Quantifying water and CO₂ exchanges through transpiration, evaporation, net photosynthesis, and soil respiration is essential for understanding how ecosystems function. We implemented five methods to estimate these fluxes over a 5-year period across 47 sites. This is the first dataset representing such large spatial and temporal coverage of soil and plant exchanges, and it has many potential applications, such as examining the response of ecosystems to weather extremes and climate change.