo Murenu, Lucie Nunez, M. Pilar Olivar, Jérémy Pastor, Ángel Pérez-Ruzafa, Serge Planes, Nuria Raventos, Justine Richaume, Elodie Rouanet, Erwan Roussel, Sandrine Ruitton, Ana Sabatès, Thierry Thibaut, Daniele Ventura, Laurent Vigliola, Dario Vrdoljak, and Vincent Rossi
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-22, https://doi.org/10.5194/essd-2024-22, 2024
Revised manuscript accepted for ESSD
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We build a compilation of early life dispersal traits for coastal fish species. The database contains 110 000 entries collected from 1993 to 2021 in Western Mediterranean Basin. All observations are harmonized to inform on dates and locations of spawning and settlement, along with pelagic larval durations. When applicable, missing dates are reconstructed from Dynamic Energy Budget theory. Statistical analyses reveal sampling biases across taxa, space and time.
Andrea J. McEvoy, Angus Atkinson, Ruth L. Airs, Rachel Brittain, Ian Brown, Elaine S. Fileman, Helen S. Findlay, Caroline L. McNeill, Clare Ostle, Tim J. Smyth, Paul J. Somerfield, Karen Tait, Glen A. Tarran, Simon Thomas, Claire E. Widdicombe, E. Malcolm S. Woodward, Amanda Beesley, David V. P. Conway, James Fishwick, Hannah Haines, Carolyn Harris, Roger Harris, Pierre Hélaouët, David Johns, Penelope K. Lindeque, Thomas Mesher, Abigail McQuatters-Gollop, Joana Nunes, Frances Perry, Ana M. Queiros, Andrew Rees, Saskia Rühl, David Sims, Ricardo Torres, and Stephen Widdicombe
Earth Syst. Sci. Data, 15, 5701–5737, https://doi.org/10.5194/essd-15-5701-2023, https://doi.org/10.5194/essd-15-5701-2023, 2023
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Western Channel Observatory is an oceanographic time series and biodiversity reference site within 40 km of Plymouth (UK), sampled since 1903. Differing levels of reporting and formatting hamper the use of the valuable individual datasets. We provide the first summary database as monthly averages where comparisons can be made of the physical, chemical and biological data. We describe the database, illustrate its utility to examine seasonality and longer-term trends, and summarize previous work.
Zhongkun Hong, Di Long, Xingdong Li, Yiming Wang, Jianmin Zhang, Mohamed A. Hamouda, and Mohamed M. Mohamed
Earth Syst. Sci. Data, 15, 5281–5300, https://doi.org/10.5194/essd-15-5281-2023, https://doi.org/10.5194/essd-15-5281-2023, 2023
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Changes in ocean chlorophyll-a (Chl-a) concentration are related to ecosystem balance. Here, we present high-quality gap-filled Chl-a data in open oceans, reflecting the distribution and changes in global Chl-a concentration. Our findings highlight the efficacy of reconstructing missing satellite observations using convolutional neural networks. This dataset and model are valuable for research in ocean color remote sensing, offering data support and methodological references for related studies.
Thomas J. Ryan-Keogh, Sandy J. Thomalla, Nicolette Chang, and Tumelo Moalusi
Earth Syst. Sci. Data, 15, 4829–4848, https://doi.org/10.5194/essd-15-4829-2023, https://doi.org/10.5194/essd-15-4829-2023, 2023
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Oceanic productivity has been highlighted as an important environmental indicator of climate change in comparison to other existing metrics. However, the availability of these data to assess trends and trajectories is plagued with issues, such as application to only a single satellite reducing the time period for assessment. We have applied multiple algorithms to the longest ocean colour record to provide a record for assessing climate-change-driven trends.
Raed Halawi Ghosn, Émilie Poisson-Caillault, Guillaume Charria, Armel Bonnat, Michel Repecaud, Jean-Valery Facq, Loïc Quéméner, Vincent Duquesne, Camille Blondel, and Alain Lefebvre
Earth Syst. Sci. Data, 15, 4205–4218, https://doi.org/10.5194/essd-15-4205-2023, https://doi.org/10.5194/essd-15-4205-2023, 2023
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This article describes a long-term (2004–2022) dataset from an in situ instrumented station located in the eastern English Channel and belonging to the COAST-HF network (ILICO). It provides high temporal resolution (sub-hourly) oceanographic and meteorological measurements. The MAREL Carnot dataset can be used to conduct research in marine ecology, oceanography, and data science. It was utilized to characterize recurrent, rare, and extreme events in the coastal area.
Shungudzemwoyo P. Garaba, Michelle Albinus, Guido Bonthond, Sabine Flöder, Mario L. M. Miranda, Sven Rohde, Joanne Y. L. Yong, and Jochen Wollschläger
Earth Syst. Sci. Data, 15, 4163–4179, https://doi.org/10.5194/essd-15-4163-2023, https://doi.org/10.5194/essd-15-4163-2023, 2023
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These high-quality data document a harmful algal bloom dominated by Nodularia spumigena, a cyanobacterium that has been recurring in waters around the world, using advanced water observation technologies. We also showcase the benefits of experiments of opportunity and the issues with obtaining synoptic spatio-temporal data for monitoring water quality. The dataset can be leveraged to gain more knowledge on related blooms, develop detection algorithms and optimize future monitoring efforts.
Fabrice Stephenson, Tom Brough, Drew Lohrer, Daniel Leduc, Shane Geange, Owen Anderson, David Bowden, Malcolm R. Clark, Niki Davey, Enrique Pardo, Dennis P. Gordon, Brittany Finucci, Michelle Kelly, Diana Macpherson, Lisa McCartain, Sadie Mills, Kate Neill, Wendy Nelson, Rachael Peart, Matthew H. Pinkerton, Geoffrey B. Read, Jodie Robertson, Ashley Rowden, Kareen Schnabel, Andrew Stewart, Carl Struthers, Leigh Tait, Di Tracey, Shaun Weston, and Carolyn Lundquist
Earth Syst. Sci. Data, 15, 3931–3939, https://doi.org/10.5194/essd-15-3931-2023, https://doi.org/10.5194/essd-15-3931-2023, 2023
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Understanding the distribution of species that live at the seafloor is critical to the management of the marine environment but is lacking in many areas. Here, we showcase an atlas of seafloor biodiversity that describes the distribution of approximately 600 organisms throughout New Zealand’s vast marine realm. Each layer in the open-access atlas has been evaluated by leading experts and provides a key resource for the sustainable use of New Zealand's marine environment.
Hubert Loisel, Daniel Schaffer Ferreira Jorge, Rick A. Reynolds, and Dariusz Stramski
Earth Syst. Sci. Data, 15, 3711–3731, https://doi.org/10.5194/essd-15-3711-2023, https://doi.org/10.5194/essd-15-3711-2023, 2023
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Studies of light fields in aquatic environments require data from radiative transfer simulations that are free of measurement errors. In contrast to previously published synthetic optical databases, the present database was created by simulations covering a broad range of seawater optical properties that exhibit probability distributions consistent with a global ocean dominated by open-ocean pelagic environments. This database is intended to support ocean color science and applications.
Philippe Massicotte, Marcel Babin, Frank Fell, Vincent Fournier-Sicre, and David Doxaran
Earth Syst. Sci. Data, 15, 3529–3545, https://doi.org/10.5194/essd-15-3529-2023, https://doi.org/10.5194/essd-15-3529-2023, 2023
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The COASTlOOC oceanographic expeditions in 1997 and 1998 studied the relationship between seawater properties and biology and chemistry across the European coasts. The team collected data from 379 stations using ships and helicopters to support the development of ocean color remote-sensing algorithms. This unique and consistent dataset is still used today by researchers.
Valentin Siebert, Brivaëla Moriceau, Lukas Fröhlich, Bernd R. Schöne, Erwan Amice, Beatriz Beker, Kevin Bihannic, Isabelle Bihannic, Gaspard Delebecq, Jérémy Devesa, Morgane Gallinari, Yoan Germain, Émilie Grossteffan, Klaus Peter Jochum, Thierry Le Bec, Manon Le Goff, Céline Liorzou, Aude Leynaert, Claudie Marec, Marc Picheral, Peggy Rimmelin-Maury, Marie-Laure Rouget, Matthieu Waeles, and Julien Thébault
Earth Syst. Sci. Data, 15, 3263–3281, https://doi.org/10.5194/essd-15-3263-2023, https://doi.org/10.5194/essd-15-3263-2023, 2023
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This article presents an overview of the results of biological, chemical and physical parameters measured at high temporal resolution (sampling once and twice per week) during environmental monitoring that took place in 2021 in the Bay of Brest. We strongly believe that this dataset could be very useful for other scientists performing sclerochronological investigations, studying biogeochemical cycles or conducting various ecological research projects.
Sofie Vranken, Marine Robuchon, Stefanie Dekeyzer, Ignacio Bárbara, Inka Bartsch, Aurélie Blanfuné, Charles-François Boudouresque, Wim Decock, Christophe Destombe, Bruno de Reviers, Pilar Díaz-Tapia, Anne Herbst, Romain Julliard, Rolf Karez, Priit Kersen, Stacy A. Krueger-Hadfield, Ralph Kuhlenkamp, Akira F. Peters, Viviana Peña, Cristina Piñeiro-Corbeira, Fabio Rindi, Florence Rousseau, Jan Rueness, Hendrik Schubert, Kjersti Sjøtun, Marta Sansón, Dan Smale, Thierry Thibaut, Myriam Valero, Leen Vandepitte, Bart Vanhoorne, Alba Vergés, Marc Verlaque, Christophe Vieira, Line Le Gall, Frederik Leliaert, and Olivier De Clerck
Earth Syst. Sci. Data, 15, 2711–2754, https://doi.org/10.5194/essd-15-2711-2023, https://doi.org/10.5194/essd-15-2711-2023, 2023
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We present AlgaeTraits, a high-quality seaweed trait database. The data are structured within the framework of WoRMS and are supported by an expert editor community. With 45 175 trait records for 21 prioritised biological and ecological traits, and a taxonomic coverage of 1 745 European species, AlgaeTraits significantly advances previous efforts to provide standardised seaweed trait data. AlgaeTraits will serve as a foundation for future research on diversity and evolution of seaweeds.
Alain Lefebvre and David Devreker
Earth Syst. Sci. Data, 15, 1077–1092, https://doi.org/10.5194/essd-15-1077-2023, https://doi.org/10.5194/essd-15-1077-2023, 2023
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The Suivi Regional des Nutriments (SRN) data set includes long-term time series on marine phytoplankton and physicochemical measures in the eastern English Channel and the Southern Bight of the North Sea. These data sets should be useful for comparing contrasted coastal marine ecosystems to further knowledge about the direct and indirect effects of human pressures and environmental changes on ecosystem structure and function, including eutrophication and harmful algal bloom issues.
Jacopo Pulcinella, Enrico Nicola Armelloni, Carmen Ferrà, Giuseppe Scarcella, and Anna Nora Tassetti
Earth Syst. Sci. Data, 15, 809–820, https://doi.org/10.5194/essd-15-809-2023, https://doi.org/10.5194/essd-15-809-2023, 2023
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Deep-sea fishery in the Mediterranean Sea was historically driven by the commercial profitability of deepwater red shrimps. Understanding spatiotemporal dynamics of fishing is key to comprehensively evaluate the status of these resources and prevent stock collapse. The observed monthly fishing effort and frequency dataset released by the automatic identification system (AIS) may help researchers as well as those involved in fishery management and in the update of existing management plans.
Simone Strydom, Roisin McCallum, Anna Lafratta, Chanelle L. Webster, Caitlyn M. O'Dea, Nicole E. Said, Natasha Dunham, Karina Inostroza, Cristian Salinas, Samuel Billinghurst, Charlie M. Phelps, Connor Campbell, Connor Gorham, Rachele Bernasconi, Anna M. Frouws, Axel Werner, Federico Vitelli, Viena Puigcorbé, Alexandra D'Cruz, Kathryn M. McMahon, Jack Robinson, Megan J. Huggett, Sian McNamara, Glenn A. Hyndes, and Oscar Serrano
Earth Syst. Sci. Data, 15, 511–519, https://doi.org/10.5194/essd-15-511-2023, https://doi.org/10.5194/essd-15-511-2023, 2023
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Seagrasses are important underwater plants that provide valuable ecosystem services to humans, including mitigating climate change. Understanding the natural history of seagrass meadows across different types of environments is crucial to conserving seagrasses in the global ocean. This dataset contains data extracted from peer-reviewed publications and highlights which seagrasses have been studied and in which locations and is useful for pointing out which need further investigation.
Flavienne Bruyant, Rémi Amiraux, Marie-Pier Amyot, Philippe Archambault, Lise Artigue, Lucas Barbedo de Freitas, Guislain Bécu, Simon Bélanger, Pascaline Bourgain, Annick Bricaud, Etienne Brouard, Camille Brunet, Tonya Burgers, Danielle Caleb, Katrine Chalut, Hervé Claustre, Véronique Cornet-Barthaux, Pierre Coupel, Marine Cusa, Fanny Cusset, Laeticia Dadaglio, Marty Davelaar, Gabrièle Deslongchamps, Céline Dimier, Julie Dinasquet, Dany Dumont, Brent Else, Igor Eulaers, Joannie Ferland, Gabrielle Filteau, Marie-Hélène Forget, Jérome Fort, Louis Fortier, Martí Galí, Morgane Gallinari, Svend-Erik Garbus, Nicole Garcia, Catherine Gérikas Ribeiro, Colline Gombault, Priscilla Gourvil, Clémence Goyens, Cindy Grant, Pierre-Luc Grondin, Pascal Guillot, Sandrine Hillion, Rachel Hussherr, Fabien Joux, Hannah Joy-Warren, Gabriel Joyal, David Kieber, Augustin Lafond, José Lagunas, Patrick Lajeunesse, Catherine Lalande, Jade Larivière, Florence Le Gall, Karine Leblanc, Mathieu Leblanc, Justine Legras, Keith Lévesque, Kate-M. Lewis, Edouard Leymarie, Aude Leynaert, Thomas Linkowski, Martine Lizotte, Adriana Lopes dos Santos, Claudie Marec, Dominique Marie, Guillaume Massé, Philippe Massicotte, Atsushi Matsuoka, Lisa A. Miller, Sharif Mirshak, Nathalie Morata, Brivaela Moriceau, Philippe-Israël Morin, Simon Morisset, Anders Mosbech, Alfonso Mucci, Gabrielle Nadaï, Christian Nozais, Ingrid Obernosterer, Thimoté Paire, Christos Panagiotopoulos, Marie Parenteau, Noémie Pelletier, Marc Picheral, Bernard Quéguiner, Patrick Raimbault, Joséphine Ras, Eric Rehm, Llúcia Ribot Lacosta, Jean-François Rontani, Blanche Saint-Béat, Julie Sansoulet, Noé Sardet, Catherine Schmechtig, Antoine Sciandra, Richard Sempéré, Caroline Sévigny, Jordan Toullec, Margot Tragin, Jean-Éric Tremblay, Annie-Pier Trottier, Daniel Vaulot, Anda Vladoiu, Lei Xue, Gustavo Yunda-Guarin, and Marcel Babin
Earth Syst. Sci. Data, 14, 4607–4642, https://doi.org/10.5194/essd-14-4607-2022, https://doi.org/10.5194/essd-14-4607-2022, 2022
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This paper presents a dataset acquired during a research cruise held in Baffin Bay in 2016. We observed that the disappearance of sea ice in the Arctic Ocean increases both the length and spatial extent of the phytoplankton growth season. In the future, this will impact the food webs on which the local populations depend for their food supply and fisheries. This dataset will provide insight into quantifying these impacts and help the decision-making process for policymakers.
Rainer Kiko, Marc Picheral, David Antoine, Marcel Babin, Léo Berline, Tristan Biard, Emmanuel Boss, Peter Brandt, Francois Carlotti, Svenja Christiansen, Laurent Coppola, Leandro de la Cruz, Emilie Diamond-Riquier, Xavier Durrieu de Madron, Amanda Elineau, Gabriel Gorsky, Lionel Guidi, Helena Hauss, Jean-Olivier Irisson, Lee Karp-Boss, Johannes Karstensen, Dong-gyun Kim, Rachel M. Lekanoff, Fabien Lombard, Rubens M. Lopes, Claudie Marec, Andrew M. P. McDonnell, Daniela Niemeyer, Margaux Noyon, Stephanie H. O'Daly, Mark D. Ohman, Jessica L. Pretty, Andreas Rogge, Sarah Searson, Masashi Shibata, Yuji Tanaka, Toste Tanhua, Jan Taucher, Emilia Trudnowska, Jessica S. Turner, Anya Waite, and Lars Stemmann
Earth Syst. Sci. Data, 14, 4315–4337, https://doi.org/10.5194/essd-14-4315-2022, https://doi.org/10.5194/essd-14-4315-2022, 2022
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The term
marine particlescomprises detrital aggregates; fecal pellets; bacterioplankton, phytoplankton and zooplankton; and even fish. Here, we present a global dataset that contains 8805 vertical particle size distribution profiles obtained with Underwater Vision Profiler 5 (UVP5) camera systems. These data are valuable to the scientific community, as they can be used to constrain important biogeochemical processes in the ocean, such as the flux of carbon to the deep sea.
Benjamin R. Loveday, Timothy Smyth, Anıl Akpinar, Tom Hull, Mark E. Inall, Jan Kaiser, Bastien Y. Queste, Matt Tobermann, Charlotte A. J. Williams, and Matthew R. Palmer
Earth Syst. Sci. Data, 14, 3997–4016, https://doi.org/10.5194/essd-14-3997-2022, https://doi.org/10.5194/essd-14-3997-2022, 2022
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Using a new approach to combine autonomous underwater glider data and satellite Earth observations, we have generated a 19-month time series of North Sea net primary productivity – the rate at which phytoplankton absorbs carbon dioxide minus that lost through respiration. This time series, which spans 13 gliders, allows for new investigations into small-scale, high-frequency variability in the biogeochemical processes that underpin the carbon cycle and coastal marine ecosystems in shelf seas.
Autun Purser, Laura Hehemann, Lilian Boehringer, Ellen Werner, Santiago E. A. Pineda-Metz, Lucie Vignes, Axel Nordhausen, Moritz Holtappels, and Frank Wenzhoefer
Earth Syst. Sci. Data, 14, 3635–3648, https://doi.org/10.5194/essd-14-3635-2022, https://doi.org/10.5194/essd-14-3635-2022, 2022
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Within this paper we present the seafloor images, maps and acoustic camera data collected by a towed underwater research platform deployed in 20 locations across the eastern Weddell Sea, Antarctica, during the PS124 COSMUS expedition with the research icebreaker RV Polarstern in 2021. The 20 deployments highlight the great variability in seafloor structure and faunal communities present. Of key interest was the discovery of the largest fish nesting colony discovered globally to date.
Walker O. Smith Jr.
Earth Syst. Sci. Data, 14, 2737–2747, https://doi.org/10.5194/essd-14-2737-2022, https://doi.org/10.5194/essd-14-2737-2022, 2022
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The rate of photosynthesis of marine phytoplankton – primary productivity – is typically measured by quantifying the rate of radioisotope incorporation. However, generally such measurements are not collected by one individual through time and so are difficult to compare due to methodological differences. A data set compiled by one investigator over more than 20 years in the Ross Sea demonstrates the importance of the region as a "hot spot" for growth and synthesis.
Mayya Gogina, Anja Zettler, and Michael L. Zettler
Earth Syst. Sci. Data, 14, 1–4, https://doi.org/10.5194/essd-14-1-2022, https://doi.org/10.5194/essd-14-1-2022, 2022
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For the first time we publish a taxonomically detailed and robust dataset of biomass conversion factors for macro-zoobenthos, often required in many studies. Georeferenced raw data for 497 taxa empower the user to make the best selections for combining them with their own data, and aggregation can help to quantify natural variability and uncertainty and refine current ecological theory. Standardised measurements were done on material collected for over 2 decades in the Baltic and the North seas.
Clare Ostle, Kevin Paxman, Carolyn A. Graves, Mathew Arnold, Luis Felipe Artigas, Angus Atkinson, Anaïs Aubert, Malcolm Baptie, Beth Bear, Jacob Bedford, Michael Best, Eileen Bresnan, Rachel Brittain, Derek Broughton, Alexandre Budria, Kathryn Cook, Michelle Devlin, George Graham, Nick Halliday, Pierre Hélaouët, Marie Johansen, David G. Johns, Dan Lear, Margarita Machairopoulou, April McKinney, Adam Mellor, Alex Milligan, Sophie Pitois, Isabelle Rombouts, Cordula Scherer, Paul Tett, Claire Widdicombe, and Abigail McQuatters-Gollop
Earth Syst. Sci. Data, 13, 5617–5642, https://doi.org/10.5194/essd-13-5617-2021, https://doi.org/10.5194/essd-13-5617-2021, 2021
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Plankton form the base of the marine food web and are sensitive indicators of environmental change. The Plankton Lifeform Extraction Tool brings together disparate plankton datasets into a central database from which it extracts abundance time series of plankton functional groups, called
lifeforms, according to shared biological traits. This tool has been designed to make complex plankton datasets accessible and meaningful for policy, public interest, and scientific discovery.
Francesco Mattei and Michele Scardi
Earth Syst. Sci. Data, 13, 4967–4985, https://doi.org/10.5194/essd-13-4967-2021, https://doi.org/10.5194/essd-13-4967-2021, 2021
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Data paucity hinders the understanding of natural processes such as phytoplankton production. Several studies stressed how the lack of data is the main constraint for modeling phytoplankton production. We created a global and ready-to-use dataset regarding phytoplankton production, collecting and processing data from several sources. We performed a general data analysis from a numerical and an ecological perspective. This dataset will help enhance the understanding of phytoplankton production.
Annalisa Minelli, Carmen Ferrà, Alessandra Spagnolo, Martina Scanu, Anna Nora Tassetti, Carla Rita Ferrari, Cristina Mazziotti, Silvia Pigozzi, Zrinka Jakl, Tena Šarčević, Miranda Šimac, Claudia Kruschel, Dubravko Pejdo, Enrico Barbone, Michele De Gioia, Diego Borme, Emiliano Gordini, Rocco Auriemma, Ivo Benzon, Đeni Vuković-Stanišić, Sandi Orlić, Vlado Frančić, Damir Zec, Ivana Orlić Kapović, Michela Soldati, Silvia Ulazzi, and Gianna Fabi
Earth Syst. Sci. Data, 13, 1905–1923, https://doi.org/10.5194/essd-13-1905-2021, https://doi.org/10.5194/essd-13-1905-2021, 2021
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This data paper describes a dataset of natural and artificial reefs and wrecks in the Adriatic Sea collected, from a survey, in the frame of the ADRIREEF Interreg project. Information about the identification of the reef and its physical characteristics, surrounding area, and management actions/facilities has been collected in order to create a very detailed dataset, which has been harmonized and published in the SEANOE repository (https://doi.org/10.17882/74880).
Bryony L. Townhill, Rebecca E. Holt, Bjarte Bogstad, Joël M. Durant, John K. Pinnegar, Andrey V. Dolgov, Natalia A. Yaragina, Edda Johannesen, and Geir Ottersen
Earth Syst. Sci. Data, 13, 1361–1370, https://doi.org/10.5194/essd-13-1361-2021, https://doi.org/10.5194/essd-13-1361-2021, 2021
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A dataset on the diet of Atlantic cod in the Barents Sea from the 1930s to 2018 has been compiled to produce one of the largest fish diet datasets available globally. A top predator, cod plays a key role in the food web. The data from Norway, the United Kingdom and Russia include data from 2.5 million fish. Diets have changed considerably from the start of the dataset in the 1930s. This dataset helps us understand how the environment and ecosystems are responding to a changing climate.
Le Xie, Wei Wei, Lanlan Cai, Xiaowei Chen, Yuhong Huang, Nianzhi Jiao, Rui Zhang, and Ya-Wei Luo
Earth Syst. Sci. Data, 13, 1251–1271, https://doi.org/10.5194/essd-13-1251-2021, https://doi.org/10.5194/essd-13-1251-2021, 2021
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Viruses play key roles in marine ecosystems by killing their hosts, maintaining diversity and recycling nutrients. In the global viral oceanography database (gVOD), 10 931 viral abundance data and 727 viral production data, along with host and other oceanographic parameters, were compiled. It identified viral data were undersampled in the southeast Pacific and Indian oceans. The gVOD can be used in marine viral ecology investigation and modeling of marine ecosystems and biogeochemical cycles.
Damiano Righetti, Meike Vogt, Niklaus E. Zimmermann, Michael D. Guiry, and Nicolas Gruber
Earth Syst. Sci. Data, 12, 907–933, https://doi.org/10.5194/essd-12-907-2020, https://doi.org/10.5194/essd-12-907-2020, 2020
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Phytoplankton sustain marine life, as they are the principal primary producers in the global ocean. Despite their ecological importance, their distribution and diversity patterns are poorly known, mostly due to data limitations. We present a global dataset that synthesizes over 1.3 million occurrences of phytoplankton from public archives. It is easily extendable. This dataset can be used to characterize phytoplankton distribution and diversity in current and future oceans.
Francesco Acri, Mauro Bastianini, Fabrizio Bernardi Aubry, Elisa Camatti, Alfredo Boldrin, Caterina Bergami, Daniele Cassin, Amelia De Lazzari, Stefania Finotto, Annalisa Minelli, Alessandro Oggioni, Marco Pansera, Alessandro Sarretta, Giorgio Socal, and Alessandra Pugnetti
Earth Syst. Sci. Data, 12, 215–230, https://doi.org/10.5194/essd-12-215-2020, https://doi.org/10.5194/essd-12-215-2020, 2020
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The present paper describes a database containing observations for 21 parameters of abiotic, phytoplankton, and zooplankton data collected in the northern Adriatic Sea region (Italy) from 1965 to 2015. Due to the long temporal coverage, the majority of parameters changed collection and analysis method over time. These variations are reported in the database and detailed in the paper.
Irawan Asaad, Carolyn J. Lundquist, Mark V. Erdmann, and Mark J. Costello
Earth Syst. Sci. Data, 11, 163–174, https://doi.org/10.5194/essd-11-163-2019, https://doi.org/10.5194/essd-11-163-2019, 2019
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This atlas is a compendium of geospatial online and open-access data describing biodiversity conservation in the Coral Triangle of the Indo-Pacific biogeographic realm. It consists of three sets of interlinked digital maps: (1) biodiversity features; (2) areas of importance for biodiversity conservation; and (3) recommended priorities for Marine Protected Area (MPA) Network Expansion. These maps provide the most comprehensive biodiversity datasets available to date for the region.
Dmitry Kondrik, Eduard Kazakov, and Dmitry Pozdnyakov
Earth Syst. Sci. Data, 11, 119–128, https://doi.org/10.5194/essd-11-119-2019, https://doi.org/10.5194/essd-11-119-2019, 2019
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This paper presents a description of the original database of blooms of the calcifying phytoplankton in sub-Arctic and Arctic seas, their spatio-temporal features and associated environmental influences. This type of phytoplankton is efficient in decreasing the ability of the ocean to intake external carbon dioxide and hence amplifies the greenhouse effect. The published database can be used by a large community of users involved in studies of both aquatic ecology and carbon cycles.
Benjamin Roger Loveday and Timothy Smyth
Earth Syst. Sci. Data, 10, 2043–2054, https://doi.org/10.5194/essd-10-2043-2018, https://doi.org/10.5194/essd-10-2043-2018, 2018
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A 40-year data set of ocean reflectance is derived from an atmospherically corrected climate quality record of top-of-atmosphere signals taken from the satellite-based AVHRR sensor. The data set provides a unique view of visible changes in the global ocean over timescales where climatic effects are demonstrable and spans coverage gaps left by more traditional satellite ocean colour sensors. It is particularly relevant to monitoring bright plankton blooms, such as coccolithophores.
Heather A. Bouman, Trevor Platt, Martina Doblin, Francisco G. Figueiras, Kristinn Gudmundsson, Hafsteinn G. Gudfinnsson, Bangqin Huang, Anna Hickman, Michael Hiscock, Thomas Jackson, Vivian A. Lutz, Frédéric Mélin, Francisco Rey, Pierre Pepin, Valeria Segura, Gavin H. Tilstone, Virginie van Dongen-Vogels, and Shubha Sathyendranath
Earth Syst. Sci. Data, 10, 251–266, https://doi.org/10.5194/essd-10-251-2018, https://doi.org/10.5194/essd-10-251-2018, 2018
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The photosynthetic response of marine phytoplankton to available irradiance is a central part of satellite-based models of ocean productivity. This study brings together data from a variety of oceanographic campaigns to examine how the parameters of photosynthesis–irradiance response curves vary over the global ocean. This global synthesis reveals biogeographic, latitudinal and depth-dependent patterns in the photosynthetic properties of natural phytoplankton assemblages.
Emanuele Organelli, Marie Barbieux, Hervé Claustre, Catherine Schmechtig, Antoine Poteau, Annick Bricaud, Emmanuel Boss, Nathan Briggs, Giorgio Dall'Olmo, Fabrizio D'Ortenzio, Edouard Leymarie, Antoine Mangin, Grigor Obolensky, Christophe Penkerc'h, Louis Prieur, Collin Roesler, Romain Serra, Julia Uitz, and Xiaogang Xing
Earth Syst. Sci. Data, 9, 861–880, https://doi.org/10.5194/essd-9-861-2017, https://doi.org/10.5194/essd-9-861-2017, 2017
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Autonomous robotic platforms such as Biogeochemical-Argo floats allow observation of the ocean, from the surface to the interior, in a new and systematic way. A fleet of 105 of these platforms have collected several biological, biogeochemical, and optical variables in still unexplored regions. The quality-controlled databases presented here will enable scientists to improve knowledge on the functioning of marine ecosystems and investigate the climatic implications.
Angus Atkinson, Simeon L. Hill, Evgeny A. Pakhomov, Volker Siegel, Ricardo Anadon, Sanae Chiba, Kendra L. Daly, Rod Downie, Sophie Fielding, Peter Fretwell, Laura Gerrish, Graham W. Hosie, Mark J. Jessopp, So Kawaguchi, Bjørn A. Krafft, Valerie Loeb, Jun Nishikawa, Helen J. Peat, Christian S. Reiss, Robin M. Ross, Langdon B. Quetin, Katrin Schmidt, Deborah K. Steinberg, Roshni C. Subramaniam, Geraint A. Tarling, and Peter Ward
Earth Syst. Sci. Data, 9, 193–210, https://doi.org/10.5194/essd-9-193-2017, https://doi.org/10.5194/essd-9-193-2017, 2017
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KRILLBASE is a data rescue and compilation project to improve the availability of information on two key Southern Ocean zooplankton: Antarctic krill and salps. We provide a circumpolar database that combines 15 194 scientific net hauls (1926 to 2016) from 10 countries. These data provide a resource for analysing the distribution and abundance of krill and salps throughout the Southern Ocean to support ecological and biogeochemical research as well as fisheries management and conservation.
Philipp Brun, Mark R. Payne, and Thomas Kiørboe
Earth Syst. Sci. Data, 9, 99–113, https://doi.org/10.5194/essd-9-99-2017, https://doi.org/10.5194/essd-9-99-2017, 2017
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We compiled data to understand the organization of marine zooplankton based on their fundamental traits, such as body size or growth rate, rather than based on species names. Zooplankton, and in particular the dominant crustacean copepods, are central to marine food webs and the carbon cycle. The data include 14 traits and thousands of copepod species and may be used for comparisons between species or communities and ultimately to inspire better large-scale models of planktonic ecosystems.
Colleen B. Mouw, Audrey Barnett, Galen A. McKinley, Lucas Gloege, and Darren Pilcher
Earth Syst. Sci. Data, 8, 531–541, https://doi.org/10.5194/essd-8-531-2016, https://doi.org/10.5194/essd-8-531-2016, 2016
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Particulate organic carbon (POC) flux estimated from POC concentration observations from sediment traps and 234Th are compiled across the global ocean. By providing merged coincident satellite imagery products, the dataset can be used to link phytoplankton surface process with POC flux. Due to rapid remineralization within the first 500 m of the water column, shallow observations from 234Th supplement the more extensive sediment trap record.
André Valente, Shubha Sathyendranath, Vanda Brotas, Steve Groom, Michael Grant, Malcolm Taberner, David Antoine, Robert Arnone, William M. Balch, Kathryn Barker, Ray Barlow, Simon Bélanger, Jean-François Berthon, Şükrü Beşiktepe, Vittorio Brando, Elisabetta Canuti, Francisco Chavez, Hervé Claustre, Richard Crout, Robert Frouin, Carlos García-Soto, Stuart W. Gibb, Richard Gould, Stanford Hooker, Mati Kahru, Holger Klein, Susanne Kratzer, Hubert Loisel, David McKee, Brian G. Mitchell, Tiffany Moisan, Frank Muller-Karger, Leonie O'Dowd, Michael Ondrusek, Alex J. Poulton, Michel Repecaud, Timothy Smyth, Heidi M. Sosik, Michael Twardowski, Kenneth Voss, Jeremy Werdell, Marcel Wernand, and Giuseppe Zibordi
Earth Syst. Sci. Data, 8, 235–252, https://doi.org/10.5194/essd-8-235-2016, https://doi.org/10.5194/essd-8-235-2016, 2016
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A compiled set of in situ data is important to evaluate the quality of ocean-colour satellite data records. Here we describe the compilation of global bio-optical in situ data (spanning from 1997 to 2012) used for the validation of the ocean-colour products from the ESA Ocean Colour Climate Change Initiative (OC-CCI). The compilation merges and harmonizes several in situ data sources into a simple format that could be used directly for the evaluation of satellite-derived ocean-colour data.
Y. Yang, L. Hansson, and J.-P. Gattuso
Earth Syst. Sci. Data, 8, 79–87, https://doi.org/10.5194/essd-8-79-2016, https://doi.org/10.5194/essd-8-79-2016, 2016
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The exponential growth of studies on the biological response to ocean acidification over the last few decades has generated a large amount of data. To facilitate data comparison, a data compilation was initiated in 2008 and is updated on a regular basis. By January 2015, a total of 581 data sets (over 4,000,000 data points) from 539 papers had been archived.
B. Nechad, K. Ruddick, T. Schroeder, K. Oubelkheir, D. Blondeau-Patissier, N. Cherukuru, V. Brando, A. Dekker, L. Clementson, A. C. Banks, S. Maritorena, P. J. Werdell, C. Sá, V. Brotas, I. Caballero de Frutos, Y.-H. Ahn, S. Salama, G. Tilstone, V. Martinez-Vicente, D. Foley, M. McKibben, J. Nahorniak, T. Peterson, A. Siliò-Calzada, R. Röttgers, Z. Lee, M. Peters, and C. Brockmann
Earth Syst. Sci. Data, 7, 319–348, https://doi.org/10.5194/essd-7-319-2015, https://doi.org/10.5194/essd-7-319-2015, 2015
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The CoastColour Round Robin (CCRR) project (European Space Agency) was designed to set up the first database for remote-sensing algorithm testing and accuracy assessment of water quality parameter retrieval in coastal waters, from satellite imagery. This paper analyses the CCRR database, which includes in situ bio-geochemical and optical measurements in various water types, match-up reflectance products from the MEdium Resolution Imaging Spectrometer (MERIS), and radiative transfer simulations.
R. Sauzède, H. Lavigne, H. Claustre, J. Uitz, C. Schmechtig, F. D'Ortenzio, C. Guinet, and S. Pesant
Earth Syst. Sci. Data, 7, 261–273, https://doi.org/10.5194/essd-7-261-2015, https://doi.org/10.5194/essd-7-261-2015, 2015
W. Melle, J. A. Runge, E. Head, S. Plourde, C. Castellani, P. Licandro, J. Pierson, S. H. Jónasdóttir, C. Johnson, C. Broms, H. Debes, T. Falkenhaug, E. Gaard, A. Gislason, M. R. Heath, B. Niehoff, T. G. Nielsen, P. Pepin, E. K. Stenevik, and G. Chust
Earth Syst. Sci. Data, 7, 223–230, https://doi.org/10.5194/essd-7-223-2015, https://doi.org/10.5194/essd-7-223-2015, 2015
P. Licandro, M. Blackett, A. Fischer, A. Hosia, J. Kennedy, R. R. Kirby, K. Raab, R. Stern, and P. Tranter
Earth Syst. Sci. Data, 7, 173–191, https://doi.org/10.5194/essd-7-173-2015, https://doi.org/10.5194/essd-7-173-2015, 2015
L.-Q. Jiang, S. A. O'Connor, K. M. Arzayus, and A. R. Parsons
Earth Syst. Sci. Data, 7, 117–125, https://doi.org/10.5194/essd-7-117-2015, https://doi.org/10.5194/essd-7-117-2015, 2015
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With the rapid expansion of studies on biological responses of organisms to OA, the lack of a common metadata template to document the resulting data poses a significant hindrance to effective OA data management efforts. In this paper, we present a metadata template that can be applied to a broad spectrum of OA studies, including those studying the biological responses of organisms to OA. This paper defines best practices for documenting ocean acidification (OA) data.
G. Huse, B. R. MacKenzie, V. Trenkel, M. Doray, L. Nøttestad, and G. Oskarsson
Earth Syst. Sci. Data, 7, 35–46, https://doi.org/10.5194/essd-7-35-2015, https://doi.org/10.5194/essd-7-35-2015, 2015
J. K. Pinnegar, N. Goñi, V. M. Trenkel, H. Arrizabalaga, W. Melle, J. Keating, and G. Óskarsson
Earth Syst. Sci. Data, 7, 19–28, https://doi.org/10.5194/essd-7-19-2015, https://doi.org/10.5194/essd-7-19-2015, 2015
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This work describes a 148-year compilation of stomach content data for five pelagic fish species (herring, blue whiting, mackerel, albacore and bluefin tuna) sampled over a broad geographic region of the northeast Atlantic. We describe the main results in terms of diet composition and predator–prey relationships. The analyses suggests significant differences in the prey items selected by predators in different parts of the area at different times of year.
P. Lehodey, I. Senina, A.-C. Dragon, and H. Arrizabalaga
Earth Syst. Sci. Data, 6, 317–329, https://doi.org/10.5194/essd-6-317-2014, https://doi.org/10.5194/essd-6-317-2014, 2014
S. Torres Valdés, S. C. Painter, A. P. Martin, R. Sanders, and J. Felden
Earth Syst. Sci. Data, 6, 123–145, https://doi.org/10.5194/essd-6-123-2014, https://doi.org/10.5194/essd-6-123-2014, 2014
Cited articles
Abreu, P. C., Bergesch, M., Proença, L. A., Garcia, C. A. E., and Odebrecht, C.: Short-and long-term chlorophyll a variability in the shallow microtidal Patos Lagoon estuary, Southern Brazil, Estuar. Coast., 33, 554–569, https://doi.org/10.1007/s12237-009-9181-9, 2010.
Abreu, P. C., Marangoni, J., and Odebrecht, C.: So close, so far: differences in long-term chlorophyll a variability in three nearby estuarine-coastal stations, Mar. Biol. Res., 13, 1–13, https://doi.org/10.1080/17451000.2016.1189081, 2016.
Amaral, A. C. Z. and Nonato, E. F. (Eds.): Annelida Polychaeta. Características glossário e chaves para famílias e gêneros da costa brasileira, Editora Unicamp, Brazil, ISBN 85-268-0375-1, 1996.
Balech, E.: Los dinoflagelados del Atlántico sudoccidental, Publ. Espec. Inst. Esp. Oceanogr., 1, 1–310, http://hdl.handle.net/10508/993 (last access: 25 March 2019), 1988.
Baumgarten, M. G. Z. and Niencheski, L. F. H.: A coluna sedimentar como reservatório e fonte de nutrientes em enseadas estuarinas, Trop. Oceanogr., 38, 88–155, https://doi.org/10.5914/tropocean.v38i1.5163, 2010.
Bergesch, M., Garcia, M., and Odebrecht, C.: Diversity and morphology of Skeletonema species in Southern Brazil, Southwestern Atlantic Ocean, J. Phycol., 45, 1348–1352, https://doi.org/10.1111/j.1529-8817.2009.00743.x, 2009.
Bernardino, A. F., Netto, S. A., Pagliosa, P. R., Barros, F., Christofoletti, R. A., Rosa Filho, J. S., Colling, A., and Lana, P. C.: Predicting ecological changes on benthic estuarine assemblages through decadal climate trends along Brazilian Marine Ecoregions, Estuar. Coast. Shelf S., 166, 74–82, https://doi.org/10.1016/j.ecss.2015.05.021, 2015.
Biodiversity Information Standards (TDWG): Darwin Core
Terms: A quick reference guide, http://www.tdwg.org/, last
access: 10 October 2020.
Björnberg, T. K. S.: Copepoda, in: Atlas del Zooplancton del Atlántico Sudoccidental y métodos de trabajo con el zooplancton marino, edited by: Boltovskoy, D., Pub. Esp. INIDEP, Mar del Plata, Argentina, 587–679, 1981.
Boltovskoy, D. (Ed.): Atlas Del Zooplancton Del Atlantico Sudoccidental Y Metodos De Trabajo Con El Zooplancton Marino, INIDEP, Mar del Plata, Argentina, 1981.
Boltovskoy, D. (Ed.): South Atlantic Zooplankton, vol. 1–2, Backhuys Publishers, Leiden, ISBN 9057820358 9789057820359, 1999.
Bradford-Grieve, J. M.: Copepoda – Sub-Order: Calanoida – Family: Acartiidae – Genus: Acartia, in: Fiches d'identification du Zooplancton No. 12, ICES, Copenhagen, 1–19, ISSN 1019-1097, 1999.
Brett, A., Leape, J., Abbott, M., Sakaguchi, H., Cao, L., Chand, K., Golbuu, Y., Martin, T. J., Mayorga, J., and Myksvoll, M. S.: Ocean data need a sea change to help navigate the warming world, Nature, 582, 181–183, https://doi.org/10.1038/d41586-020-01668-z, 2020.
Bruno, M. A. and Muelbert, J. H.: Distribuição espacial e variações temporais da abundância de ovos e larvas de Micropogonias furnieri no estuário da Lagoa dos Patos: registros históricos e forçantes ambientais, Atlântica, 31, 51–68, https://doi.org/10.5088/atl.2009.31.1.51, 2009.
Buckup, L. and Bond-Buckup, G.: Os Crustáceos Do Rio Grande Do Sul, Editora da Universidade Federal do Rio Grande do Sul, Brazil, ISBN 9788570255020, 1999.
Carstensen, J.: Need for monitoring and maintaining sustainable marine ecosystem services, Front. Mar. Sci., 1, 1–4, https://doi.org/10.3389/fmars.2014.00033, 2014.
Castello, J. P. and Möller Jr., O. O.: On the relationship between rainfall and shrimp production in the estuary of the Patos Lagoon (RS-Brazil), Atlântica, 3, 67–74, 1978.
Christian, R. R. and Mazzilli, S.: Defining the coast and sentinel ecosystems for coastal observations of global change, Hydrobiologia, 577, 55–70, https://doi.org/10.1007/978-1-4020-6008-3_6, 2007.
Colling, L. A. and Cavalca Bom, F.: Temporal data series of Benthic macrofauna abundance and composition from the Patos Lagoon estuary, GBIF [data set], https://doi.org/10.15468/lsoc2v, 2020.
Colling, L. A., Bemvenuti, C. E., and Gandra, M. S.: Seasonal variability on the structure of sublittoral macrozoobenthic association in the Patos Lagoon estuary, southern Brazil, Iheringia, Ser. Zool., 97, 257–262, https://doi.org/10.1590/S0073-47212007000300007, 2007.
Colling, L. A., Bemvenuti, C. E., and Pinotti, R. M.: Temporal variability of the bivalve Erodona mactroides BOSC, 1802 during and after the El Niño phenomenon (2002/2003) in a subtropical lagoon, southern Brazil, Acta Limnol. Bras., 22, 410–423, https://doi.org/10.4322/actalb.2011.006, 2010.
CONCEA: Diretrizes da prática de eutanásia do CONCEA, Ministério da Ciência, Tecnologia e Inovação Conselho Nacional de Controle de Experimentação Animal, Brasil, 2013.
Copertino, M.: Dynamics of Submerged Aquatic Vegetation
in the Patos Lagoon estuary, GBIF [data set], https://doi.org/10.15468/bjzlnb, 2020.
Copertino, M. and Seeliger, U.: Habitats de Ruppia maritima e de macroalgas, in: O estuário da Lagoa dos Patos: Um Século de Transformações, edited by: Seeliger, U. and Odebrecht, C., Editora FURG, Brazil, 89–98, ISBN 978-85-7566-144-4, 2010.
Copertino, M. S., Creed, J. C., Magalhães, K. M.,
Barros, K. D. S., Lanari, M. D. O., Arévalo, P. R., and Horta,
P. A.: Monitoramento dos fundos vegetados submersos (pradarias
submersas), in: Protocolos para o Monitoramento de Habitats
Bentônicos Costeiros – Rede de Monitoramento de Habitats
Bentônicos Costeiros – ReBentos, edited by: Turra, A. and
Denadai, M., 1st edn., Instituto Oceanográfico da Universidade de São Paulo – IO/USP, Brazil, https://doi.org/10.7476/9788598729251, 2015.
Copertino, M. S., Creed, J. C., Lanari, M., Magalhães, K., Barros, K., Lana, P. C., Sordo, L., and Horta, P. A.: Seagrass and submerged aquatic vegetation (VAS) habitats off the coast of Brazil: state of knowledge, conservation and main threats, Braz. J. Oceanogr., 64, 53–80, https://doi.org/10.1590/S1679-875920161036064sp2, 2016.
Costa, M. D. and Muelbert, J. H.: Long-term assessment of temporal variability in spatial patterns of early life stages of fishes to facilitate estuarine conservation, Mar. Biol. Res., 13, 1–14, https://doi.org/10.1080/17451000.2016.1213397, 2016.
Costa, M. D., Muelbert, J. H., Moraes, L. E., Vieira, J. P., and Castello, J. P.: Estuarine early life stage habitat occupancy patterns of whitemouth croaker Micropogonias furnieri (Desmarest, 1830) from the Patos Lagoon, Brazil, Fish. Res., 160, 77–84, https://doi.org/10.1016/j.fishres.2013.10.025, 2013.
Costa, M. D., Possingham, H. P., and Muelbert, J. H.: Incorporating early life stages of fishes into estuarine spatial conservation planning, Aquat. Conserv., 26, 1013–1030, https://doi.org/10.1002/aqc.2584, 2016.
D'Incao, F.: Pesca e biologia de Penaeus paulensis na Lagoa dos Patos, RS, Atlântica, 13, 159–169, 1991.
De Pooter, D., Appeltans, W., Bailly, N., Bristol, S., Deneudt, K., Eliezer, M., Fujioka, E., Giorgetti, A., Goldstein, P., Lewis, M., Lipizer, M., Mackay, K., Marin, M., Moncoiffé, G., Nikolopoulou, S., Provoost, P., Rauch, S., Roubicek, A., Torres, C., van de Putte, A., Vandepitte, L., Vanhoorne, B., Vinci, M., Wambiji, N., Watts, D., Salas, E. K., and Hernandez, F.: Toward a new data standard for combined marine biological and environmental datasets-expanding OBIS beyond species occurrences, Biodivers. Data J., 5, 1–37, https://doi.org/10.3897/BDJ.5.e10989, 2017.
Doney, S. C. and Schimel, D.: Climate Change and Biogeochemical Impacts, eLS, https://doi.org/10.1002/9780470015902.a0003242.pub3, 2015.
Dreujou, E., Carrier-Belleau, C., Goldsmit, J., Fiorentino, D., Ben-Hamadou, R., Muelbert, J. H., Godbold, J. A., Daigle, R. M., and Beauchesne, D.: Holistic Environmental Approaches and Aichi Biodiversity Targets: accomplishments and perspectives for marine ecosystems, Peer J., 8, 1–22, https://doi.org/10.7717/peerj.8171, 2020.
Duffy, J. E., Amaral-Zettler, L. A., Fautin, D. G., Paulay, G., Rynearson, T. A., Sosik, H. M., and Stachowicz, J. J.: Envisioning a marine biodiversity observation network, Bioscience, 63, 350–361, https://doi.org/10.1525/bio.2013.63.5.8, 2013.
Dumont, L. F. C.: Ecology of the pink-shrimp
Penaeus paulensis in Patos Lagoon estuary, GBIF [data set], https://doi.org/10.15468/ovayhc, 2020.
Fahay, M. P.: Guide to the early stages of marine fishes occurring in the western North Atlantic Ocean, Cape Hatteras to the southern Scotian Shelf, J. Northwest Atl. Fish. Sci., 4, 1–423, 1983.
Figueiredo, J. L. (Ed.): Manual De Peixes Marinhos Do Sudeste Do Brasil. I. Introdução. Cações, Raias E Quimeras, Museu de Zoologia da Universidade de São Paulo, Brazil, https://doi.org/10.5962/bhl.title.109986, 1977.
Figueiredo, J. L. and Menezes, N. A. (Eds.): Manual De Peixes Marinhos Do Sudeste Do Brasil. II. Teleostei (1), Museu de Zoologia da Universidade de São Paulo, Brazil, https://doi.org/10.5962/bhl.title.109986, 1978.
Figueiredo, J. L. and Menezes, N. A. (Eds.): Manual De Peixes Marinhos Do Sudeste Do Brasil. III. Teleostei (2) Museu de Zoologia da Universidade de São Paulo, Brazil, https://doi.org/10.5962/bhl.title.109986, 1980.
Figueiredo, J. L. and Menezes, N. A. (Eds.): Manual De Peixes Marinhos Do Sudeste Do Brasil. VI. Teleostei (5), Museu de Zoologia da Universidade de São Paulo, Brazil, 2000.
Fischer, L. G., Pereira, L. E. D., and Vieira, J. P. (Eds.): Peixes Estuarinos E Costeiros, Ecoscientia, Rio Grande, Brazil, ISBN 9788591209514, 2004.
Franco, A. D. O. D. R., They, N. H., Canani, L. G. D. C., Maggioni, R., and Odebrecht, C.: Asterionellopsis tropicalis (Bacillariophyceae): a new tropical species found in diatom accumulations, J. Phycol., 52, 888–895, https://doi.org/10.1111/jpy.12435, 2016.
Franzen, M. O., Fernandes, E. H. L., and Muelbert, J. H.: Influence of wind events on the transport of early stages of Micropogonias furnieri (Desmarest, 1823) to a subtropical estuary, Lat. Am. J. Aquat. Res., 47, 536–546, https://doi.org/10.3856/vol47-issue3-fulltext-15, 2019.
Froese, R. and Pauly, D.: FishBase, World Wide Web electronic publication, https://www.fishbase.org, last access: 14 April 2020.
Fruet, P. F., Secchi, E. R., Di Tullio, J. C., and Kinas, P. G.: Abundance of bottlenose dolphins, Tursiops truncatus (Cetacea: Delphinidae), inhabiting the Patos Lagoon estuary, southern Brazil: implications for conservation, Zoologia., 28, 23–30, https://doi.org/10.1590/S1984-46702011000100004, 2011.
Fruet, P. F., Secchi, E. R., Daura-Jorge, F., Vermeulen, E., Flores, P. A. C., Simões-Lopes, P. C., Genoves, R. C., Laporta, P., Di Tullio, J. C., Freitas, T. R. O., Rosa, L. D., Valiati, V. H., Beheregaray, L. B., and Möller, L. M.: Remarkably low genetic diversity and strong population structure in common bottlenose dolphins (Tursiops truncatus) from coastal waters of the Southwestern Atlantic Ocean, Conserv. Genet., 15, 879–895, https://doi.org/10.1007/s10592-014-0586-z, 2014.
Fruet, P. F., Genoves, R. C., Möller, L. M., Botta, S., and Secchi, E. R.: Using mark-recapture and stranding data to estimate reproductive traits in female bottlenose dolphins (Tursiops truncatus) of the Southwestern Atlantic Ocean, Mar. Biol., 162, 661–673, https://doi.org/10.1007/s00227-015-2613-0, 2015.
Garcia, A. M., Vieira, J. P., and Winemiller, K. O.: Dynamics of the shallow-water fish assemblage of the Patos Lagoon estuary (Brazil) during cold and warm ENSO episodes, J. Fish Biol., 59, 1218–1238, https://doi.org/10.1111/j.1095-8649.2001.tb00187.x, 2001.
Garcia, A. M., Vieira, J. P., and Winemiller, K. O.: Effects of 1997–1998 El Niño on the dynamics of the shallow-water fish assemblage of the Patos Lagoon Estuary (Brazil), Estuar. Coast. Shelf S., 57, 489–500, https://doi.org/10.1016/S0272-7714(02)00382-7, 2003.
Garcia, A. M., Vieira, J. P., Winemiller, K. O., and Grimm, A. M.: Comparison of 1982–1983 and 1997–1998 El Niño effects on the shallow-water fish assemblage of the Patos Lagoon estuary (Brazil), Estuaries, 27, 905–914, https://doi.org/10.1007/BF02803417, 2004.
Garcia, A. M., Vieira, J. P., Winemiller, K. O., Moraes,
L. E., and Paes, E. T.: Factoring scales of spatial and temporal
variation in fish abundance in a subtropical estuary,
Mar. Ecol. Prog. Ser., 461, 121–135, https://doi.org/10.3354/meps09798, 2012.
Garcia, A. M., Winemiller, K. O., Hoeinghaus, D. J.,
Claudino, M. C., Bastos, R., Correa, F., Huckembeck, S., Vieira, J.,
Loebmann, D., Abreu, P. C., and Ducatti, C.: Hydrologic pulsing
promotes spatial connectivity and food web subsidies in a
subtropical coastal ecosystem, Mar. Ecol. Prog. Ser., 567, 17–28, https://doi.org/10.3354/meps12060, 2017.
Garcia, M. and Odebrecht, C.: Chave dicotômica ilustrada para a identificação de espécies de Thalassiosira cleve (diatomácea) no estuário da Lagoa dos Patos e área costeira adjacente (Rio Grande do Sul, Brasil), Biota Neotrop., 9, 239–253, https://doi.org/10.1590/S1676-06032009000200023, 2009.
Genoves, R. C., Fruet, P. F., Di Tullio, J. C., Möller, L. M., and Secchi, E. R.: Spatiotemporal use predicts social partitioning of bottlenose dolphins with strong home range overlap, Ecol. Evol., 8, 12597–12614, https://doi.org/10.1002/ece3.4681, 2018.
Genoves, R. C., Fruet, P. F., Botta, S., Beheregaray, L. B., Möller, L. M., and Secchi, E. R.: Fine-scale genetic structure in Lahille's bottlenose dolphins (Tursiops truncatus gephyreus) is associated with social structure and feeding ecology, Mar. Biol., 167, 1–16, https://doi.org/10.1007/s00227-019-3638-6, 2020.
Gouveia, G. R., Trindade, G. S., Nery, L. E. M., and Muelbert, J. H.: UVA and UVB penetration in the water column of a South West Atlantic warm temperate estuary and its effects on cells and fish larvae, Estuar. Coast., 38, 1147–1162, https://doi.org/10.1007/s12237-015-9996-5, 2015.
Gray, J. S. and Elliott, M. (Eds.): Ecology of Marine Sediments, 2nd edn., Oxford: Oxford University Press, EUA, ISBN 978-0-19-856901-5, 2009.
Grimm, A. M., Ferraz, S. E. T., and Gomes, J.: Precipitation anomalies in Southern Brazil associated with El Niño and La Niña events, J. Climate, 11, 2863–2880, https://doi.org/10.1175/1520-0442(1998)011<2863:PAISBA>2.0.CO;2, 1998.
Hagström, J. A., Granéli, E., Moreira, M. O., and Odebrecht, C.: Produção de ácido domóico e composição elementar de duas cepas multissérie de Pseudo-nitzschia, do NW e SW do Oceano Atlântico, crescendo em culturas quimiostáticas limitadas por fósforo ou nitrogênio, J. Plankton Res., 33, 297–308, 2011.
Haimovici, M. and Cardoso, L. G.: Long-term changes in the fisheries in the Patos Lagoon estuary and adjacent coastal waters in Southern Brazil, Mar. Biol. Res., 13, 135–150, https://doi.org/10.1080/17451000.2016.1228978, 2017.
Haimovici, M., Castello, J. P., and Abdallah, P. R.: Desenvolvimento da pesca industrial sediada em Rio Grande: uma visão histórica sob a ótica de atores privilegiados, in: A pesca marinha e estuarina no Brasil: estudos de caso, edited by: Haimovici, M., Andriguetto, J. M., and Sunye, P. S., Editora da FURG, Brazil, 17–28, ISBN 978-85-7566-335-6, 2014.
Halpern, B. S., Walbridge, S., Selkoe, K. A., Kappel, K. V., Micheli, F., D'agrosa, K., Bruno, J. F., Casey, K. S., Ebert, C., Fox, H. E., Fujita, R., Heinemann, D., Lenihan, H. S., Madin, E. M. P., Perry, M. T., Selig, E. R., Spalding, M., Steneck, R., and Watson, R.: A global map of human impact on marine ecosystems, Science, 319, 948–952, https://doi.org/10.1126/science.1149345, 2008.
Haraguchi, L., Carstensen, J., Abreu, P. C., and Odebrecht, C.: Long-term changes of the phytoplankton community and biomass in the subtropical shallow Patos Lagoon Estuary, Brazil, Estuar. Coast. Shelf S., 162, 76–87, https://doi.org/10.1016/j.ecss.2015.03.007, 2015.
Hastings, R. A., Rutterford, L. A., Freer, J. J.,
Collins, R. A., Simpson, S. D., and Genner, M. G.: Climate change
drives pole ward increases and equator ward declines in marine
species, Curr. Biol., 30, 1572–1577, https://doi.org/10.1016/j.cub.2020.02.043, 2020.
Hoppenrath, M., Elbrächter, M., and Drebes, G. (Eds.): Marine Phytoplankton, Kleine Senckenberg-Reihe, Band 49, Germany, ISBN 9783510613922, 2009.
Kalikoski, D. C. and Vasconcellos, M.: Case study of the technical, socio-economic and environmental conditions of small-scale fisheries in the estuary of Patos Lagoon, Brazil: a methodology for assessment, FAO Fisheries and Aquaculture, Circular C1075I, ISBN 978-92-5-107142-7, 2012.
Kennish, M. J. and Paerl, H. W. (Eds.): Coastal Lagoons: Critical Habitats of Environmental Change, CRC Press, EUA, ISBN 9781420088304, 2010.
Kjerfve, B.: Comparative oceanography of coastal lagoons, in: Estuarine variability, edited by: Wolfe, D. A., Academic Press, 63–81, https://doi.org/10.1016/B978-0-12-761890-6.50009-5, 1986.
Lanari, M. and Copertino, M.: Drift macroalgae in the Patos Lagoon Estuary (southern Brazil): effects of climate, hydrology and wind action on the onset and magnitude of blooms, Mar. Biol. Res., 13, 36–47, https://doi.org/10.1080/17451000.2016.1225957, 2017.
Lanari, M., Claudino, M. C., Garcia, A. M., and Copertino, M.: Changes in the elemental (C, N) and isotopic (δ13C, δ15N) composition of estuarine plants during diagenesis and implications for ecological studies, J. Exp. Mar. Biol. Ecol., 500, 46–54, https://doi.org/10.1016/j.jembe.2017.12.013, 2018.
Lang, W. H.: Larval development of shallow water barnacles of the carolinas (Cirripedia: Thoracica) with keys to naupliar stages, NOAA Technical Report NMFS, Circular 421, https://doi.org/10.5962/bhl.title.63163, 1979.
Lang, W. H.: Cirripedia: balanomorph nauplii of the NW Atlantic shores, Fiche 163, Fiches d'Identification du Zooplancton, Conseil International pour l'Exploration de la Mer (CIEM), Scotland, https://doi.org/10.17895/ices.pub.5148, 1980.
Lotze, H. K., Lenihan, H. S., Bourque, B. J., Bradbury, R. H., Cooke, R. G., Kay, M. C., Kidwell, S. M., Kirby, M. X., Peterson, C. H., and Jackson, J. B. C.: Depletion, degradation, and recovery potential of estuaries and coastal seas, Science, 312, 1806–1809, https://doi.org/10.1126/science.1128035, 2006.
Lyons, T. W., Reinhard, C. T., and Planavsky, N. J.: The rise of oxygen in Earth's early ocean and atmosphere, Nature, 506, 307–315, https://doi.org/10.1038/nature13068, 2014.
McLusky, D. S. and Elliott, M.: The Estuarine Ecosystem: Ecology, Threats and Management, OUP Oxford, EUA, https://doi.org/10.1093/acprof:oso/9780198525080.001.0001, 2004.
Menezes, N. A. and Figueiredo, J. L. (Eds.): Manual De Peixes Marinhos Do Sudeste Do Brasil. IV. Teleostei (3), Museu de Zoologia da Universidade de São Paulo, Brazil, 1980.
Menezes, N. A. and Figueiredo, J. L. (Eds.): Manual De Peixes Marinhos Do Sudeste Do Brasil. V. Teleostei (4) Museu de Zoologia da Universidade de São Paulo, Brazil, 1985.
Möller, O. O., Castaing, P., Salomon, J. C., and Lazure, P.: The influence of local and non-local forcing effects on the subtidal circulation of Patos Lagoon, Estuaries, 24, 297–311, https://doi.org/10.2307/1352953, 2001.
Moraes, L. E., Paes, E., Garcia, A. M., Moller Jr, O., and Vieira, J. P.: Delayed response of fish abundance to environmental changes: a novel multivariate time-lag approach, Mar. Ecol. Prog. Ser., 456, 159–168, https://doi.org/10.3354/meps09731, 2012.
Moser, H. G.: The Early Stages Of Fishes In The California Current Region, CalCOFI Atlas, EUA, ISBN 0-935868-82-8, 1996.
Muelbert, J. H.: Interannual variability of
ichthyoplankton diversity in the Patos Lagoon estuary Southern
Brazil, GBIF [data set], https://doi.org/10.15468/noeqwa, 2020.
Muelbert, J. H., Nidzieko, N. J., Acosta, A. T. R., Beaulieu, S. E., Bernardino, A. F., Boikova, E., Bornman, T. G., Cataletto, B., Deneudt, K., Eliason, E., Kraberg, A., Nakaoka, M., Pugnetti, A., Ragueneau, O., Scharfe, M., Soltwedel, T., Sosik, H. M., Stanisci, A., Stefanova, K., Stéphan, P., Stier, A., Wikner, J., and Zingone, A.: ILTER – The International Long-Term Ecological Research Network as a Platform for Global Coastal and Ocean Observation, Front. Mar. Sci., 6, 01–14, https://doi.org/10.3389/fmars.2019.00527, 2019.
Muxagata, E. and Teixeira-Amaral, P.: Continuous
monitoring of the micro and mesozooplankton of the Patos Lagoon
estuary and adjacent coastal area, GBIF [data set], https://doi.org/10.15468/1xkowr, 2020.
Muxagata, E., Amaral, W. J., and Barbosa, C. N.: Acartia tonsa production in the Patos Lagoon estuary, Brazil, ICES J. Mar. Sci., 69, 475–482, https://doi.org/10.1093/icesjms/fsr166, 2012.
Newton, A., Brito, A. C., Icely, J. D., Derolez, V., Clara, I., Angus, S., Schernewski, G., Inácio, M., Lillebø, A. I., Sousa, A. I., Béjaoui, B., Solidoro, C., Tosic, M., Cañedo-Argüelles, M., Yamamuro, M., Reizopoulou, S., Tseng, H.-C., Canu, D., Roselli, L., Maanan, M., Cristina, S., Ruiz-Fernández, A. C., de Lima, R. F., Kjerfve, B., Rubio-Cisneros, N., Pérez-Ruzafa, A., Marcos, C., Pastres, R., Pranovi, F., Snoussi, M., Turpie, J., Tuchkovenko, Y., Dyack, B., Brookes, J., Povilanskas, B., and Khokhlov, V.: Assessing, quantifying and valuing the ecosystem services of coastal lagoons, J. Nat. Conserv., 44, 50–65, https://doi.org/10.1016/j.jnc.2018.02.009, 2018.
Odebrecht, C. and Abreu, P. C.: Phytoplankton and water
quality parameters in the Patos Lagoon estuary and adjacent marine
coast, GBIF [data set], https://doi.org/10.15468/xmlvxm, 2020.
Odebrech, C. and Castello, J. P.: The Convergence Ecosystem in the Southwest Atlantic, in: Subtropical Convergence Environments: The coast and sea in the Southwestern Atlantic, edited by: Seeliger, U. and Kjerfve, B., Ecological Studies (Analysis and Synthesis), vol. 144, Springer, Berlin, 145–165, https://doi.org/10.1007/978-3-662-04482-7_12, 2001.
Odebrecht, C., Abreu, P. C., Bemvenuti, C. E., Copertino, M., Muelbert, J. H., Vieira, J. P., and Seeliger, U.: The Patos Lagoon Estuary: biotic responses to natural and anthropogenic impacts in the last decades (1979–2008), in: Coastal lagoons: critical habitats of environmental change, edited by: Kennish, M. J. and Paerl, H. W., CRC Press, EUA, 437–459, ISBN 9781420088304, 2010.
Odebrecht, C., Abreu, P. A., Bemvenuti, C. E., Colling, L. A., Copertino, M., Costa, C. S. B., Garcia, A. M., Marangoni, J. C., Moller, O. O., Muelbert, J. H., Vieira, J., and Seeliger, U.: O efeito de perturbações naturais e antrópicas na ecologia do Estuário da Lagoa dos Patos, in: PELD-CNPQ, dez anos do programa de pesquisas ecológicas de longa duração do Brasil: achados, lições e perspectivas, edited by: Tabarelli, M., Rocha, C. F. D., Romanowski, H. P., Rocha, O., and Lacerda, L. D., Editora Universitaria UFPE, Brazil, 223–248, ISBN 978-85-415-0329-7, 2013.
Odebrecht, C., Abreu, P. C., and Carstensen, J.: Retention time generates short-term phytoplankton blooms in a shallow microtidal subtropical estuary, Estuar. Coast. Shelf S., 162, 35–44, https://doi.org/10.1016/j.ecss.2015.03.004, 2015.
Odebrecht, C., Secchi, E. R., Abreu, P. C., Muelbert, J. H., and Uiblein, F.: Biota of the Patos Lagoon estuary and adjacent marine coast: long-term changes induced by natural and human-related factors, Mar. Biol. Res., 13, 3–8, https://doi.org/10.1080/17451000.2016.1258714, 2017.
Olivar, M. P., Moser, H. G., and Beckley, L. E.: Lanternfish larvae from the Agulhas current (SW Indian Ocean), Sci. Mar., 63, 101–120, https://doi.org/10.3989/scimar.1999.63n2101, 1999.
Paerl, H. W., Yin, K., and O'Brien, T. D.: SCOR Working Group 137: Global Patterns of Phytoplankton Dynamics in Coastal Ecosystems: An introduction to the special issue of Estuarine, Coastal and Shelf Science, Estuar. Coast. Shelf S., 162, 1–3, https://doi.org/10.1016/j.ecss.2015.07.011, 2015.
Pilotto, F., Kühn, I., Adrian, R., Alber, R.,
Alignier, A., Andrews, C., Bäck, J., Barbaro, L., Beaumont, D.,
Beenaerts, N., Benham, S., Boukal, D. S., Bretagnolle, V., Camatti,
E., Canullo, R., Cardoso, P. G., Ens, B. J., Everaert, G., Evtimova,
V., Feuchtmayr, H., García-González, R., García,
D. G., Grandin, U., Gutowski, J. M., Hadar, L., Halada, L., Halassy,
M., Hummel, H., Huttunen, K.-L., Jaroszewicz, B., Jensen, T. C.,
Kalivoda, H., Schmidt, I. K., Kröncke, I., Leinonen, R.,
Martinho, F., Meesenburg, H., Meyer, J., Minerbi, S., Monteith, D.,
Nikolov, B. P., Oro, D., Ozolinš, D., Padedda, B. M., Pallett,
D., Pansera, M., Pardal, M. A., Petriccione, B., Pipan, T.,
Pöyry, J., Schäfer, S. M., Schaub, M., Schneider, S. C.,
Skuja, A., Soetaert, K., Sprige, G., Stanchev, R., Stockan, J. A., Stoll, S., Sundqvist, L., Thimonier, A., Van Hoey, G., Van Ryckegem, G., Visser, M. E., Vorhauser, S., and Haase, P.: Meta-analysis of multidecadal biodiversity trends in Europe, Nat. Commun., 11, 1–11, https://doi.org/10.1038/s41467-020-17171-y, 2020.
Possamai, B., Vieira, J. P., Grimm, A. M., and Garcia, A. M.: Temporal variability (1997-2015) of trophic fish guilds and its relationships with El Niño events in a subtropical estuary, Estuar. Coast. Shelf S., 202, 145–154, https://doi.org/10.1016/j.ecss.2017.12.019, 2018.
Richards, W. J. (Ed.): Early stages of Atlantic fishes. An Identification Guide for the Western Central North Atlantic, CRC Press, Boca Raton, Florida, EUA, https://doi.org/10.1201/9780203500217, 2005.
Rios, E. (Ed.): Compendium of Brazilian Sea Shells, Evan Graf, Brazil, ISBN 9788577271733, 2009.
Robertson, A. W. and Mechoso, C. R.: Interannual and Decadal Cycles in River Flows of Southeastern South America, J. Climate, 11, 2570–2581, https://doi.org/10.1175/1520-0442(1998)011<2570:IADCIR>2.0.CO;2, 1997.
Rose, M. (Ed.): Faune de France 26 – Copepodes pelagiques, Federation Francaise des Societes de Sciences Naturelles, Paris, France, https://doi.org/10.1038/132767a0, 1933.
Ruiz, G. M., Fofonoff, P. W., Carlton, J. T., Wonham, M. J., and Hines, A. H.: Invasion of coastal marine communities in North America: apparent patterns, processes, and biases, Annu. Rev. Ecol. Evol. S., 31, 481–531, https://doi.org/10.1146/annurev.ecolsys.31.1.481, 2000.
Salvador, N. L. A. and Muelbert, J. H.: Environmental Variability and Body Condition of Argentine Menhaden Larvae, Brevoortia pectinata (Jenyns, 1842), in: Estuarine and Coastal Waters, Estuar. Coast., 42, 1654–1661, https://doi.org/10.1007/s12237-019-00604-3, 2019.
Secchi, E. R., Botta, S., Wiegand, M. M., Lopez, L. A., Fruet, P. F., Genoves, R. C., and Di Tullio, J. C.: Long-term and gender-related variation in the feeding ecology of common bottlenose dolphins inhabiting a subtropical estuary and the adjacent marine coast in the western South Atlantic, Mar. Biol. Res., 13, 121–134, https://doi.org/10.1080/17451000.2016.1213398, 2017.
Secchi, E. R., Fruet, P., and Genoves, R. C.: Ecology of
Lahille's bottlenose dolphin Tursiops truncatus gephyreus
in the Patos Lagoon estuary and adjacent marine coast, GBIF [data set], https://doi.org/10.15468/4nh9ng, 2020.
Seeliger, U.: The Patos Lagoon Estuary, Brazil, in: Coastal marine ecosystems of Latin América, edited by: Seeliger, U. and Kjerfve, B., Springer, Berlin, Heidelberg, 167–183, ISBN 3540672281 9783540672289, 2001.
Seeliger, U. and Odebrecht, C. (Eds.): O Estuário da Lagoa dos Patos: um século de transformações, Editora da Furg, Brazil, ISBN 978-85-7566-144-4, 2010.
Steedman, H. F. V.: Aldehydes – 1, General and applied data on formaldehyde fixation and preservation of marine zooplankton, in: Monographs on oceanographic methodology, No. 4 – Zooplankton fixation and preservation, edited by: Steedman, H. F., UNESCO Press, Paris, 103–154, ISBN 92-3-101272-x, 1976.
Strickland, J. D. and Parsons, T. R.: A practical handbook of seawater analysis, B. Fish. Res. Board Can., 167, 1–309, https://doi.org/10.1002/iroh.19700550118, 1972.
Tanhua, T., Pouliquen, S., Hausman, J., Obrien, K., Bricher, P., Bruin, T., Buck, J. J. H., Burger, E. F., Carval, T., Casey, K. S., Diggs, S., Giorgetti, A., Glaves, H., Harscoat, V., Kinkade, D., Muelbert, J. H., Novellino, A., Pfeil, B., Pulsifer, P. L., Putte, A. V., Robinson, E., Schaap, D., Smirnov, A., Smith, N., Snowden, D., Spears, T., Stall, S., Tacoma, M., Thijsse, P., Tronstad, S., Vandenberghe, T., Wengren, M., Wyborn, L., and Zhao, Z.: Ocean FAIR Data Services, Front. Mar. Sci., 6, 1–17, https://doi.org/10.3389/fmars.2019.00440, 2019.
Teixeira-Amaral, P., Amaral, W. J. A., de Ortiz, D. O., Agostini, V. O., and Muxagata, E.: The mesozooplankton of the Patos Lagoon Estuary, Brazil: trends in community structure and secondary production, Mar. Biol. Res., 13, 48–61, https://doi.org/10.1080/17451000.2016.1248850, 2017.
Tomas, C. R. (Ed.): Marine Diatoms and Dinoflagellates, Academic Press, USA, https://doi.org/10.1201/9780203500217, 1996.
Tomas, C. R. (Ed.): Identifying Marine Phytoplankton, Academic Press, USA, ISBN 9780126930184, 1997.
Turra, A. and Denadai, M. R.: Linking biodiversity and global environmental changes in Brazilian coastal habitats, Braz. J. Oceanogr., 64, 3–4, https://doi.org/10.1590/S1679-87592016064sp2ed, 2016.
UNESCO: Chemical methods for use in marine environmental monitoring. Manual and Guides 12, Intergovernamental Oceanographic Commissiony, France, https://doi.org/10.25607/OBP-1419, 1983.
Vieillard, A. M., Newell, S. E., and Thrush, S. F.: Recovering from bias: A call for further study of underrepresented tropical and low-nutrient estuaries, J. Geophys. Res.-Biogeo., 125, e2020JG005766, https://doi.org/10.1029/2020JG005766, 2020.
Vieira, J. P., Garcia, A. M., and Grimm, A. M.: Evidences of El Niño effects on the mullet fishery of the Patos Lagoon Estuary, Braz. Arch. Biol. Techn., 51, 433–440, 2008.
Vieira, J. P., Garcia, A. M., and Moraes, L.: A assembleia de peixes, in: O Estuário da Lagoa dos Patos: Um Século de Transformações, edited by: Seeliger, U. and Odebrecht, C., FURG, Rio Grande, Brazil, 79–88, ISBN 978-85-7566-144-4, 2010.
Vieira, J. P., Garcia, A. M., and Lemos, V. M.: Species
composition and abundance patterns of fish assemblages at shallow
waters of Patos Lagoon estuary, GBIF [data set], https://doi.org/10.15468/kci8zb, 2020.
Vihervaara, P., D'Amato, D., Forsius, M., Angelstam, P., Baessler, C., Balvanera, P., Boldgiv, B., Bourgeron, P., Dick, J., Kanka, R., Klotz, S., Maass, M., Melecis, V., Petrík, P., Shibata, H., Tang, J., Thompson, J., and Zacharias, S.: Using long-term ecosystem service and biodiversity data to study the impacts and adaptation options in response to climate change: insights from the global ILTER sites network, Curr. Opin. Env. Sust., 5, 53–66, https://doi.org/10.1016/j.cosust.2012.11.002, 2013.
Von Ihering, H.: Rio Grande do Sul, Reuss, Weltpost-verlag P. Genschel, Germany, ISBN 0364521961, 9780364521960, 1885.
Weiss, G. (Ed.): Ictioplâncton Del Estuário De Lagoa Dos Patos, Brasil, Faculatad de Ciências Naturales y Museo, Universidad Nacional de La Plata, Argentina, https://doi.org/10.35537/10915/5041, 1981.
Welschmeyer, N. A.: Fluorometric analysis of chlorophyll a in the presence of chlorophyll b and pheopigments, Limnol. Oceanogr. Lett., 39, 1985–1992, https://doi.org/10.4319/lo.1994.39.8.1985, 1994.
Wilkinson, M. D., Dumontier, M., Aalbersberg, I. J.,
Appleton, G., Axton, M., Baak, A., Blomberg, N., Boiten, J.-W., da
Silva Santos, L. B., Bourne, P. E., Bouwman, J., Brookes, A. J.,
Clark, T., Crosas, M., Dillo, I., Dumon, O., Edmunds, S., Evelo,
C. T., Finkers, R., Gonzalez-Beltran, A., Gray, A. J. G., Groth, P.,
Goble, C., Grethe, J. S., Heringa, J., Hoen, P., Hooft, R., Kuhn, T., Kok, R., Kok, J., Lusher, S. J., Martone, M. E., Mons, A., Packer, A. L., Persson, B., Rocca-Serra, P., Roos, M., van Schaik, R., Sansone, S.-A., Schultes, E., Sengstag, T., Slater, T., Strawn, G., Swertz, M. A., Thompson, M., van der Lei, J., van Mulligen, E., Velterop, J., Waagmeester, A., Wittenburg, P., Wolstencroft, K., Zhao, J., and Mons, B.: The FAIR Guiding Principles for scientific data management and stewardship, Sci. Data., 3, 160018, https://doi.org/10.1038/sdata.2016.18, 2016.
WoRMS: Editorial Board, World Register of Marine Species, http://www.marinespecies.org at VLIZ (last access: 9 October 2021), 2021.
Short summary
The Patos Lagoon estuary and adjacent marine coast (PLEA) has been a site of the Brazilian Long-Term Ecological Research (LTER) program since 1998. LTER-PLEA contributes information about the biota composition, distribution and abundance, and estuarine ecological processes. The LTER-PLEA database (8 datasets containing 6972 sampling events and records of 275 species) represents one of the most robust and longest databases of biological diversity in an estuarine coastal system of South America.
The Patos Lagoon estuary and adjacent marine coast (PLEA) has been a site of the Brazilian...
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