We present a dataset of EU-wide harmonized subnational crop area, production, and yield statistics with information on data sources, processing steps, missing and derived data, and quality checks. Statistical records (344 282) collected from 1975 to 2020 for soft and durum wheat, winter and spring barley, grain maize, sunflower, and sugar beet were aligned with the EUROSTAT crop legend and the 2016 territorial classification for 961 regions. Time series have a median length of 21 years.