Nitrogen (N) and phosphorus (P) contamination of water bodies is a long-term issue due to the long history of N and P inputs to the environment and their persistence. Here, we introduce a long-term and high-resolution dataset of N and P inputs from wastewater (point sources) for Germany, combining data from different sources and conceptual understanding. We also account for uncertainties in modelling choices, thus facilitating robust long-term and large-scale water quality studies.