Articles | Volume 17, issue 6
https://doi.org/10.5194/essd-17-2447-2025
© Author(s) 2025. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/essd-17-2447-2025
© Author(s) 2025. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Fish functional groups of the North Atlantic and Arctic oceans
Murray S. A. Thompson
CORRESPONDING AUTHOR
Centre for Environment, Fisheries and Aquaculture Science (Cefas), Lowestoft Laboratory, Pakefield Road, Lowestoft, Suffolk, NR33 0HT, UK
Izaskun Preciado
Instituto Español de Oceanografía (IEO-CSIC), Centro Oceanográfico de Santander, Severiano Ballesteros 16, 39004 Santander, Spain
Federico Maioli
Department of Aquatic Resources, Institute of Marine Research, Swedish University of Agricultural Sciences, Turistgatan 5, 45330 Lysekil, Sweden
Laboratory of Marine Biology and Fisheries, Department of Biological, Geological and Environmental Sciences, University of Bologna, Viale Adriatico 1/N, 61032 Fano, Italy
Valerio Bartolino
Department of Aquatic Resources, Institute of Marine Research, Swedish University of Agricultural Sciences, Turistgatan 5, 45330 Lysekil, Sweden
Andrea Belgrano
Department of Aquatic Resources, Institute of Marine Research, Swedish University of Agricultural Sciences, Turistgatan 5, 45330 Lysekil, Sweden
Swedish Institute for the Marine Environment (SIME), University of Gothenburg, Seminariegatan 1F, 41313 Gothenburg, Sweden
Gothenburg Global Biodiversity Centre, University of Gothenburg, P.O. Box 463, 405 30 Gothenburg, Sweden
Michele Casini
Department of Aquatic Resources, Institute of Marine Research, Swedish University of Agricultural Sciences, Turistgatan 5, 45330 Lysekil, Sweden
Laboratory of Marine Biology and Fisheries, Department of Biological, Geological and Environmental Sciences, University of Bologna, Viale Adriatico 1/N, 61032 Fano, Italy
Pierre Cresson
IFREMER, Channel and North Sea Fisheries Research Unit, 150 Quai Gambetta, 62200 Boulogne sur Mer, France
Elena Eriksen
Institute of Marine Research, Bergen, Norway
Gema Hernandez-Milian
Instituto Español de Oceanografía (IEO-CSIC), Centro Oceanográfico de Vigo, Subida Radio Faro 50, 36390 Vigo, Spain
Ingibjörg G. Jónsdóttir
Marine and Freshwater Research Institute, Fornubúðum 5, 220 Hafnarfjörður, Iceland
Stefan Neuenfeldt
National Institute of Aquatic Resources, Technical University of Denmark, Lyngby, Denmark
John K. Pinnegar
Centre for Environment, Fisheries and Aquaculture Science (Cefas), Lowestoft Laboratory, Pakefield Road, Lowestoft, Suffolk, NR33 0HT, UK
Stefán Ragnarsson
Marine and Freshwater Research Institute, Fornubúðum 5, 220 Hafnarfjörður, Iceland
Sabine Schückel
BioConsult GmbH & Co KG, Auf der Muggenburg 30, 28217 Bremen, Germany
Schleswig-Holstein Agency for Coastal Defence, National Park and Marine Conservation, National Park Authority, Schlossgarten 1, 25832 Tönning, Germany
Ulrike Schückel
Schleswig-Holstein Agency for Coastal Defence, National Park and Marine Conservation, National Park Authority, Schlossgarten 1, 25832 Tönning, Germany
Brian E. Smith
Northeast Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Woods Hole, MA 02543, USA
María Ángeles Torres
Instituto Español de Oceanografía (IEO-CSIC), Centro Oceanográfico de Cádiz, Puerto Pesquero, Muelle de Levante s/n, 11006 Cadiz, Andalusia, Spain
Thomas J. Webb
Ecology and Evolutionary Biology, School of Biosciences, University of Sheffield, Sheffield, S10 2TN, UK
Christopher P. Lynam
Centre for Environment, Fisheries and Aquaculture Science (Cefas), Lowestoft Laboratory, Pakefield Road, Lowestoft, Suffolk, NR33 0HT, UK
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Ane Lopez de Gamiz-Zearra, Cecilie Hansen, Xavier Corrales, Iñaki Quincoces, Izaskun Preciado, and Eider Andonegi
EGUsphere, https://doi.org/10.5194/egusphere-2023-1368, https://doi.org/10.5194/egusphere-2023-1368, 2023
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This paper describes the development of the first calibrated end-to-end Atlantis model for the Bay of Biscay that will help us improve the comprehension of the spatial functioning of the Bay of Biscay ecosystem and help establishing management measures of human activities. Our results highlighted the importance of lower trophic levels to the pelagic system and demonstrate the importance of having accurate and precise data for biological processes.
Michele Casini, Martin Hansson, Alessandro Orio, and Karin Limburg
Biogeosciences, 18, 1321–1331, https://doi.org/10.5194/bg-18-1321-2021, https://doi.org/10.5194/bg-18-1321-2021, 2021
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In the past 20 years the condition of the eastern Baltic cod has dropped, with large implications for the fishery. Our results show that simultaneously the cod population has moved deeper while low-oxygenated waters detrimental for cod growth have become shallower. Cod have thus dwelled more in detrimental waters, explaining the drop in its condition. This study, using long-term fish and hydrological monitoring data, evidences the impact of deoxygenation on fish biology and fishing.
Knut Krämer, Soeren Ahmerkamp, Ulrike Schückel, Moritz Holtappels, and Christian Winter
Ocean Sci. Discuss., https://doi.org/10.5194/os-2018-152, https://doi.org/10.5194/os-2018-152, 2019
Preprint withdrawn
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The sandy seafloor in shelf seas is constantly overturned by waves and currents but also by a large number of animals searching for shelter and food. By taking a close look at the seafloor surface with the help of a laser scanner, this study evaluates their contribution to the overall reworking of sediment: It makes up as much as 14 % of the physically driven reworking. The activity of the organisms varies with the seasons and between different locations and can be estimated from physical values.
Related subject area
Domain: ESSD – Ocean | Subject: Biological oceanography
Satellite-derived global-ocean phytoplankton phenology indices
Hyperspectral library of submerged aquatic vegetation and benthic substrates in the Baltic Sea
A 45-year hydrological and planktonic time series in the South Bight of the North Sea
Bivalve monitoring over French coasts: multi-decadal records of carbon and nitrogen elemental and isotopic ratios as ecological indicators of global change
A comprehensive global mapping of offshore lighting
A compilation of surface inherent optical properties and phytoplankton pigment concentrations from the Atlantic Meridional Transect
A hyperspectral and multi-angular synthetic dataset for algorithm development in waters of varying trophic levels and optical complexity
Global biogeography of N2-fixing microbes: nifH amplicon database and analytics workflow
Quantitative imaging datasets of micro to mesoplankton communities and surface microplastic across the Pacific Ocean from the Tara Pacific Expedition
Microbial plankton occurrence database in the North American Arctic region: synthesis of recent diversity of potentially toxic and/or harmful algae
AIGD-PFT: the first AI-driven global daily gap-free 4 km phytoplankton functional type data product from 1998 to 2023
Early-life dispersal traits of coastal fishes: an extensive database combining observations and growth models
An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal
First release of the Pelagic Size Structure database: global datasets of marine size spectra obtained from plankton imaging devices
Metazoan zooplankton in the Bay of Biscay: a 16-year record of individual sizes and abundances obtained using the ZooScan and ZooCAM imaging systems
PANABIO: a point-referenced PAN-Arctic data collection of benthic BIOtas
The Western Channel Observatory: a century of physical, chemical and biological data compiled from pelagic and benthic habitats in the western English Channel
A global daily gap-filled chlorophyll-a dataset in open oceans during 2001–2021 from multisource information using convolutional neural networks
A new global oceanic multi-model net primary productivity data product
MAREL Carnot data and metadata from the Coriolis data center
Bio-optical properties of the cyanobacterium Nodularia spumigena
An atlas of seabed biodiversity for Aotearoa New Zealand
A synthetic optical database generated by radiative transfer simulations in support of studies in ocean optics and optical remote sensing of the global ocean
The Coastal Surveillance Through Observation of Ocean Color (COASTℓOOC) dataset
HIPPO environmental monitoring: impact of phytoplankton dynamics on water column chemistry and the sclerochronology of the king scallop (Pecten maximus) as a biogenic archive for past primary production reconstructions
AlgaeTraits: a trait database for (European) seaweeds
How to learn more about hydrological conditions and phytoplankton dynamics and diversity in the eastern English Channel and the Southern Bight of the North Sea: the Suivi Régional des Nutriments data set (1992–2021)
Deepwater red shrimp fishery in the eastern–central Mediterranean Sea: AIS-observed monthly fishing effort and frequency over 4 years
Global dataset on seagrass meadow structure, biomass and production
The Green Edge cruise: investigating the marginal ice zone processes during late spring and early summer to understand the fate of the Arctic phytoplankton bloom
A global marine particle size distribution dataset obtained with the Underwater Vision Profiler 5
The COSMUS expedition: seafloor images and acoustic bathymetric data from the PS124 expedition to the southern Weddell Sea, Antarctica
Sarah-Anne Nicholson, Thomas J. Ryan-Keogh, Sandy J. Thomalla, Nicolette Chang, and Marié E. Smith
Earth Syst. Sci. Data, 17, 1959–1975, https://doi.org/10.5194/essd-17-1959-2025, https://doi.org/10.5194/essd-17-1959-2025, 2025
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The annual widespread growth of phytoplankton blooms across the global ocean has far-reaching impacts on food security, ecosystem health, and climate. This study uses satellite-derived observations to generate long-term, sustained indices of phytoplankton phenology, capturing the timing, variability, and magnitude of blooms across the global ocean. These indices support the effective monitoring and management of marine resources and help assess the impacts of climate change on ocean ecosystems.
Ele Vahtmäe, Laura Argus, Kaire Toming, Martin Ligi, and Tiit Kutser
Earth Syst. Sci. Data, 17, 1685–1692, https://doi.org/10.5194/essd-17-1685-2025, https://doi.org/10.5194/essd-17-1685-2025, 2025
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We compiled a dataset of reflectance measurements for a variety of benthic macrophyte species and substrate types occurring naturally in the Baltic Sea. This dataset provides insights into the spectral properties of macrophyte species characteristic of the temperate geographic region. Such information is often lacking in the data format, while it is essential for developing remote sensing algorithms, classifying images, and defining requirements for future remote sensing missions.
David Devreker, Guillaume Wacquet, and Alain Lefebvre
Earth Syst. Sci. Data, 17, 1173–1189, https://doi.org/10.5194/essd-17-1173-2025, https://doi.org/10.5194/essd-17-1173-2025, 2025
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This article presents a 45-year data series (1978–2023) acquired in the South Bight of the North Sea. It provides an overview of the main statistical characteristics of time series (hydrological parameters and plankton species), including long-term trends and shift analysis. The aim of this paper is to make this valuable dataset available to help decipher the local and global influences of anthropogenic activities in a world increasingly affected by climate change.
Camilla Liénart, Alan Fournioux, Andrius Garbaras, Hugues Blanchet, Nicolas Briant, Stanislas F. Dubois, Aline Gangnery, Anne Grouhel Pellouin, Pauline Le Monier, Arnaud Lheureux, Xavier de Montaudouin, and Nicolas Savoye
Earth Syst. Sci. Data, 17, 799–815, https://doi.org/10.5194/essd-17-799-2025, https://doi.org/10.5194/essd-17-799-2025, 2025
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Bivalves such as mussels and oysters reflect the quality of the environment by filtering ambient water. We measured carbon and nitrogen chemical composition in bivalve tissues from 33 sites along French coastlines sampled since the 1980s. Thanks to such time series, this dataset allows us to track how marine species record changing climate, physical–chemical environment, and organic matter cycles and provide precious information on the coastal ecosystem response to global change.
Christopher D. Elvidge, Tilottama Ghosh, Namrata Chatterjee, Mikhail Zhizhin, Paul C. Sutton, and Morgan Bazilian
Earth Syst. Sci. Data, 17, 579–594, https://doi.org/10.5194/essd-17-579-2025, https://doi.org/10.5194/essd-17-579-2025, 2025
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We present the first comprehensive map of offshore lighting derived from low-light imaging satellite data. The empty sea provides a dark and uniform canvas upon which light detections can be aggregated for extended periods to reveal human lighting structures. The form of the structures only becomes apparent when data from 1 or more years are accumulated. Identifiable structures include fishing grounds, platforms, gas flares, anchorages, and transportation routes.
Thomas M. Jordan, Giorgio Dall'Olmo, Gavin Tilstone, Robert J. W. Brewin, Francesco Nencioli, Ruth Airs, Crystal S. Thomas, and Louise Schlüter
Earth Syst. Sci. Data, 17, 493–516, https://doi.org/10.5194/essd-17-493-2025, https://doi.org/10.5194/essd-17-493-2025, 2025
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We present a compilation of water optical properties and phytoplankton pigments from the surface of the Atlantic Ocean collected during nine cruises between 2009 and 2019. We derive continuous Chlorophyll a concentrations (a biomass proxy) from water absorption. We then illustrate geographical variations and relationships for water optical properties, Chlorophyll a, and other pigments. The dataset will be useful to researchers in ocean optics, remote sensing, ecology, and biogeochemistry.
Jaime Pitarch and Vittorio Ernesto Brando
Earth Syst. Sci. Data, 17, 435–460, https://doi.org/10.5194/essd-17-435-2025, https://doi.org/10.5194/essd-17-435-2025, 2025
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This research presents a comprehensive synthetic dataset of bio-optical properties and radiometric quantities in the optical domain, resolved for all sun-view angular combinations, from ultraviolet to visible light, that provide aid in the development of satellite algorithms, including directional problems. The dataset will significantly enhance research on light behavior in water and support future hyperspectral missions. It has been made publicly available on Zenodo.
Michael Morando, Jonathan D. Magasin, Shunyan Cheung, Matthew M. Mills, Jonathan P. Zehr, and Kendra A. Turk-Kubo
Earth Syst. Sci. Data, 17, 393–422, https://doi.org/10.5194/essd-17-393-2025, https://doi.org/10.5194/essd-17-393-2025, 2025
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Nitrogen is crucial in ocean food webs, but only some microbes can fix N2 gas into a bioavailable form. Most are known only by their nifH gene sequence. We created a software workflow for nifH data and ran it on 944 ocean samples, producing a database (DB) that captures the global diversity of N2-fixing marine microbes and the environmental factors that influence them. The workflow and DB can standardize analyses of past and future nifH datasets to enable insights into marine communities.
Zoé Mériguet, Guillaume Bourdin, Nathaniel Kristan, Laetitia Jalabert, Olivier Bun, Marc Picheral, Louis Caray–Counil, Juliette Maury, Maria-Luiza Pedrotti, Amanda Elineau, David Arturo Paz-Garcia, Lee Karp-Boss, Gabriel Gorsky, Fabien Lombard, and the Tara Pacific Consortium Coordinators team
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-507, https://doi.org/10.5194/essd-2024-507, 2024
Revised manuscript accepted for ESSD
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This study presents imaging datasets from the Tara Pacific Expedition, covering multiple plankton sizes and a wide sampling area in Pacific waters. By sampling both open ocean and island areas, these data can show how plankton size, diversity and abundance change with different environments. We also highlight the usefulness of high-speed plankton sampling when it is not possible to slow the boat during sailing, and its value in extending sampling coverage and frequency.
Nicolas Schiffrine, Fatma Dhifallah, Kaven Dionne, Michel Poulin, Sylvie Lessard, André Rochon, and Michel Gosselin
Earth Syst. Sci. Data, 16, 5681–5701, https://doi.org/10.5194/essd-16-5681-2024, https://doi.org/10.5194/essd-16-5681-2024, 2024
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Growing concern arises in the Arctic Ocean as toxic and harmful phytoplankton emerge due to climate change. The potential surge in these occurrences threatens both human health and the Arctic ecosystem. Our ongoing research yields insights into spatial patterns and biodiversity, challenging the belief that the Arctic is unsuitable for toxic and harmful algal events. This work underscores the need to comprehend and address the ecological impact of these emerging species in the Arctic environment.
Yuan Zhang, Fang Shen, Renhu Li, Mengyu Li, Zhaoxin Li, Songyu Chen, and Xuerong Sun
Earth Syst. Sci. Data, 16, 4793–4816, https://doi.org/10.5194/essd-16-4793-2024, https://doi.org/10.5194/essd-16-4793-2024, 2024
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This work describes AIGD-PFT, the first AI-driven global daily gap-free 4 km phytoplankton functional type (PFT) product from 1998 to 2023. AIGD-PFT enhances the accuracy and spatiotemporal coverage quantification of eight major PFTs (i.e. diatoms, dinoflagellates, haptophytes, pelagophytes, cryptophytes, green algae, prokaryotes, and Prochlorococcus).
Marine Di Stefano, David Nerini, Itziar Alvarez, Giandomenico Ardizzone, Patrick Astruch, Gotzon Basterretxea, Aurélie Blanfuné, Denis Bonhomme, Antonio Calò, Ignacio Catalan, Carlo Cattano, Adrien Cheminée, Romain Crec'hriou, Amalia Cuadros, Antonio Di Franco, Carlos Diaz-Gil, Tristan Estaque, Robin Faillettaz, Fabiana C. Félix-Hackradt, José Antonio Garcia-Charton, Paolo Guidetti, Loïc Guilloux, Jean-Georges Harmelin, Mireille Harmelin-Vivien, Manuel Hidalgo, Hilmar Hinz, Jean-Olivier Irisson, Gabriele La Mesa, Laurence Le Diréach, Philippe Lenfant, Enrique Macpherson, Sanja Matić-Skoko, Manon Mercader, Marco Milazzo, Tiffany Monfort, Joan Moranta, Manuel Muntoni, Matteo Murenu, Lucie Nunez, M. Pilar Olivar, Jérémy Pastor, Ángel Pérez-Ruzafa, Serge Planes, Nuria Raventos, Justine Richaume, Elodie Rouanet, Erwan Roussel, Sandrine Ruitton, Ana Sabatés, Thierry Thibaut, Daniele Ventura, Laurent Vigliola, Dario Vrdoljak, and Vincent Rossi
Earth Syst. Sci. Data, 16, 3851–3871, https://doi.org/10.5194/essd-16-3851-2024, https://doi.org/10.5194/essd-16-3851-2024, 2024
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We build a compilation of early-life dispersal traits for coastal fish species. The database contains over 110 000 entries collected from 1993 to 2021 in the western Mediterranean. All observations are harmonized to provide information on dates and locations of spawning and settlement, along with pelagic larval durations. When applicable, missing data are reconstructed from dynamic energy budget theory. Statistical analyses reveal sampling biases across taxa, space and time.
Yan Yang, Patrick Brockmann, Carolina Galdino, Uwe Schindler, and Frédéric Gazeau
Earth Syst. Sci. Data, 16, 3771–3780, https://doi.org/10.5194/essd-16-3771-2024, https://doi.org/10.5194/essd-16-3771-2024, 2024
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Studies investigating the effects of ocean acidification on marine organisms and communities have been steadily increasing. To facilitate data comparison, a data compilation hosted by the PANGAEA Data Publisher was initiated in 2008 and is updated on a regular basis. By November 2023, a total of 1501 datasets (~25 million data points) from 1554 papers have been archived. To filter and access relevant biological response data from this compilation, a user-friendly portal was launched in 2018.
Mathilde Dugenne, Marco Corrales-Ugalde, Jessica Y. Luo, Rainer Kiko, Todd D. O'Brien, Jean-Olivier Irisson, Fabien Lombard, Lars Stemmann, Charles Stock, Clarissa R. Anderson, Marcel Babin, Nagib Bhairy, Sophie Bonnet, Francois Carlotti, Astrid Cornils, E. Taylor Crockford, Patrick Daniel, Corinne Desnos, Laetitia Drago, Amanda Elineau, Alexis Fischer, Nina Grandrémy, Pierre-Luc Grondin, Lionel Guidi, Cecile Guieu, Helena Hauss, Kendra Hayashi, Jenny A. Huggett, Laetitia Jalabert, Lee Karp-Boss, Kasia M. Kenitz, Raphael M. Kudela, Magali Lescot, Claudie Marec, Andrew McDonnell, Zoe Mériguet, Barbara Niehoff, Margaux Noyon, Thelma Panaïotis, Emily Peacock, Marc Picheral, Emilie Riquier, Collin Roesler, Jean-Baptiste Romagnan, Heidi M. Sosik, Gretchen Spencer, Jan Taucher, Chloé Tilliette, and Marion Vilain
Earth Syst. Sci. Data, 16, 2971–2999, https://doi.org/10.5194/essd-16-2971-2024, https://doi.org/10.5194/essd-16-2971-2024, 2024
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Plankton and particles influence carbon cycling and energy flow in marine ecosystems. We used three types of novel plankton imaging systems to obtain size measurements from a range of plankton and particle sizes and across all major oceans. Data were compiled and cross-calibrated from many thousands of images, showing seasonal and spatial changes in particle size structure in different ocean basins. These datasets form the first release of the Pelagic Size Structure database (PSSdb).
Nina Grandremy, Paul Bourriau, Edwin Daché, Marie-Madeleine Danielou, Mathieu Doray, Christine Dupuy, Bertrand Forest, Laetitia Jalabert, Martin Huret, Sophie Le Mestre, Antoine Nowaczyk, Pierre Petitgas, Philippe Pineau, Justin Rouxel, Morgan Tardivel, and Jean-Baptiste Romagnan
Earth Syst. Sci. Data, 16, 1265–1282, https://doi.org/10.5194/essd-16-1265-2024, https://doi.org/10.5194/essd-16-1265-2024, 2024
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We present two space- and time-resolved zooplankton datasets originating from samples collected in the Bay of Biscay in spring over the 2004–2019 period and imaged with the interoperable imaging systems ZooScan and ZooCAM. These datasets are suited for long-term size-based or combined size- and taxonomy-based ecological studies of zooplankton. The set of sorted images are provided along with a set of morphological descriptors that are useful when machine learning is applied to plankton studies.
Dieter Piepenburg, Thomas Brey, Katharina Teschke, Jennifer Dannheim, Paul Kloss, Marianne Rehage, Miriam L. S. Hansen, and Casper Kraan
Earth Syst. Sci. Data, 16, 1177–1184, https://doi.org/10.5194/essd-16-1177-2024, https://doi.org/10.5194/essd-16-1177-2024, 2024
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Research on ecological footprints of climate change and human impacts in Arctic seas is still hampered by problems in accessing sound data, which is unevenly distributed among regions and faunal groups. To address this issue, we present the PAN-Arctic data collection of benthic BIOtas (PANABIO). It provides open access to valuable biodiversity information by integrating data from various sources and of various formats and offers versatile exploration tools for data filtering and mapping.
Andrea J. McEvoy, Angus Atkinson, Ruth L. Airs, Rachel Brittain, Ian Brown, Elaine S. Fileman, Helen S. Findlay, Caroline L. McNeill, Clare Ostle, Tim J. Smyth, Paul J. Somerfield, Karen Tait, Glen A. Tarran, Simon Thomas, Claire E. Widdicombe, E. Malcolm S. Woodward, Amanda Beesley, David V. P. Conway, James Fishwick, Hannah Haines, Carolyn Harris, Roger Harris, Pierre Hélaouët, David Johns, Penelope K. Lindeque, Thomas Mesher, Abigail McQuatters-Gollop, Joana Nunes, Frances Perry, Ana M. Queiros, Andrew Rees, Saskia Rühl, David Sims, Ricardo Torres, and Stephen Widdicombe
Earth Syst. Sci. Data, 15, 5701–5737, https://doi.org/10.5194/essd-15-5701-2023, https://doi.org/10.5194/essd-15-5701-2023, 2023
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Western Channel Observatory is an oceanographic time series and biodiversity reference site within 40 km of Plymouth (UK), sampled since 1903. Differing levels of reporting and formatting hamper the use of the valuable individual datasets. We provide the first summary database as monthly averages where comparisons can be made of the physical, chemical and biological data. We describe the database, illustrate its utility to examine seasonality and longer-term trends, and summarize previous work.
Zhongkun Hong, Di Long, Xingdong Li, Yiming Wang, Jianmin Zhang, Mohamed A. Hamouda, and Mohamed M. Mohamed
Earth Syst. Sci. Data, 15, 5281–5300, https://doi.org/10.5194/essd-15-5281-2023, https://doi.org/10.5194/essd-15-5281-2023, 2023
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Changes in ocean chlorophyll-a (Chl-a) concentration are related to ecosystem balance. Here, we present high-quality gap-filled Chl-a data in open oceans, reflecting the distribution and changes in global Chl-a concentration. Our findings highlight the efficacy of reconstructing missing satellite observations using convolutional neural networks. This dataset and model are valuable for research in ocean color remote sensing, offering data support and methodological references for related studies.
Thomas J. Ryan-Keogh, Sandy J. Thomalla, Nicolette Chang, and Tumelo Moalusi
Earth Syst. Sci. Data, 15, 4829–4848, https://doi.org/10.5194/essd-15-4829-2023, https://doi.org/10.5194/essd-15-4829-2023, 2023
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Oceanic productivity has been highlighted as an important environmental indicator of climate change in comparison to other existing metrics. However, the availability of these data to assess trends and trajectories is plagued with issues, such as application to only a single satellite reducing the time period for assessment. We have applied multiple algorithms to the longest ocean colour record to provide a record for assessing climate-change-driven trends.
Raed Halawi Ghosn, Émilie Poisson-Caillault, Guillaume Charria, Armel Bonnat, Michel Repecaud, Jean-Valery Facq, Loïc Quéméner, Vincent Duquesne, Camille Blondel, and Alain Lefebvre
Earth Syst. Sci. Data, 15, 4205–4218, https://doi.org/10.5194/essd-15-4205-2023, https://doi.org/10.5194/essd-15-4205-2023, 2023
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This article describes a long-term (2004–2022) dataset from an in situ instrumented station located in the eastern English Channel and belonging to the COAST-HF network (ILICO). It provides high temporal resolution (sub-hourly) oceanographic and meteorological measurements. The MAREL Carnot dataset can be used to conduct research in marine ecology, oceanography, and data science. It was utilized to characterize recurrent, rare, and extreme events in the coastal area.
Shungudzemwoyo P. Garaba, Michelle Albinus, Guido Bonthond, Sabine Flöder, Mario L. M. Miranda, Sven Rohde, Joanne Y. L. Yong, and Jochen Wollschläger
Earth Syst. Sci. Data, 15, 4163–4179, https://doi.org/10.5194/essd-15-4163-2023, https://doi.org/10.5194/essd-15-4163-2023, 2023
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These high-quality data document a harmful algal bloom dominated by Nodularia spumigena, a cyanobacterium that has been recurring in waters around the world, using advanced water observation technologies. We also showcase the benefits of experiments of opportunity and the issues with obtaining synoptic spatio-temporal data for monitoring water quality. The dataset can be leveraged to gain more knowledge on related blooms, develop detection algorithms and optimize future monitoring efforts.
Fabrice Stephenson, Tom Brough, Drew Lohrer, Daniel Leduc, Shane Geange, Owen Anderson, David Bowden, Malcolm R. Clark, Niki Davey, Enrique Pardo, Dennis P. Gordon, Brittany Finucci, Michelle Kelly, Diana Macpherson, Lisa McCartain, Sadie Mills, Kate Neill, Wendy Nelson, Rachael Peart, Matthew H. Pinkerton, Geoffrey B. Read, Jodie Robertson, Ashley Rowden, Kareen Schnabel, Andrew Stewart, Carl Struthers, Leigh Tait, Di Tracey, Shaun Weston, and Carolyn Lundquist
Earth Syst. Sci. Data, 15, 3931–3939, https://doi.org/10.5194/essd-15-3931-2023, https://doi.org/10.5194/essd-15-3931-2023, 2023
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Understanding the distribution of species that live at the seafloor is critical to the management of the marine environment but is lacking in many areas. Here, we showcase an atlas of seafloor biodiversity that describes the distribution of approximately 600 organisms throughout New Zealand’s vast marine realm. Each layer in the open-access atlas has been evaluated by leading experts and provides a key resource for the sustainable use of New Zealand's marine environment.
Hubert Loisel, Daniel Schaffer Ferreira Jorge, Rick A. Reynolds, and Dariusz Stramski
Earth Syst. Sci. Data, 15, 3711–3731, https://doi.org/10.5194/essd-15-3711-2023, https://doi.org/10.5194/essd-15-3711-2023, 2023
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Studies of light fields in aquatic environments require data from radiative transfer simulations that are free of measurement errors. In contrast to previously published synthetic optical databases, the present database was created by simulations covering a broad range of seawater optical properties that exhibit probability distributions consistent with a global ocean dominated by open-ocean pelagic environments. This database is intended to support ocean color science and applications.
Philippe Massicotte, Marcel Babin, Frank Fell, Vincent Fournier-Sicre, and David Doxaran
Earth Syst. Sci. Data, 15, 3529–3545, https://doi.org/10.5194/essd-15-3529-2023, https://doi.org/10.5194/essd-15-3529-2023, 2023
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The COASTlOOC oceanographic expeditions in 1997 and 1998 studied the relationship between seawater properties and biology and chemistry across the European coasts. The team collected data from 379 stations using ships and helicopters to support the development of ocean color remote-sensing algorithms. This unique and consistent dataset is still used today by researchers.
Valentin Siebert, Brivaëla Moriceau, Lukas Fröhlich, Bernd R. Schöne, Erwan Amice, Beatriz Beker, Kevin Bihannic, Isabelle Bihannic, Gaspard Delebecq, Jérémy Devesa, Morgane Gallinari, Yoan Germain, Émilie Grossteffan, Klaus Peter Jochum, Thierry Le Bec, Manon Le Goff, Céline Liorzou, Aude Leynaert, Claudie Marec, Marc Picheral, Peggy Rimmelin-Maury, Marie-Laure Rouget, Matthieu Waeles, and Julien Thébault
Earth Syst. Sci. Data, 15, 3263–3281, https://doi.org/10.5194/essd-15-3263-2023, https://doi.org/10.5194/essd-15-3263-2023, 2023
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This article presents an overview of the results of biological, chemical and physical parameters measured at high temporal resolution (sampling once and twice per week) during environmental monitoring that took place in 2021 in the Bay of Brest. We strongly believe that this dataset could be very useful for other scientists performing sclerochronological investigations, studying biogeochemical cycles or conducting various ecological research projects.
Sofie Vranken, Marine Robuchon, Stefanie Dekeyzer, Ignacio Bárbara, Inka Bartsch, Aurélie Blanfuné, Charles-François Boudouresque, Wim Decock, Christophe Destombe, Bruno de Reviers, Pilar Díaz-Tapia, Anne Herbst, Romain Julliard, Rolf Karez, Priit Kersen, Stacy A. Krueger-Hadfield, Ralph Kuhlenkamp, Akira F. Peters, Viviana Peña, Cristina Piñeiro-Corbeira, Fabio Rindi, Florence Rousseau, Jan Rueness, Hendrik Schubert, Kjersti Sjøtun, Marta Sansón, Dan Smale, Thierry Thibaut, Myriam Valero, Leen Vandepitte, Bart Vanhoorne, Alba Vergés, Marc Verlaque, Christophe Vieira, Line Le Gall, Frederik Leliaert, and Olivier De Clerck
Earth Syst. Sci. Data, 15, 2711–2754, https://doi.org/10.5194/essd-15-2711-2023, https://doi.org/10.5194/essd-15-2711-2023, 2023
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We present AlgaeTraits, a high-quality seaweed trait database. The data are structured within the framework of WoRMS and are supported by an expert editor community. With 45 175 trait records for 21 prioritised biological and ecological traits, and a taxonomic coverage of 1 745 European species, AlgaeTraits significantly advances previous efforts to provide standardised seaweed trait data. AlgaeTraits will serve as a foundation for future research on diversity and evolution of seaweeds.
Alain Lefebvre and David Devreker
Earth Syst. Sci. Data, 15, 1077–1092, https://doi.org/10.5194/essd-15-1077-2023, https://doi.org/10.5194/essd-15-1077-2023, 2023
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The Suivi Regional des Nutriments (SRN) data set includes long-term time series on marine phytoplankton and physicochemical measures in the eastern English Channel and the Southern Bight of the North Sea. These data sets should be useful for comparing contrasted coastal marine ecosystems to further knowledge about the direct and indirect effects of human pressures and environmental changes on ecosystem structure and function, including eutrophication and harmful algal bloom issues.
Jacopo Pulcinella, Enrico Nicola Armelloni, Carmen Ferrà, Giuseppe Scarcella, and Anna Nora Tassetti
Earth Syst. Sci. Data, 15, 809–820, https://doi.org/10.5194/essd-15-809-2023, https://doi.org/10.5194/essd-15-809-2023, 2023
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Deep-sea fishery in the Mediterranean Sea was historically driven by the commercial profitability of deepwater red shrimps. Understanding spatiotemporal dynamics of fishing is key to comprehensively evaluate the status of these resources and prevent stock collapse. The observed monthly fishing effort and frequency dataset released by the automatic identification system (AIS) may help researchers as well as those involved in fishery management and in the update of existing management plans.
Simone Strydom, Roisin McCallum, Anna Lafratta, Chanelle L. Webster, Caitlyn M. O'Dea, Nicole E. Said, Natasha Dunham, Karina Inostroza, Cristian Salinas, Samuel Billinghurst, Charlie M. Phelps, Connor Campbell, Connor Gorham, Rachele Bernasconi, Anna M. Frouws, Axel Werner, Federico Vitelli, Viena Puigcorbé, Alexandra D'Cruz, Kathryn M. McMahon, Jack Robinson, Megan J. Huggett, Sian McNamara, Glenn A. Hyndes, and Oscar Serrano
Earth Syst. Sci. Data, 15, 511–519, https://doi.org/10.5194/essd-15-511-2023, https://doi.org/10.5194/essd-15-511-2023, 2023
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Seagrasses are important underwater plants that provide valuable ecosystem services to humans, including mitigating climate change. Understanding the natural history of seagrass meadows across different types of environments is crucial to conserving seagrasses in the global ocean. This dataset contains data extracted from peer-reviewed publications and highlights which seagrasses have been studied and in which locations and is useful for pointing out which need further investigation.
Flavienne Bruyant, Rémi Amiraux, Marie-Pier Amyot, Philippe Archambault, Lise Artigue, Lucas Barbedo de Freitas, Guislain Bécu, Simon Bélanger, Pascaline Bourgain, Annick Bricaud, Etienne Brouard, Camille Brunet, Tonya Burgers, Danielle Caleb, Katrine Chalut, Hervé Claustre, Véronique Cornet-Barthaux, Pierre Coupel, Marine Cusa, Fanny Cusset, Laeticia Dadaglio, Marty Davelaar, Gabrièle Deslongchamps, Céline Dimier, Julie Dinasquet, Dany Dumont, Brent Else, Igor Eulaers, Joannie Ferland, Gabrielle Filteau, Marie-Hélène Forget, Jérome Fort, Louis Fortier, Martí Galí, Morgane Gallinari, Svend-Erik Garbus, Nicole Garcia, Catherine Gérikas Ribeiro, Colline Gombault, Priscilla Gourvil, Clémence Goyens, Cindy Grant, Pierre-Luc Grondin, Pascal Guillot, Sandrine Hillion, Rachel Hussherr, Fabien Joux, Hannah Joy-Warren, Gabriel Joyal, David Kieber, Augustin Lafond, José Lagunas, Patrick Lajeunesse, Catherine Lalande, Jade Larivière, Florence Le Gall, Karine Leblanc, Mathieu Leblanc, Justine Legras, Keith Lévesque, Kate-M. Lewis, Edouard Leymarie, Aude Leynaert, Thomas Linkowski, Martine Lizotte, Adriana Lopes dos Santos, Claudie Marec, Dominique Marie, Guillaume Massé, Philippe Massicotte, Atsushi Matsuoka, Lisa A. Miller, Sharif Mirshak, Nathalie Morata, Brivaela Moriceau, Philippe-Israël Morin, Simon Morisset, Anders Mosbech, Alfonso Mucci, Gabrielle Nadaï, Christian Nozais, Ingrid Obernosterer, Thimoté Paire, Christos Panagiotopoulos, Marie Parenteau, Noémie Pelletier, Marc Picheral, Bernard Quéguiner, Patrick Raimbault, Joséphine Ras, Eric Rehm, Llúcia Ribot Lacosta, Jean-François Rontani, Blanche Saint-Béat, Julie Sansoulet, Noé Sardet, Catherine Schmechtig, Antoine Sciandra, Richard Sempéré, Caroline Sévigny, Jordan Toullec, Margot Tragin, Jean-Éric Tremblay, Annie-Pier Trottier, Daniel Vaulot, Anda Vladoiu, Lei Xue, Gustavo Yunda-Guarin, and Marcel Babin
Earth Syst. Sci. Data, 14, 4607–4642, https://doi.org/10.5194/essd-14-4607-2022, https://doi.org/10.5194/essd-14-4607-2022, 2022
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This paper presents a dataset acquired during a research cruise held in Baffin Bay in 2016. We observed that the disappearance of sea ice in the Arctic Ocean increases both the length and spatial extent of the phytoplankton growth season. In the future, this will impact the food webs on which the local populations depend for their food supply and fisheries. This dataset will provide insight into quantifying these impacts and help the decision-making process for policymakers.
Rainer Kiko, Marc Picheral, David Antoine, Marcel Babin, Léo Berline, Tristan Biard, Emmanuel Boss, Peter Brandt, Francois Carlotti, Svenja Christiansen, Laurent Coppola, Leandro de la Cruz, Emilie Diamond-Riquier, Xavier Durrieu de Madron, Amanda Elineau, Gabriel Gorsky, Lionel Guidi, Helena Hauss, Jean-Olivier Irisson, Lee Karp-Boss, Johannes Karstensen, Dong-gyun Kim, Rachel M. Lekanoff, Fabien Lombard, Rubens M. Lopes, Claudie Marec, Andrew M. P. McDonnell, Daniela Niemeyer, Margaux Noyon, Stephanie H. O'Daly, Mark D. Ohman, Jessica L. Pretty, Andreas Rogge, Sarah Searson, Masashi Shibata, Yuji Tanaka, Toste Tanhua, Jan Taucher, Emilia Trudnowska, Jessica S. Turner, Anya Waite, and Lars Stemmann
Earth Syst. Sci. Data, 14, 4315–4337, https://doi.org/10.5194/essd-14-4315-2022, https://doi.org/10.5194/essd-14-4315-2022, 2022
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The term
marine particlescomprises detrital aggregates; fecal pellets; bacterioplankton, phytoplankton and zooplankton; and even fish. Here, we present a global dataset that contains 8805 vertical particle size distribution profiles obtained with Underwater Vision Profiler 5 (UVP5) camera systems. These data are valuable to the scientific community, as they can be used to constrain important biogeochemical processes in the ocean, such as the flux of carbon to the deep sea.
Autun Purser, Laura Hehemann, Lilian Boehringer, Ellen Werner, Santiago E. A. Pineda-Metz, Lucie Vignes, Axel Nordhausen, Moritz Holtappels, and Frank Wenzhoefer
Earth Syst. Sci. Data, 14, 3635–3648, https://doi.org/10.5194/essd-14-3635-2022, https://doi.org/10.5194/essd-14-3635-2022, 2022
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Within this paper we present the seafloor images, maps and acoustic camera data collected by a towed underwater research platform deployed in 20 locations across the eastern Weddell Sea, Antarctica, during the PS124 COSMUS expedition with the research icebreaker RV Polarstern in 2021. The 20 deployments highlight the great variability in seafloor structure and faunal communities present. Of key interest was the discovery of the largest fish nesting colony discovered globally to date.
Cited articles
Anderson, M. J.: Distance-Based Tests for Homogeneity of Multivariate Dispersions, Biometrics, 62, 245–253, https://doi.org/10.1111/j.1541-0420.2005.00440.x, 2006.
Arroyo, N. L., Preciado, I., López-López, L., Muñoz, I., and Punzón, A.: Trophic mechanisms underlying bentho-demersal community recovery in the north-east Atlantic, J. Appl. Ecol., 54, 1957–1967, https://doi.org/10.1111/1365-2664.12879, 2017.
Barnes, C., Maxwell, D., Reuman, D. C., and Jennings, S.: Global patterns in predator-prey size relationships reveal size dependency of trophic transfer efficiency, Ecology, 91, 222–232, https://doi.org/10.1890/08-2061.1, 2010.
Boschetti, S., Piroddi, C., Druon, J., and Palialexis, A.: Marine Strategy Framework Directive – Review and analysis of Member States' 2018 reports – Descriptor 4: Food webs, European Union, https://doi.org/10.2760/32522, 2021.
Brooks, M. E., Kristensen, K., Van Benthem, K. J., Magnusson, A., Berg, C. W., Nielsen, A., Skaug, H. J., Machler, M., and Bolker, B. M.: glmmTMB balances speed and flexibility among packages for zero-inflated generalized linear mixed modeling, R J., 9, 378–400, 2017.
Brose, U., Jonsson, T., Berlow, E. L., Warren, P., Banasek-Richter, C., Bersier, L.-F., Blanchard, J. L., Brey, T., Carpenter, S. R., Blandenier, M.-F. C., Cushing, L., Dawah, H. A., Dell, T., Edwards, F., Harper-Smith, S., Jacob, U., Ledger, M. E., Martinez, N. D., Memmott, J., Mintenbeck, K., Pinnegar, J. K., Rall, B. C., Rayner, T. S., Reuman, D. C., Ruess, L., Ulrich, W., Williams, R. J., Woodward, G., and Cohen, J. E.: CONSUMER–RESOURCE BODY-SIZE RELATIONSHIPS IN NATURAL FOOD WEBS, Ecology, 87, 2411–2417, https://doi.org/10.1890/0012-9658(2006)87[2411:CBRINF]2.0.CO;2, 2006.
Brose, U., Archambault, P., Barnes, A. D., Bersier, L. F., Boy, T., Canning-Clode, J., Conti, E., Dias, M., Digel, C., Dissanayake, A., Flores, A. A. V., Fussmann, K., Gauzens, B., Gray, C., Häussler, J., Hirt, M. R., Jacob, U., Jochum, M., Kéfi, S., McLaughlin, O., MacPherson, M. M., Latz, E., Layer-Dobra, K., Legagneux, P., Li, Y., Madeira, C., Martinez, N. D., Mendonça, V., Mulder, C., Navarrete, S. A., O'Gorman, E. J., Ott, D., Paula, J., Perkins, D., Piechnik, D., Pokrovsky, I., Raffaelli, D., Rall, B. C., Rosenbaum, B., Ryser, R., Silva, A., Sohlström, E. H., Sokolova, N., Thompson, M. S. A., Thompson, R. M., Vermandele, F., Vinagre, C., Wang, S., Wefer, J. M., Williams, R. J., Wieters, E., Woodward, G., and Iles, A. C.: Predator traits determine food-web architecture across ecosystems, Nat. Ecol. Evol., 3, 919–927, https://doi.org/10.1038/s41559-019-0899-x, 2019.
Cachera, M., Ernande, B., Villanueva, M. C., and Lefebvre, S.: Individual diet variation in a marine fish assemblage: Optimal Foraging Theory, Niche Variation Hypothesis and functional identity, J. Sea Res., 120, 60–71, https://doi.org/10.1016/j.seares.2016.08.004, 2017.
Cardinale, B. J., Duffy, J. E., Gonzalez, A., Hooper, D. U., Perrings, C., Venail, P., Narwani, A., MacE, G. M., Tilman, D., Wardle, D. A., Kinzig, A. P., Daily, G. C., Loreau, M., Grace, J. B., Larigauderie, A., Srivastava, D. S., and Naeem, S.: Biodiversity loss and its impact on humanity, Nature, 486, 59–67, https://doi.org/10.1038/nature11148, 2012.
Chamberlain, S.: worrms: World Register of Marine Species (WoRMS) Client, https://CRAN.R-project.org/package=worrms (last access: 12 July 2022), 2019.
Chamberlain, S., Szoecs, E., Foster, Z., Arendsee, Z., Boettiger, C., Ram, K., Bartomeus, I., Baumgartner, J., O'Donnell, J., and Oksanen, J.: taxize: Taxonomic information from around the web, GitHub [data set], https://github.com/ropensci/taxize (last access: 12 July 2022), 2020.
Daan, N.: Data base report of the stomach sampling project 1981, ICES Cooperative Research Report, Vol. 164, ICES, 150 pp., https://doi.org/10.17895/ices.pub.4533, 1981.
Daufresne, M., Lengfellner, K., and Sommer, U.: Global warming benefits the small in aquatic ecosystems, P. Natl. Acad. Sci. USA, 106, 12788–12793, https://doi.org/10.1073/pnas.0902080106, 2009.
du Pontavice, H., Gascuel, D., Reygondeau, G., Maureaud, A., and Cheung, W. W. L.: Climate change undermines the global functioning of marine food webs, Glob. Change Biol., 26, 1306–1318, https://doi.org/10.1111/gcb.14944, 2020.
Garrison, L. P. and Link, J. S.: Dietary guild structure of the fish community in the Northeast United States continental shelf ecosystem, Mar. Ecol. Prog. Ser., 202, 231–240, https://doi.org/10.3354/meps202231, 2000a.
Garrison, L. P. and Link, J. S.: Fishing effects on spatial distribution and trophic guild structure of the fish community in the Georges Bank region, ICES J. Mar. Sci., 57, 723–730, https://doi.org/10.1006/jmsc.2000.0713, 2000b.
Gray, C., Figueroa, D. H., Hudson, L. N., Ma, A., Perkins, D., and Woodward, G.: Joining the dots: An automated method for constructing food webs from compendia of published interactions, Food Webs, 5, 11–20, https://doi.org/10.1016/j.fooweb.2015.09.001, 2015.
Hartig, F.: DHARMa: Residual Diagnostics for Hierarchical (Multi-Level/Mixed) Regression Models, https://CRAN.R-project.org/package=DHARMa, (last access: 25 March 2024), 2022.
Hernvann, P.-Y., Gascuel, D., Kopp, D., Robert, M., and Rivot, E.: EcoDiet: A hierarchical Bayesian model to combine stomach, biotracer, and literature data into diet matrix estimation, Ecol. Appl., 32, e2521, https://doi.org/10.1002/eap.2521, 2022.
Hicks, C. C., Cohen, P. J., Graham, N. A. J., Nash, K. L., Allison, E. H., D'Lima, C., Mills, D. J., Roscher, M., Thilsted, S. H., Thorne-Lyman, A. L., and MacNeil, M. A.: Harnessing global fisheries to tackle micronutrient deficiencies, Nature, 574, 95–98, https://doi.org/10.1038/s41586-019-1592-6, 2019.
Hijmans, R. J., Williams, E., and Vennes, C.: geosphere: spherical trigonometry, R package geosphere version 1.5-10.2019, https://CRAN.R-project.org/package=geosphere (last access: 2 February 2025), 2021.
Hothorn, T., Bretz, F., and Westfall, P.: Simultaneous Inference in General Parametric Models, Biometr. J., 50, 346–363, https://doi.org/10.1002/bimj.200810425, 2008.
ICES: Database report of the stomach sampling project, 1991, ICES Cooperative Research Report, Vol. 219, 1426 pp., https://doi.org/10.17895/ices.pub.4626, 1997.
ICES: Report of the Working Group on Ecosystem Effects of Fishing Activities (WGECO), 12–19 April 2018, San Pedro del Pinatar, Spain, ICES CM 2018/ACOM:27, 69 pp., 2018.
Jakubavičiute, E., Bergström, U., Eklöf, J. S., Haenel, Q., and Bourlat, S. J.: DNA metabarcoding reveals diverse diet of the three-spined stickleback in a coastal ecosystem, PLOS ONE, 12, e0186929, https://doi.org/10.1371/journal.pone.0186929, 2017.
Katara, I., Peden, W. J., Bannister, H., Ribeiro, J., Fronkova, L., Scougal, C., Martinez, R., Downie, A. L., and Sweeting, C. J.: Conservation hotspots for fish habitats: A case study from English and Welsh waters, Reg. Stud. Mar. Sci., 44, 101745, https://doi.org/10.1016/j.rsma.2021.101745, 2021.
Kleisner, K. M., Fogarty, M. J., McGee, S., Barnett, A., Fratantoni, P., Greene, J., Hare, J. A., Lucey, S. M., McGuire, C., Odell, J., Saba, V. S., Smith, L., Weaver, K. J., and Pinsky, M. L.: The Effects of Sub-Regional Climate Velocity on the Distribution and Spatial Extent of Marine Species Assemblages, PLOS ONE, 11, e0149220, https://doi.org/10.1371/journal.pone.0149220, 2016.
Kortsch, S., Primicerio, R., Fossheim, M., Dolgov, A. V., and Aschan, M.: Climate change alters the structure of arctic marine food webs due to poleward shifts of boreal generalists, P. Roy. Soc. B-Biol. Sci., 282, 20151546, https://doi.org/10.1098/rspb.2015.1546, 2015.
Kotwicki, S., Ressler, P. H., Ianelli, J. N., Punt, A. E., and Horne, J. K.: Combining data from bottom-trawl and acoustic-trawl surveys to estimate an index of abundance for semipelagic species, Can. J. Fish. Aquat. Sci., 75, 60–71, https://doi.org/10.1139/cjfas-2016-0362, 2018.
Legendre, P.: Model II regression user's guide, R edition, R Vignette, 14 pp., CRAN, https://cran.r-project.org/web/packages/lmodel2/vignettes/mod2user.pdf (last access: 2 June 2023), 1998.
Link, J. S.: A General Model of Selectivity for Fish Feeding: A Rank Proportion Algorithm, T. Am. Fish. Soc., 133, 655–673, https://doi.org/10.1577/t02-142.1, 2004.
Link, J. S., Fulton, E. A., and Gamble, R. J.: The northeast US application of ATLANTIS: A full system model exploring marine ecosystem dynamics in a living marine resource management context, Prog. Oceanogr., 87, 214–234, https://doi.org/10.1016/j.pocean.2010.09.020, 2010.
Lotze, H. K., Tittensor, D. P., Bryndum-Buchholz, A., Eddy, T. D., Cheung, W. W. L., Galbraith, E. D., Barange, M., Barrier, N., Bianchi, D., Blanchard, J. L., Bopp, L., Büchner, M., Bulman, C. M., Carozza, D. A., Christensen, V., Coll, M., Dunne, J. P., Fulton, E. A., Jennings, S., Jones, M. C., Mackinson, S., Maury, O., Niiranen, S., Oliveros-Ramos, R., Roy, T., Fernandes, J. A., Schewe, J., Shin, Y.-J., Silva, T. A. M., Steenbeek, J., Stock, C. A., Verley, P., Volkholz, J., Walker, N. D., and Worm, B.: Global ensemble projections reveal trophic amplification of ocean biomass declines with climate change, P. Natl. Acad. Sci. USA, 116, 12907–12912, https://doi.org/10.1073/pnas.1900194116, 2019.
Lynam, C. P. and Piet, G.: Pilot Assessment of Mean Maximum Length of Fish, in: OSPAR, 2023: The 2023 Quality Status Report for the North-East Atlantic, OSPAR Commission, London, https://oap.ospar.org/en/ospar-assessments/quality-status-reports/qsr-2023/indicator-assessments/mean-max-fish-pilot/ (last access: 27 May 2025), 2022.
Lynam, C. P. and Ribeiro, J.: A data product derived from Northeast Atlantic groundfish data from scientific trawl surveys 1983–2020, Lowestoft, UK, https://doi.org/10.14466/CefasDataHub.126, 2022.
Lynam, C. P., Piet, G., and Volwater, J.: Size Composition in Fish Communities, in: OSPAR, 2023: The 2023 Quality Status Report for the Northeast Atlantic, OSPAR Commission, London, https://oap.ospar.org/en/ospar-assessments/quality-status-reports/qsr-2023/indicator-assessments/size-composition-fish-communities (last access: 27 May 2025), 2022.
Nakazawa, T., Ushio, M., and Kondoh, M.: Scale Dependence of Predator-Prey Mass Ratio. Determinants and Applications, 1st edn., Elsevier Ltd., https://doi.org/10.1016/B978-0-12-386475-8.00007-1, 269–302 pp., 2011.
Nnanatu, C. C., Thompson, M. S. A., Spence, M. A., Couce, E., van der Kooij, J., and Lynam, C. P.: Bayesian hierarchical space-time models to improve multispecies assessment by combining observations from disparate fish surveys, arXiv [preprint], https://doi.org/10.48550/arXiv.2012.02196, 2020.
Otto, S. B., Rall, B. C., and Brose, U.: Allometric degree distributions facilitate food-web stability, Nature, 450, 1226–1229, https://doi.org/10.1038/nature06359, 2007.
Pecuchet, L., Blanchet, M. A., Frainer, A., Husson, B., Jørgensen, L. L., Kortsch, S., and Primicerio, R.: Novel feeding interactions amplify the impact of species redistribution on an Arctic food web, Glob. Change Biol., 26, 4894–4906, https://doi.org/10.1111/gcb.15196, 2020.
Petchey, O. L., Beckerman, A. P., Riede, J. O., and Warren, P. H.: Size, foraging, and food web structure, P. Natl. Acad. Sci. USA, 105, 4191–4196, https://doi.org/10.1073/pnas.0710672105, 2008.
Pethybridge, H. R., Choy, C. A., Polovina, J. J., and Fulton, E. A.: Improving Marine Ecosystem Models with Biochemical Tracers, Annu. Rev. Mar. Sci., 10, 199–228, https://doi.org/10.1146/annurev-marine-121916-063256, 2018.
Pinnegar, J. K.: DAPSTOM – An Integrated Database & Portal for Fish Stomach Records, Version 5.5, Centre for Environment, Fisheries & Aquaculture Science, Lowestoft, UK, 34 pp., 2019.
Pomeranz, J. P. F., Thompson, R. M., Poisot, T., and Harding, J. S.: Inferring predator–prey interactions in food webs, Methods Ecol. Evol., 10, 356–367, https://doi.org/10.1111/2041-210X.13125, 2019.
Preciado, I., López-López, L., Rabanal, I., Ortiz, J. J., Torres, M. Á., Muñoz, I., Iglesias, D., García Rebollo, J. M., Mendes, H., Le Loc'h, F., Garrido, S., Metaireau, H., and Serre, S.: Changes in average trophic level of marine consumers, in: OSPAR, 2023: The 2023 Quality Status Report for the North-East Atlantic, OSPAR Commission, London, 2023.
R Core Team: R: A language and environment for statistical computing, R Foundation for Statistical Computing, Vienna, Austria, https://www.R-project.org (last access: 28 May 2025), 2020.
Reum, J. C. P., Holsman, K. K., Aydin, K. Y., Blanchard, J. L., and Jennings, S.: Energetically relevant predator–prey body mass ratios and their relationship with predator body size, Ecol. Evol., 9, 201–211, https://doi.org/10.1002/ece3.4715, 2019.
Rombouts, I., Beaugrand, G., Fizzala, X., Gaill, F., Greenstreet, S. P. R., Lamare, S., Le Loc'H, F., McQuatters-Gollop, A., Mialet, B., Niquil, N., Percelay, J., Renaud, F., Rossberg, A. G., and Féral, J. P.: Food web indicators under the Marine Strategy Framework Directive: From complexity to simplicity?, Ecol. Indic., 29, 246–254, https://doi.org/10.1016/j.ecolind.2012.12.021, 2013.
Rooney, N., McCann, K., Gellner, G., and Moore, J. C.: Structural asymmetry and the stability of diverse food webs, Nature, 442, 265–269, https://doi.org/10.1038/nature04887, 2006.
Rossberg, A. G., Uusitalo, L., Berg, T., Zaiko, A., Chenuil, A., Uyarra, M. C., Borja, A., and Lynam, C. P.: Quantitative criteria for choosing targets and indicators for sustainable use of ecosystems, Ecol. Indic., 72, 215–224, https://doi.org/10.1016/j.ecolind.2016.08.005, 2017.
Samhouri, J. F., Levin, P. S., and Ainsworth, C. H.: Identifying Thresholds for Ecosystem-Based Management, PLoS One, 5, e8907, https://doi.org/10.1371/journal.pone.0008907, 2010.
Schneider, F. D., Scheu, S., and Brose, U.: Body mass constraints on feeding rates determine the consequences of predator loss, Ecol. Lett., 15, 436–443, https://doi.org/10.1111/j.1461-0248.2012.01750.x, 2012.
Scott, F., Blanchard, J. L., and Andersen, K. H.: mizer: an R package for multispecies, trait-based and community size spectrum ecological modelling, Methods Ecol. Evol., 5, 1121–1125, https://doi.org/10.1111/2041-210X.12256, 2014.
Smith, B. E. and Link, J. S. J.: The Trophic Dynamics of 50 Finfish and 2 Squid Species on the Northeast US Continental Shelf, U. S. Dep. Commer. NOAA Technical Memorandum, NMFS-NE-21, NOAA, 1–29, https://repository.library.noaa.gov/view/noaa/3755 (last access: 27 May 2025), 2010.
Spence, M. A., Griffiths, C. A., Waggitt, J. J., Bannister, H. J., Thorpe, R. B., Rossberg, A. G., and Lynam, C. P.: Sustainable fishing can lead to improvements in marine ecosystem status: an ensemble-model forecast of the North Sea ecosystem, Mar. Ecol. Prog. Ser., 680, 207–221, 2021.
Tam, J. C., Link, J. S., Rossberg, A. G., Rogers, S. I., Levin, P. S., Rochet, M. J., Bundy, A., Belgrano, A., Libralato, S., Tomczak, M., Van De Wolfshaar, K., Pranovi, F., Gorokhova, E., Large, S. I., Niquil, N., Greenstreet, S. P. R., Druon, J. N., Lesutiene, J., Johansen, M., Preciado, I., Patricio, J., Palialexis, A., Tett, P., Johansen, G. O., Houle, J., and Rindorf, A.: Towards ecosystem-based management: Identifying operational food-web indicators for marine ecosystems, ICES J. Mar. Sci., 74, 2040–2052, https://doi.org/10.1093/icesjms/fsw230, 2017.
Temming, A. and Herrmann, J. P.: Gastric evacuation in cod. Prey-specific evacuation rates for use in North Sea, Baltic Sea and Barents Sea multi-species models, Fish. Res., 63, 21–41, https://doi.org/10.1016/s0165-7836(03)00041-9, 2003.
Thompson, M. S. A., Pontalier, H., Spence, M. A., Pinnegar, J. K., Greenstreet, S. P. R., Moriarty, M., Hélaouët, P., and Lynam, C. P.: A feeding guild indicator to assess environmental change impacts on marine ecosystem structure and functioning, J. Appl. Ecol., 57, 1769–1781, https://doi.org/10.1111/1365-2664.13662, 2020.
Thompson, M. S. A., Couce, E., Schratzberger, M., and Lynam, C. P.: Climate change affects the distribution of diversity across marine food webs, Glob. Change Biol., 29, 6606–6619, https://doi.org/10.1111/gcb.16881, 2023a.
Thompson, M. S. A., Lynam, C. P., and Preciado, I.: Pilot Assessment of Feeding Guilds, in: OSPAR, 2023: The 2023 Quality Status Report for the Northeast Atlantic, OAP, London, https://oap.ospar.org/en/ospar-assessments/quality-status-reports/qsr-2023/indicator-assessments/feeding-guild-pilot-assessment (last access: 27 May 2025), 2023b.
Thompson, M. S. A., Preciado, I., Maioli, F., Bartolino, V., Belgrano, A., Casini, M., Cresson, P., Eriksen, E., Hernandez-Milian, G., Jónsdóttir, I. G., Neuenfeldt, S., Pinnegar, J. K., Ragnarsson, S., Schückel, S., Schückel, U., Smith, B. E., Torres, M. Á., Webb, T. J., and Lynam, C. P.: Modelled and observed fish feeding traits for the North Atlantic and Arctic Oceans (1836-2020) and population estimates of fish with different feeding traits from Northeast Atlantic scientific trawl surveys (1997–2020), Cefas, UK, https://doi.org/10.14466/CefasDataHub.149, 2024.
Timmerman, C.-A., Marchal, P., Denamiel, M., Couvreur, C., and Cresson, P.: Seasonal and ontogenetic variation of whiting diet in the Eastern English Channel and the Southern North Sea, PLOS ONE, 15, e0239436, https://doi.org/10.1371/journal.pone.0239436, 2020.
Torres, M. Á., Coll, M., Heymans, J. J., Christensen, V., and Sobrino, I.: Food-web structure of and fishing impacts on the Gulf of Cadiz ecosystem (South-western Spain), Ecol Model., 265, 26–44, https://doi.org/10.1016/j.ecolmodel.2013.05.019, 2013.
Travers-Trolet, M.: CGFS2017 cruise, RV Thalassa, Boulogne-sur-Mer, Ifremer, France, https://doi.org/10.17600/17002200, 2017.
Verin, Y.: IBTS 2018 cruise, RV Thalassa, Boulogne-sur-Mer, Ifremer, France, https://doi.org/10.17600/18000003, 2018.
Walmsley, S., Weiss, A., Claussen, U., and Connor, D.: Guidance for Assessments Under Article 8 of the Marine Strategy Framework Directive, Integration of assessment results. A report produced for the European Commission, DG Environment, https://circabc.europa.eu/sd/a/c04fa5be-804c-481f-a04e-036ffd6d85dc/GES_16-2016-02_Guidance_MSFDArt8.docx (last access: 27 May 2025), 2016.
Wang, S. and Brose, U.: Biodiversity and ecosystem functioning in food webs: the vertical diversity hypothesis, Ecol. Lett., 21, 9–20, https://doi.org/10.1111/ele.12865, 2018.
Webb, T. J. and Vanhoorne, B.: Linking dimensions of data on global marine animal diversity: Dimensions of global marine diversity, Philos. T. R. Soc. B, 375, 20190445, https://doi.org/10.1098/rstb.2019.0445, 2020.
Woodward, G., Ebenman, B., Emmerson, M., Montoya, J. M., Olesen, J. M., Valido, A., and Warren, P. H.: Body size in ecological networks, Trends Ecol. Evol., 20, 402–409, https://doi.org/10.1016/j.tree.2005.04.005, 2005.
Worm, B., Barbier, E. B., Beaumont, N., Duffy, J. E., Folke, C., Halpern, B. S., Jackson, J. B. C., Lotze, H. K., Micheli, F., Palumbi, S. R., Sala, E., Selkoe, K. A., Stachowicz, J. J., and Watson, R.: Impacts of biodiversity loss on ocean ecosystem services, Science (1979), 314, 787–790, https://doi.org/10.1126/science.1132294, 2006.
Short summary
Detecting and predicting change in the structure and functioning of marine food webs is a priority for Earth system science. We collated fish stomach content data to improve understanding of feeding interactions for the North Atlantic and Arctic oceans. To illustrate how these data can be used, we estimate species- and size-specific feeding traits, classify predators into functional feeding groups, and reveal spatially extensive temporal change in marine ecosystem structure and functioning.
Detecting and predicting change in the structure and functioning of marine food webs is a...
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