Articles | Volume 15, issue 1
https://doi.org/10.5194/essd-15-511-2023
© Author(s) 2023. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/essd-15-511-2023
© Author(s) 2023. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Data description paper
| 
01 Feb 2023
Data description paper |
| 01 Feb 2023
| 01 Feb 2023
Global dataset on seagrass meadow structure, biomass and production
Simone Strydom
Centre for Marine Ecosystems Research and School of Science, Edith
Cowan University, Joondalup, 270 Joondalup Dr, WA 6027, Australia
Marine Science Program, Biodiversity and Conservation Science,
Department of Biodiversity, Conservation and Attractions, 17 Dick Perry Ave,
Kensington, WA 6151, Australia
Roisin McCallum
Centre for Marine Ecosystems Research and School of Science, Edith
Cowan University, Joondalup, 270 Joondalup Dr, WA 6027, Australia
Anna Lafratta
Centre for Marine Ecosystems Research and School of Science, Edith
Cowan University, Joondalup, 270 Joondalup Dr, WA 6027, Australia
Chanelle L. Webster
Centre for Marine Ecosystems Research and School of Science, Edith
Cowan University, Joondalup, 270 Joondalup Dr, WA 6027, Australia
Caitlyn M. O'Dea
Centre for Marine Ecosystems Research and School of Science, Edith
Cowan University, Joondalup, 270 Joondalup Dr, WA 6027, Australia
Nicole E. Said
Centre for Marine Ecosystems Research and School of Science, Edith
Cowan University, Joondalup, 270 Joondalup Dr, WA 6027, Australia
Natasha Dunham
Centre for Marine Ecosystems Research and School of Science, Edith
Cowan University, Joondalup, 270 Joondalup Dr, WA 6027, Australia
Karina Inostroza
Biosfera, Associació d'Educació Ambiental, Catalonia, Spain
Cristian Salinas
Centre for Marine Ecosystems Research and School of Science, Edith
Cowan University, Joondalup, 270 Joondalup Dr, WA 6027, Australia
Samuel Billinghurst
Centre for Marine Ecosystems Research and School of Science, Edith
Cowan University, Joondalup, 270 Joondalup Dr, WA 6027, Australia
Charlie M. Phelps
Centre for Marine Ecosystems Research and School of Science, Edith
Cowan University, Joondalup, 270 Joondalup Dr, WA 6027, Australia
Connor Campbell
Centre for Marine Ecosystems Research and School of Science, Edith
Cowan University, Joondalup, 270 Joondalup Dr, WA 6027, Australia
Connor Gorham
Centre for Marine Ecosystems Research and School of Science, Edith
Cowan University, Joondalup, 270 Joondalup Dr, WA 6027, Australia
Rachele Bernasconi
Centre for Marine Ecosystems Research and School of Science, Edith
Cowan University, Joondalup, 270 Joondalup Dr, WA 6027, Australia
Anna M. Frouws
Centre for Marine Ecosystems Research and School of Science, Edith
Cowan University, Joondalup, 270 Joondalup Dr, WA 6027, Australia
Axel Werner
Centre for Marine Ecosystems Research and School of Science, Edith
Cowan University, Joondalup, 270 Joondalup Dr, WA 6027, Australia
Federico Vitelli
Centre for Marine Ecosystems Research and School of Science, Edith
Cowan University, Joondalup, 270 Joondalup Dr, WA 6027, Australia
Viena Puigcorbé
Centre for Marine Ecosystems Research and School of Science, Edith
Cowan University, Joondalup, 270 Joondalup Dr, WA 6027, Australia
Institut de Ciències del Mar, Consejo Superior de Investigaciones
Científicas, 08003 Barcelona, Spain
Alexandra D'Cruz
Centre for Marine Ecosystems Research and School of Science, Edith
Cowan University, Joondalup, 270 Joondalup Dr, WA 6027, Australia
Kathryn M. McMahon
Centre for Marine Ecosystems Research and School of Science, Edith
Cowan University, Joondalup, 270 Joondalup Dr, WA 6027, Australia
Jack Robinson
Centre for Marine Ecosystems Research and School of Science, Edith
Cowan University, Joondalup, 270 Joondalup Dr, WA 6027, Australia
Megan J. Huggett
School of Environmental and Life Sciences, The University of
Newcastle, 10 Chittaway Rd, Ourimbah, NSW 2258, Australia
Sian McNamara
Centre for Marine Ecosystems Research and School of Science, Edith
Cowan University, Joondalup, 270 Joondalup Dr, WA 6027, Australia
Glenn A. Hyndes
Centre for Marine Ecosystems Research and School of Science, Edith
Cowan University, Joondalup, 270 Joondalup Dr, WA 6027, Australia
Centre for Marine Ecosystems Research and School of Science, Edith
Cowan University, Joondalup, 270 Joondalup Dr, WA 6027, Australia
Centro de Estudios Avanzados de Blanes, Consejo Superior de
Investigaciones Científicas, Blanes, Spain
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Christian Lønborg, Cátia Carreira, Gwenaël Abril, Susana Agustí, Valentina Amaral, Agneta Andersson, Javier Arístegui, Punyasloke Bhadury, Mariana B. Bif, Alberto V. Borges, Steven Bouillon, Maria Ll. Calleja, Luiz C. Cotovicz Jr., Stefano Cozzi, Maryló Doval, Carlos M. Duarte, Bradley Eyre, Cédric G. Fichot, E. Elena García-Martín, Alexandra Garzon-Garcia, Michele Giani, Rafael Gonçalves-Araujo, Renee Gruber, Dennis A. Hansell, Fuminori Hashihama, Ding He, Johnna M. Holding, William R. Hunter, J. Severino P. Ibánhez, Valeria Ibello, Shan Jiang, Guebuem Kim, Katja Klun, Piotr Kowalczuk, Atsushi Kubo, Choon-Weng Lee, Cláudia B. Lopes, Federica Maggioni, Paolo Magni, Celia Marrase, Patrick Martin, S. Leigh McCallister, Roisin McCallum, Patricia M. Medeiros, Xosé Anxelu G. Morán, Frank E. Muller-Karger, Allison Myers-Pigg, Marit Norli, Joanne M. Oakes, Helena Osterholz, Hyekyung Park, Maria Lund Paulsen, Judith A. Rosentreter, Jeff D. Ross, Digna Rueda-Roa, Chiara Santinelli, Yuan Shen, Eva Teira, Tinkara Tinta, Guenther Uher, Masahide Wakita, Nicholas Ward, Kenta Watanabe, Yu Xin, Youhei Yamashita, Liyang Yang, Jacob Yeo, Huamao Yuan, Qiang Zheng, and Xosé Antón Álvarez-Salgado
Earth Syst. Sci. Data, 16, 1107–1119, https://doi.org/10.5194/essd-16-1107-2024, https://doi.org/10.5194/essd-16-1107-2024, 2024
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In this paper, we present the first edition of a global database compiling previously published and unpublished measurements of dissolved organic matter (DOM) collected in coastal waters (CoastDOM v1). Overall, the CoastDOM v1 dataset will be useful to identify global spatial and temporal patterns and to facilitate reuse in studies aimed at better characterizing local biogeochemical processes and identifying a baseline for modelling future changes in coastal waters.
Viena Puigcorbé, Pere Masqué, and Frédéric A. C. Le Moigne
Earth Syst. Sci. Data, 12, 1267–1285, https://doi.org/10.5194/essd-12-1267-2020, https://doi.org/10.5194/essd-12-1267-2020, 2020
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The biological carbon pump is a mechanism by which the oceans capture atmospheric carbon dioxide thanks to microscopic marine algae. Quantifying its strength and efficiency is crucial to understand the global carbon budget and be able to forecast its trends. The radioactive pair 234Th : 238U has been extensively used for that purpose. This is a global compilation of carbon-to-234Th ratios (needed to convert the 234Th fluxes to carbon fluxes) that will contribute to improve our modeling efforts.
Ole Valk, Michiel M. Rutgers van der Loeff, Walter Geibert, Sandra Gdaniec, S. Bradley Moran, Kate Lepore, Robert Lawrence Edwards, Yanbin Lu, Viena Puigcorbé, Nuria Casacuberta, Ronja Paffrath, William Smethie, and Matthieu Roy-Barman
Ocean Sci., 16, 221–234, https://doi.org/10.5194/os-16-221-2020, https://doi.org/10.5194/os-16-221-2020, 2020
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After 2007 230Th decreased significantly in the central Amundsen Basin. This decrease is accompanied by a circulation change, indicated by changes in salinity. Ventilation of waters is most likely not the reason for the observed depletion in 230Th as atmospherically derived tracers do not reveal an increase in ventilation rate. It is suggested that these interior waters have undergone enhanced scavenging of Th during transit from Fram Strait and the Barents Sea to the central Amundsen Basin.
Related subject area
Domain: ESSD – Ocean | Subject: Biological oceanography
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A hyperspectral and multi-angular synthetic dataset for algorithm development in waters of varying trophic levels and optical complexity
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Metazoan zooplankton in the Bay of Biscay: a 16-year record of individual sizes and abundances obtained using the ZooScan and ZooCAM imaging systems
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The Coastal Surveillance Through Observation of Ocean Color (COASTℓOOC) dataset
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Nicolas Schiffrine, Fatma Dhifallah, Kaven Dionne, Michel Poulin, Sylvie Lessard, André Rochon, and Michel Gosselin
Earth Syst. Sci. Data, 16, 5681–5701, https://doi.org/10.5194/essd-16-5681-2024, https://doi.org/10.5194/essd-16-5681-2024, 2024
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Growing concern arises in the Arctic Ocean as toxic and harmful phytoplankton emerge due to climate change. The potential surge in these occurrences threatens both human health and the Arctic ecosystem. Our ongoing research yields insights into spatial patterns and biodiversity, challenging the belief that the Arctic is unsuitable for toxic and harmful algal events. This work underscores the need to comprehend and address the ecological impact of these emerging species in the Arctic environment.
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Christopher D. Elvidge, Tilottama Ghosh, Namrata Chatterjee, Mikhail Zhizhin, Paul C. Sutton, and Morgan Bazilian
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Marine Di Stefano, David Nerini, Itziar Alvarez, Giandomenico Ardizzone, Patrick Astruch, Gotzon Basterretxea, Aurélie Blanfuné, Denis Bonhomme, Antonio Calò, Ignacio Catalan, Carlo Cattano, Adrien Cheminée, Romain Crec'hriou, Amalia Cuadros, Antonio Di Franco, Carlos Diaz-Gil, Tristan Estaque, Robin Faillettaz, Fabiana C. Félix-Hackradt, José Antonio Garcia-Charton, Paolo Guidetti, Loïc Guilloux, Jean-Georges Harmelin, Mireille Harmelin-Vivien, Manuel Hidalgo, Hilmar Hinz, Jean-Olivier Irisson, Gabriele La Mesa, Laurence Le Diréach, Philippe Lenfant, Enrique Macpherson, Sanja Matić-Skoko, Manon Mercader, Marco Milazzo, Tiffany Monfort, Joan Moranta, Manuel Muntoni, Matteo Murenu, Lucie Nunez, M. Pilar Olivar, Jérémy Pastor, Ángel Pérez-Ruzafa, Serge Planes, Nuria Raventos, Justine Richaume, Elodie Rouanet, Erwan Roussel, Sandrine Ruitton, Ana Sabatés, Thierry Thibaut, Daniele Ventura, Laurent Vigliola, Dario Vrdoljak, and Vincent Rossi
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Yan Yang, Patrick Brockmann, Carolina Galdino, Uwe Schindler, and Frédéric Gazeau
Earth Syst. Sci. Data, 16, 3771–3780, https://doi.org/10.5194/essd-16-3771-2024, https://doi.org/10.5194/essd-16-3771-2024, 2024
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Studies investigating the effects of ocean acidification on marine organisms and communities have been steadily increasing. To facilitate data comparison, a data compilation hosted by the PANGAEA Data Publisher was initiated in 2008 and is updated on a regular basis. By November 2023, a total of 1501 datasets (~25 million data points) from 1554 papers have been archived. To filter and access relevant biological response data from this compilation, a user-friendly portal was launched in 2018.
Jaime Pitarch and Vittorio Ernesto Brando
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-295, https://doi.org/10.5194/essd-2024-295, 2024
Revised manuscript accepted for ESSD
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This research presents a comprehensive synthetic dataset in the optical domain, created thanks to a large mining of available bio-optical data. Utilizing the Hydrolight radiative transfer model, the dataset provides detailed light fields from ultraviolet to visible light, aiding in the development of satellite algorithms. The dataset will significantly enhance research on light behavior in water and supporting future hyperspectral missions. It has been made publicly available on Zenodo.
Thomas M. Jordan, Giorgio Dall'Olmo, Gavin Tilstone, Robert J. W. Brewin, Francesco Nencioli, Ruth Airs, Crystal S. Thomas, and Louise Schlüter
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-267, https://doi.org/10.5194/essd-2024-267, 2024
Revised manuscript accepted for ESSD
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We present a compilation of water optical properties and phytoplankton pigments from the surface of the Atlantic Ocean collected during nine cruises between 2009–2019. We derive continuous Chlorophyll a concentrations (a biomass proxy) from water absorption. We then illustrate geographical variations and relationships for water optical properties, Chlorophyll a, and the other pigments. The dataset will be useful to researchers in ocean optics, remote-sensing, ecology, and biogeochemistry.
Mathilde Dugenne, Marco Corrales-Ugalde, Jessica Y. Luo, Rainer Kiko, Todd D. O'Brien, Jean-Olivier Irisson, Fabien Lombard, Lars Stemmann, Charles Stock, Clarissa R. Anderson, Marcel Babin, Nagib Bhairy, Sophie Bonnet, Francois Carlotti, Astrid Cornils, E. Taylor Crockford, Patrick Daniel, Corinne Desnos, Laetitia Drago, Amanda Elineau, Alexis Fischer, Nina Grandrémy, Pierre-Luc Grondin, Lionel Guidi, Cecile Guieu, Helena Hauss, Kendra Hayashi, Jenny A. Huggett, Laetitia Jalabert, Lee Karp-Boss, Kasia M. Kenitz, Raphael M. Kudela, Magali Lescot, Claudie Marec, Andrew McDonnell, Zoe Mériguet, Barbara Niehoff, Margaux Noyon, Thelma Panaïotis, Emily Peacock, Marc Picheral, Emilie Riquier, Collin Roesler, Jean-Baptiste Romagnan, Heidi M. Sosik, Gretchen Spencer, Jan Taucher, Chloé Tilliette, and Marion Vilain
Earth Syst. Sci. Data, 16, 2971–2999, https://doi.org/10.5194/essd-16-2971-2024, https://doi.org/10.5194/essd-16-2971-2024, 2024
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Plankton and particles influence carbon cycling and energy flow in marine ecosystems. We used three types of novel plankton imaging systems to obtain size measurements from a range of plankton and particle sizes and across all major oceans. Data were compiled and cross-calibrated from many thousands of images, showing seasonal and spatial changes in particle size structure in different ocean basins. These datasets form the first release of the Pelagic Size Structure database (PSSdb).
Michael Morando, Jonathan Magasin, Shunyan Cheung, Matthew M. Mills, Jonathan P. Zehr, and Kendra A. Turk-Kubo
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-163, https://doi.org/10.5194/essd-2024-163, 2024
Revised manuscript accepted for ESSD
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Nitrogen is crucial in ocean food webs, but only some microbes can fix N2 gas into a bioavailable form. Most are known only by their nifH gene sequence. We created a software workflow for nifH data and ran it on 865 ocean samples, producing a database that captures the global diversity of N2-fixing marine microbes and the environmental factors that influence them. The workflow and DB can standardize analyses on past and future nifH datasets to enable insights into marine microbial communities.
Nina Grandremy, Paul Bourriau, Edwin Daché, Marie-Madeleine Danielou, Mathieu Doray, Christine Dupuy, Bertrand Forest, Laetitia Jalabert, Martin Huret, Sophie Le Mestre, Antoine Nowaczyk, Pierre Petitgas, Philippe Pineau, Justin Rouxel, Morgan Tardivel, and Jean-Baptiste Romagnan
Earth Syst. Sci. Data, 16, 1265–1282, https://doi.org/10.5194/essd-16-1265-2024, https://doi.org/10.5194/essd-16-1265-2024, 2024
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We present two space- and time-resolved zooplankton datasets originating from samples collected in the Bay of Biscay in spring over the 2004–2019 period and imaged with the interoperable imaging systems ZooScan and ZooCAM. These datasets are suited for long-term size-based or combined size- and taxonomy-based ecological studies of zooplankton. The set of sorted images are provided along with a set of morphological descriptors that are useful when machine learning is applied to plankton studies.
Dieter Piepenburg, Thomas Brey, Katharina Teschke, Jennifer Dannheim, Paul Kloss, Marianne Rehage, Miriam L. S. Hansen, and Casper Kraan
Earth Syst. Sci. Data, 16, 1177–1184, https://doi.org/10.5194/essd-16-1177-2024, https://doi.org/10.5194/essd-16-1177-2024, 2024
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Research on ecological footprints of climate change and human impacts in Arctic seas is still hampered by problems in accessing sound data, which is unevenly distributed among regions and faunal groups. To address this issue, we present the PAN-Arctic data collection of benthic BIOtas (PANABIO). It provides open access to valuable biodiversity information by integrating data from various sources and of various formats and offers versatile exploration tools for data filtering and mapping.
Andrea J. McEvoy, Angus Atkinson, Ruth L. Airs, Rachel Brittain, Ian Brown, Elaine S. Fileman, Helen S. Findlay, Caroline L. McNeill, Clare Ostle, Tim J. Smyth, Paul J. Somerfield, Karen Tait, Glen A. Tarran, Simon Thomas, Claire E. Widdicombe, E. Malcolm S. Woodward, Amanda Beesley, David V. P. Conway, James Fishwick, Hannah Haines, Carolyn Harris, Roger Harris, Pierre Hélaouët, David Johns, Penelope K. Lindeque, Thomas Mesher, Abigail McQuatters-Gollop, Joana Nunes, Frances Perry, Ana M. Queiros, Andrew Rees, Saskia Rühl, David Sims, Ricardo Torres, and Stephen Widdicombe
Earth Syst. Sci. Data, 15, 5701–5737, https://doi.org/10.5194/essd-15-5701-2023, https://doi.org/10.5194/essd-15-5701-2023, 2023
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Western Channel Observatory is an oceanographic time series and biodiversity reference site within 40 km of Plymouth (UK), sampled since 1903. Differing levels of reporting and formatting hamper the use of the valuable individual datasets. We provide the first summary database as monthly averages where comparisons can be made of the physical, chemical and biological data. We describe the database, illustrate its utility to examine seasonality and longer-term trends, and summarize previous work.
Zhongkun Hong, Di Long, Xingdong Li, Yiming Wang, Jianmin Zhang, Mohamed A. Hamouda, and Mohamed M. Mohamed
Earth Syst. Sci. Data, 15, 5281–5300, https://doi.org/10.5194/essd-15-5281-2023, https://doi.org/10.5194/essd-15-5281-2023, 2023
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Changes in ocean chlorophyll-a (Chl-a) concentration are related to ecosystem balance. Here, we present high-quality gap-filled Chl-a data in open oceans, reflecting the distribution and changes in global Chl-a concentration. Our findings highlight the efficacy of reconstructing missing satellite observations using convolutional neural networks. This dataset and model are valuable for research in ocean color remote sensing, offering data support and methodological references for related studies.
Thomas J. Ryan-Keogh, Sandy J. Thomalla, Nicolette Chang, and Tumelo Moalusi
Earth Syst. Sci. Data, 15, 4829–4848, https://doi.org/10.5194/essd-15-4829-2023, https://doi.org/10.5194/essd-15-4829-2023, 2023
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Oceanic productivity has been highlighted as an important environmental indicator of climate change in comparison to other existing metrics. However, the availability of these data to assess trends and trajectories is plagued with issues, such as application to only a single satellite reducing the time period for assessment. We have applied multiple algorithms to the longest ocean colour record to provide a record for assessing climate-change-driven trends.
Raed Halawi Ghosn, Émilie Poisson-Caillault, Guillaume Charria, Armel Bonnat, Michel Repecaud, Jean-Valery Facq, Loïc Quéméner, Vincent Duquesne, Camille Blondel, and Alain Lefebvre
Earth Syst. Sci. Data, 15, 4205–4218, https://doi.org/10.5194/essd-15-4205-2023, https://doi.org/10.5194/essd-15-4205-2023, 2023
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This article describes a long-term (2004–2022) dataset from an in situ instrumented station located in the eastern English Channel and belonging to the COAST-HF network (ILICO). It provides high temporal resolution (sub-hourly) oceanographic and meteorological measurements. The MAREL Carnot dataset can be used to conduct research in marine ecology, oceanography, and data science. It was utilized to characterize recurrent, rare, and extreme events in the coastal area.
Shungudzemwoyo P. Garaba, Michelle Albinus, Guido Bonthond, Sabine Flöder, Mario L. M. Miranda, Sven Rohde, Joanne Y. L. Yong, and Jochen Wollschläger
Earth Syst. Sci. Data, 15, 4163–4179, https://doi.org/10.5194/essd-15-4163-2023, https://doi.org/10.5194/essd-15-4163-2023, 2023
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These high-quality data document a harmful algal bloom dominated by Nodularia spumigena, a cyanobacterium that has been recurring in waters around the world, using advanced water observation technologies. We also showcase the benefits of experiments of opportunity and the issues with obtaining synoptic spatio-temporal data for monitoring water quality. The dataset can be leveraged to gain more knowledge on related blooms, develop detection algorithms and optimize future monitoring efforts.
Fabrice Stephenson, Tom Brough, Drew Lohrer, Daniel Leduc, Shane Geange, Owen Anderson, David Bowden, Malcolm R. Clark, Niki Davey, Enrique Pardo, Dennis P. Gordon, Brittany Finucci, Michelle Kelly, Diana Macpherson, Lisa McCartain, Sadie Mills, Kate Neill, Wendy Nelson, Rachael Peart, Matthew H. Pinkerton, Geoffrey B. Read, Jodie Robertson, Ashley Rowden, Kareen Schnabel, Andrew Stewart, Carl Struthers, Leigh Tait, Di Tracey, Shaun Weston, and Carolyn Lundquist
Earth Syst. Sci. Data, 15, 3931–3939, https://doi.org/10.5194/essd-15-3931-2023, https://doi.org/10.5194/essd-15-3931-2023, 2023
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Understanding the distribution of species that live at the seafloor is critical to the management of the marine environment but is lacking in many areas. Here, we showcase an atlas of seafloor biodiversity that describes the distribution of approximately 600 organisms throughout New Zealand’s vast marine realm. Each layer in the open-access atlas has been evaluated by leading experts and provides a key resource for the sustainable use of New Zealand's marine environment.
Hubert Loisel, Daniel Schaffer Ferreira Jorge, Rick A. Reynolds, and Dariusz Stramski
Earth Syst. Sci. Data, 15, 3711–3731, https://doi.org/10.5194/essd-15-3711-2023, https://doi.org/10.5194/essd-15-3711-2023, 2023
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Studies of light fields in aquatic environments require data from radiative transfer simulations that are free of measurement errors. In contrast to previously published synthetic optical databases, the present database was created by simulations covering a broad range of seawater optical properties that exhibit probability distributions consistent with a global ocean dominated by open-ocean pelagic environments. This database is intended to support ocean color science and applications.
Philippe Massicotte, Marcel Babin, Frank Fell, Vincent Fournier-Sicre, and David Doxaran
Earth Syst. Sci. Data, 15, 3529–3545, https://doi.org/10.5194/essd-15-3529-2023, https://doi.org/10.5194/essd-15-3529-2023, 2023
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The COASTlOOC oceanographic expeditions in 1997 and 1998 studied the relationship between seawater properties and biology and chemistry across the European coasts. The team collected data from 379 stations using ships and helicopters to support the development of ocean color remote-sensing algorithms. This unique and consistent dataset is still used today by researchers.
Valentin Siebert, Brivaëla Moriceau, Lukas Fröhlich, Bernd R. Schöne, Erwan Amice, Beatriz Beker, Kevin Bihannic, Isabelle Bihannic, Gaspard Delebecq, Jérémy Devesa, Morgane Gallinari, Yoan Germain, Émilie Grossteffan, Klaus Peter Jochum, Thierry Le Bec, Manon Le Goff, Céline Liorzou, Aude Leynaert, Claudie Marec, Marc Picheral, Peggy Rimmelin-Maury, Marie-Laure Rouget, Matthieu Waeles, and Julien Thébault
Earth Syst. Sci. Data, 15, 3263–3281, https://doi.org/10.5194/essd-15-3263-2023, https://doi.org/10.5194/essd-15-3263-2023, 2023
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This article presents an overview of the results of biological, chemical and physical parameters measured at high temporal resolution (sampling once and twice per week) during environmental monitoring that took place in 2021 in the Bay of Brest. We strongly believe that this dataset could be very useful for other scientists performing sclerochronological investigations, studying biogeochemical cycles or conducting various ecological research projects.
Sofie Vranken, Marine Robuchon, Stefanie Dekeyzer, Ignacio Bárbara, Inka Bartsch, Aurélie Blanfuné, Charles-François Boudouresque, Wim Decock, Christophe Destombe, Bruno de Reviers, Pilar Díaz-Tapia, Anne Herbst, Romain Julliard, Rolf Karez, Priit Kersen, Stacy A. Krueger-Hadfield, Ralph Kuhlenkamp, Akira F. Peters, Viviana Peña, Cristina Piñeiro-Corbeira, Fabio Rindi, Florence Rousseau, Jan Rueness, Hendrik Schubert, Kjersti Sjøtun, Marta Sansón, Dan Smale, Thierry Thibaut, Myriam Valero, Leen Vandepitte, Bart Vanhoorne, Alba Vergés, Marc Verlaque, Christophe Vieira, Line Le Gall, Frederik Leliaert, and Olivier De Clerck
Earth Syst. Sci. Data, 15, 2711–2754, https://doi.org/10.5194/essd-15-2711-2023, https://doi.org/10.5194/essd-15-2711-2023, 2023
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We present AlgaeTraits, a high-quality seaweed trait database. The data are structured within the framework of WoRMS and are supported by an expert editor community. With 45 175 trait records for 21 prioritised biological and ecological traits, and a taxonomic coverage of 1 745 European species, AlgaeTraits significantly advances previous efforts to provide standardised seaweed trait data. AlgaeTraits will serve as a foundation for future research on diversity and evolution of seaweeds.
Alain Lefebvre and David Devreker
Earth Syst. Sci. Data, 15, 1077–1092, https://doi.org/10.5194/essd-15-1077-2023, https://doi.org/10.5194/essd-15-1077-2023, 2023
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The Suivi Regional des Nutriments (SRN) data set includes long-term time series on marine phytoplankton and physicochemical measures in the eastern English Channel and the Southern Bight of the North Sea. These data sets should be useful for comparing contrasted coastal marine ecosystems to further knowledge about the direct and indirect effects of human pressures and environmental changes on ecosystem structure and function, including eutrophication and harmful algal bloom issues.
Jacopo Pulcinella, Enrico Nicola Armelloni, Carmen Ferrà, Giuseppe Scarcella, and Anna Nora Tassetti
Earth Syst. Sci. Data, 15, 809–820, https://doi.org/10.5194/essd-15-809-2023, https://doi.org/10.5194/essd-15-809-2023, 2023
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Deep-sea fishery in the Mediterranean Sea was historically driven by the commercial profitability of deepwater red shrimps. Understanding spatiotemporal dynamics of fishing is key to comprehensively evaluate the status of these resources and prevent stock collapse. The observed monthly fishing effort and frequency dataset released by the automatic identification system (AIS) may help researchers as well as those involved in fishery management and in the update of existing management plans.
Flavienne Bruyant, Rémi Amiraux, Marie-Pier Amyot, Philippe Archambault, Lise Artigue, Lucas Barbedo de Freitas, Guislain Bécu, Simon Bélanger, Pascaline Bourgain, Annick Bricaud, Etienne Brouard, Camille Brunet, Tonya Burgers, Danielle Caleb, Katrine Chalut, Hervé Claustre, Véronique Cornet-Barthaux, Pierre Coupel, Marine Cusa, Fanny Cusset, Laeticia Dadaglio, Marty Davelaar, Gabrièle Deslongchamps, Céline Dimier, Julie Dinasquet, Dany Dumont, Brent Else, Igor Eulaers, Joannie Ferland, Gabrielle Filteau, Marie-Hélène Forget, Jérome Fort, Louis Fortier, Martí Galí, Morgane Gallinari, Svend-Erik Garbus, Nicole Garcia, Catherine Gérikas Ribeiro, Colline Gombault, Priscilla Gourvil, Clémence Goyens, Cindy Grant, Pierre-Luc Grondin, Pascal Guillot, Sandrine Hillion, Rachel Hussherr, Fabien Joux, Hannah Joy-Warren, Gabriel Joyal, David Kieber, Augustin Lafond, José Lagunas, Patrick Lajeunesse, Catherine Lalande, Jade Larivière, Florence Le Gall, Karine Leblanc, Mathieu Leblanc, Justine Legras, Keith Lévesque, Kate-M. Lewis, Edouard Leymarie, Aude Leynaert, Thomas Linkowski, Martine Lizotte, Adriana Lopes dos Santos, Claudie Marec, Dominique Marie, Guillaume Massé, Philippe Massicotte, Atsushi Matsuoka, Lisa A. Miller, Sharif Mirshak, Nathalie Morata, Brivaela Moriceau, Philippe-Israël Morin, Simon Morisset, Anders Mosbech, Alfonso Mucci, Gabrielle Nadaï, Christian Nozais, Ingrid Obernosterer, Thimoté Paire, Christos Panagiotopoulos, Marie Parenteau, Noémie Pelletier, Marc Picheral, Bernard Quéguiner, Patrick Raimbault, Joséphine Ras, Eric Rehm, Llúcia Ribot Lacosta, Jean-François Rontani, Blanche Saint-Béat, Julie Sansoulet, Noé Sardet, Catherine Schmechtig, Antoine Sciandra, Richard Sempéré, Caroline Sévigny, Jordan Toullec, Margot Tragin, Jean-Éric Tremblay, Annie-Pier Trottier, Daniel Vaulot, Anda Vladoiu, Lei Xue, Gustavo Yunda-Guarin, and Marcel Babin
Earth Syst. Sci. Data, 14, 4607–4642, https://doi.org/10.5194/essd-14-4607-2022, https://doi.org/10.5194/essd-14-4607-2022, 2022
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This paper presents a dataset acquired during a research cruise held in Baffin Bay in 2016. We observed that the disappearance of sea ice in the Arctic Ocean increases both the length and spatial extent of the phytoplankton growth season. In the future, this will impact the food webs on which the local populations depend for their food supply and fisheries. This dataset will provide insight into quantifying these impacts and help the decision-making process for policymakers.
Rainer Kiko, Marc Picheral, David Antoine, Marcel Babin, Léo Berline, Tristan Biard, Emmanuel Boss, Peter Brandt, Francois Carlotti, Svenja Christiansen, Laurent Coppola, Leandro de la Cruz, Emilie Diamond-Riquier, Xavier Durrieu de Madron, Amanda Elineau, Gabriel Gorsky, Lionel Guidi, Helena Hauss, Jean-Olivier Irisson, Lee Karp-Boss, Johannes Karstensen, Dong-gyun Kim, Rachel M. Lekanoff, Fabien Lombard, Rubens M. Lopes, Claudie Marec, Andrew M. P. McDonnell, Daniela Niemeyer, Margaux Noyon, Stephanie H. O'Daly, Mark D. Ohman, Jessica L. Pretty, Andreas Rogge, Sarah Searson, Masashi Shibata, Yuji Tanaka, Toste Tanhua, Jan Taucher, Emilia Trudnowska, Jessica S. Turner, Anya Waite, and Lars Stemmann
Earth Syst. Sci. Data, 14, 4315–4337, https://doi.org/10.5194/essd-14-4315-2022, https://doi.org/10.5194/essd-14-4315-2022, 2022
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The term
marine particlescomprises detrital aggregates; fecal pellets; bacterioplankton, phytoplankton and zooplankton; and even fish. Here, we present a global dataset that contains 8805 vertical particle size distribution profiles obtained with Underwater Vision Profiler 5 (UVP5) camera systems. These data are valuable to the scientific community, as they can be used to constrain important biogeochemical processes in the ocean, such as the flux of carbon to the deep sea.
Autun Purser, Laura Hehemann, Lilian Boehringer, Ellen Werner, Santiago E. A. Pineda-Metz, Lucie Vignes, Axel Nordhausen, Moritz Holtappels, and Frank Wenzhoefer
Earth Syst. Sci. Data, 14, 3635–3648, https://doi.org/10.5194/essd-14-3635-2022, https://doi.org/10.5194/essd-14-3635-2022, 2022
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Within this paper we present the seafloor images, maps and acoustic camera data collected by a towed underwater research platform deployed in 20 locations across the eastern Weddell Sea, Antarctica, during the PS124 COSMUS expedition with the research icebreaker RV Polarstern in 2021. The 20 deployments highlight the great variability in seafloor structure and faunal communities present. Of key interest was the discovery of the largest fish nesting colony discovered globally to date.
Cited articles
Ascioti, F. A., Mangano, M. C., Marcianò, C., and Sarà, G.:
The sanitation service of seagrasses–Dependencies and implications for the
estimation of avoided costs, Ecosystem Services, 54, 101418, https://doi.org/10.1016/j.ecoser.2022.101418, 2022.
Cullen-Unsworth, L. C., Nordlund, L. M., Paddock, J., Baker, S., McKenzie,
L. J., and Unsworth, R. K. F.: Seagrass meadows globally as a coupled
social-ecological system: Implications for human wellbeing, Mar. Pollut.
Bull., 83, 387–397, https://doi.org/10.1016/j.marpolbul.2013.06.001, 2014.
de los Santos, C. B., Krause-Jensen, D., Alcoverro, T., Marbà, N.,
Duarte, C. M., van Katwijk, M. M., Pérez, M., Romero, J.,
Sánchez-Lizaso, J. L., Roca, G., Jankowska, E., Pérez-Lloréns,
J. L., Fournier, J., Montefalcone, M., Pergent, G., Ruiz, J. M., Cabaço,
S., Cook, K., Wilkes, R. J., Moy, F. E., Trayter, G. M. R., Arañó,
X. S., de Jong, D. J., Fernández-Torquemada, Y., Auby, I., Vergara, J.
J., and Santos, R.: Recent trend reversal for declining European seagrass
meadows, Nat. Commun., 10, 1–8, https://doi.org/10.1038/s41467-019-11340-4, 2019.
Duarte, C. M. and Chiscano, C. L.: Seagrass biomass and production: A
reassessment, Aquat. Bot., 65, 159–174,
https://doi.org/10.1016/S0304-3770(99)00038-8, 1999.
Duarte, C. M., Losada, I. J., Hendriks, I. E., Mazarrasa, I., and Marbà,
N.: The role of coastal plant communities for climate change mitigation and
adaptation, Nat. Clim. Chang., 3, 961–968, https://doi.org/10.1038/nclimate1970,
2013.
Graul, C.: leafletR: Interactive Web-Maps Based on the Leaflet JavaScript
Library,
http://cran.r-project.org/package=leafletR (last access: 12 September 2023), 2016.
Hall, M. O., Durako, M. J., Fourqurean, J. W., and Zieman, J. C.: Decadal
changes in seagrass distribution and abundance in Florida Bay, Estuaries,
22, 445–459, https://doi.org/10.2307/1353210, 1999.
Hoegh-Guldberg, O. and Bruno, J. F.: The impact of climate change on the
world's marine ecosystems, Science, 328, 1523–1528,
https://doi.org/10.1126/science.1189930, 2010.
Kilminster, K., McMahon, K., Waycott, M., Kendrick, G. A., Scanes, P.,
McKenzie, L., O'Brien, K. R., Lyons, M., Ferguson, A., Maxwell, P., Glasby,
T., and Udy, J.: Unravelling complexity in seagrass systems for management:
Australia as a microcosm, Sci. Total Environ., 534, 97–109,
https://doi.org/10.1016/J.SCITOTENV.2015.04.061, 2015.
Lamb, J. B., Van De Water, J. A. J. M., Bourne, D. G., Altier, C., Hein, M. Y., Fiorenza, E. A., Abu, N., Jompa, J., and Harvell, C. D.: Seagrass ecosystems reduce
exposure to bacterial pathogens of humans, fishes, and
invertebrates, Science, 355, 731–733, https://doi.org/10.1126/science.aal1956, 2017.
McMahon, K., Collier, C., and Lavery, P. S.: Identifying robust bioindicators
of light stress in seagrasses: A meta-analysis, Ecol. Indic., 30, 7–15,
https://doi.org/10.1016/j.ecolind.2013.01.030, 2013.
Nordlund, L. M., Koch, E. W., Barbier, E. B., and Creed, J. C.: Seagrass
ecosystem services and their variability across genera and geographical
regions, edited by K. O. Reinhart, PLoS One, 11, e0163091,
https://doi.org/10.1371/journal.pone.0163091, 2016.
R Core Team: R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria, https://www.R-project.org/ (last access: 5 December 2022), 2020.
Short, F., Carruthers, T., Dennison, W., and Waycott, M.: Global seagrass
distribution and diversity: A bioregional model, J. Exp. Mar. Bio. Ecol.,
350, 3–20, https://doi.org/10.1016/j.jembe.2007.06.012, 2007.
Short, F. T. and Coles, R. G. (Eds.): Global seagrass research methods, Elsevier, ISBN 0 444 50891 0,
2001.
Short, F. T., Polidoro, B., Livingstone, S. R., Carpenter, K. E., Bandeira,
S., Bujang, J. S., Calumpong, H. P., Carruthers, T. J. B., Coles, R. G.,
Dennison, W. C., Erftemeijer, P. L. A., Fortes, M. D., Freeman, A. S.,
Jagtap, T. G., Kamal, A. H. M., Kendrick, G. A., Judson Kenworthy, W., La
Nafie, Y. A., Nasution, I. M., Orth, R. J., Prathep, A., Sanciangco, J. C.,
Tussenbroek, B. van, Vergara, S. G., Waycott, M., and Zieman, J. C.:
Extinction risk assessment of the world's seagrass species, Biol. Conserv.,
144, 1961–1971, https://doi.org/10.1016/J.BIOCON.2011.04.010, 2011.
Strydom, S., Murray, K., Wilson, S., Huntley, B., Rule, M., Heithaus, M.,
Bessey, C., Kendrick, G. A., Burkholder, D., Fraser, M. W., and Zdunic, K.:
Too hot to handle: Unprecedented seagrass death driven by marine heatwave in
a World Heritage Area, Glob. Chang. Biol., 26, 3525–3538,
https://doi.org/10.1111/gcb.15065, 2020.
Strydom, S. Webster, C. L., O'Dea, C. M., Said, N. E.,
McCallum, R., Inostroza, K., Salinas, C., Billinghurst,
S., Lafratta, A., Phelps, C. M., Campbell, C., Gorham, C.,
Dunham, N., Bernasconi, R., Frouws, A., Werner, A., Vitelli,
F., Puigcorbé, V., D'Cruz, A., McMahon, K. M.,
Robinson, J., Huggett, M. J., McNamara, S., Hyndes, G. A., and Serrano,
Ó.: Global database of key seagrass structure, biomass,
production and reproduction variables, PANGAEA [data set], https://doi.org/10.1594/PANGAEA.929968, 2021.
UNEP-WCMC and Short, F. T.: Global distribution of seagrasses (version 6.0), Sixth update to the data layer used in Green and Short (2003), Cambridge (UK), UN Environment World Conservation Monitoring Centre, http://data.unepwcmc.org/datasets/7 (last access: 5 June 2018), 2017.
Unsworth, R. K. F., McKenzie, L. J., Collier, C. J., Cullen-Unsworth, L. C.,
Duarte, C. M., Eklöf, J. S., Jarvis, J. C., Jones, B. L., and Nordlund,
L. M.: Global challenges for seagrass conservation, Ambio, 48, 801–815,
https://doi.org/10.1007/s13280-018-1115-y, 2018.
Waycott, M., Duarte, C. M., Carruthers, T. J. B., Orth, R. J., Dennison, W.
C., Olyarnik, S., Calladine, A., Fourqurean, J. W., Heck, K. L., Hughes, A.
R., Kendrick, G. A., Kenworthy, W. J., Short, F. T., and Williams, S. L.:
Accelerating loss of seagrasses across the globe threatens coastal
ecosystems, P. Natl. Acad. Sci. USA, 106, 12377–12381,
https://doi.org/10.1073/pnas.0905620106, 2009.
Wickham, H., Averick, M. Bryan, J., Chang, W., McGowan, L. D., François, R., Grolemund, G., Hayes, A., Henry, L., Hester, J., Kuhn, M., Pedersen, T. L., Miller, E., Bache, S. M., Müller, K., Ooms, J., Robinson, D., Seidel, D. P., Spinu, V., Takahashi, K., Vaughan, D., Wilke, C., Woo, K., Yutani, H.: Welcome to the tidyverse, J. Open Source Softw., 4, 1686, https://doi.org/10.21105/joss.01686, 2019.
Short summary
Seagrasses are important underwater plants that provide valuable ecosystem services to humans, including mitigating climate change. Understanding the natural history of seagrass meadows across different types of environments is crucial to conserving seagrasses in the global ocean. This dataset contains data extracted from peer-reviewed publications and highlights which seagrasses have been studied and in which locations and is useful for pointing out which need further investigation.
Seagrasses are important underwater plants that provide valuable ecosystem services to humans,...
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