Articles | Volume 12, issue 3
https://doi.org/10.5194/essd-12-1511-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/essd-12-1511-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Data description paper
| 
07 Jul 2020
Data description paper |
| 07 Jul 2020
| 07 Jul 2020
Decomposability of soil organic matter over time: the Soil Incubation Database (SIDb, version 1.0) and guidance for incubation procedures
Christina Schädel
CORRESPONDING AUTHOR
Center of Ecosystem Science and Society, Northern Arizona University,
Flagstaff, AZ 86011, USA
Jeffrey Beem-Miller
Max Planck Institute for Biogeochemistry, Hans-Knöll-Str. 10,
07745 Jena, Germany
Mina Aziz Rad
Max Planck Institute for Biogeochemistry, Hans-Knöll-Str. 10,
07745 Jena, Germany
Susan E. Crow
Department of Natural Resources and Environmental Management, University of Hawaii Manoa, Honolulu, HI 96822, USA
Caitlin E. Hicks Pries
Department of Biological Sciences, Dartmouth College, Hanover, NH
03755, USA
Jessica Ernakovich
Department of Natural Resources and the Environment, University of New
Hampshire, Durham, NH 03824, USA
Alison M. Hoyt
Max Planck Institute for Biogeochemistry, Hans-Knöll-Str. 10,
07745 Jena, Germany
Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
Alain Plante
Department of Earth & Environmental Science, University of
Pennsylvania, Philadelphia, PA 19104, USA
Shane Stoner
Max Planck Institute for Biogeochemistry, Hans-Knöll-Str. 10,
07745 Jena, Germany
Claire C. Treat
Earth Systems Research Center, Institute for the Study of Earth,
Oceans & Space, University of New Hampshire, Durham, NH 03824, USA
Alfred Wegener Institute for Polar and Marine Research, Telegrafenberg, A45, 14473 Potsdam, Germany
Carlos A. Sierra
Max Planck Institute for Biogeochemistry, Hans-Knöll-Str. 10,
07745 Jena, Germany
Viewed
Total article views: 6,052 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 25 Oct 2019)
| HTML | XML | Total | Supplement | BibTeX | EndNote | |
|---|---|---|---|---|---|---|
| 4,414 | 1,492 | 146 | 6,052 | 479 | 154 | 165 |
- HTML: 4,414
- PDF: 1,492
- XML: 146
- Total: 6,052
- Supplement: 479
- BibTeX: 154
- EndNote: 165
Total article views: 5,024 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 07 Jul 2020)
| HTML | XML | Total | Supplement | BibTeX | EndNote | |
|---|---|---|---|---|---|---|
| 3,851 | 1,050 | 123 | 5,024 | 295 | 118 | 135 |
- HTML: 3,851
- PDF: 1,050
- XML: 123
- Total: 5,024
- Supplement: 295
- BibTeX: 118
- EndNote: 135
Total article views: 1,028 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 25 Oct 2019)
| HTML | XML | Total | Supplement | BibTeX | EndNote | |
|---|---|---|---|---|---|---|
| 563 | 442 | 23 | 1,028 | 184 | 36 | 30 |
- HTML: 563
- PDF: 442
- XML: 23
- Total: 1,028
- Supplement: 184
- BibTeX: 36
- EndNote: 30
Viewed (geographical distribution)
Total article views: 6,052 (including HTML, PDF, and XML)
Thereof 5,475 with geography defined
and 577 with unknown origin.
Total article views: 5,024 (including HTML, PDF, and XML)
Thereof 4,580 with geography defined
and 444 with unknown origin.
Total article views: 1,028 (including HTML, PDF, and XML)
Thereof 895 with geography defined
and 133 with unknown origin.
| Country | # | Views | % |
|---|
| Country | # | Views | % |
|---|
| Country | # | Views | % |
|---|
| Total: | 0 |
| HTML: | 0 |
| PDF: | 0 |
| XML: | 0 |
- 1
1
| Total: | 0 |
| HTML: | 0 |
| PDF: | 0 |
| XML: | 0 |
- 1
1
| Total: | 0 |
| HTML: | 0 |
| PDF: | 0 |
| XML: | 0 |
- 1
1
Cited
32 citations as recorded by crossref.
- Carbon flux estimates are sensitive to data source: a comparison of field and lab temperature sensitivity data K. Patel et al. 10.1088/1748-9326/ac9aca
- Aridec: an open database of litter mass loss from aridlands worldwide with recommendations on suitable model applications A. Sarquis et al. 10.5194/essd-14-3471-2022
- Reconciling carbon quality with availability predicts temperature sensitivity of global soil carbon mineralization S. Zhang et al. 10.1073/pnas.2313842121
- On the use of air temperature and precipitation as surrogate predictors in soil respiration modelling J. Jian et al. 10.1111/ejss.13149
- Dynamics of carbon dioxide emission during cracking in peanut shell biochar-amended soil E. Kravchenko et al. 10.1016/j.scitotenv.2023.164922
- Drivers of legacy soil organic matter decomposition after fire in boreal forests B. Izbicki et al. 10.1002/ecs2.4672
- Sources of CO2 Produced in Freshly Thawed Pleistocene-Age Yedoma Permafrost J. Melchert et al. 10.3389/feart.2021.737237
- Thermal responses of dissolved organic matter under global change A. Hu et al. 10.1038/s41467-024-44813-2
- Lignin and fungal abundance modify manganese effects on soil organic carbon persistence at the continental scale A. Possinger et al. 10.1016/j.geoderma.2022.116070
- RADIOCARBON ANALYSIS OF SOIL MICROBIAL BIOMASS VIA DIRECT CHLOROFORM EXTRACTION K. Finstad et al. 10.1017/RDC.2023.80
- A Review of the Main Process-Based Approaches for Modeling N2O Emissions from Agricultural Soils M. Gabbrielli et al. 10.3390/horticulturae10010098
- Optimizing duration of incubation experiments for understanding soil carbon decomposition X. Guan et al. 10.1016/j.geoderma.2022.116225
- COSORE: A community database for continuous soil respiration and other soil‐atmosphere greenhouse gas flux data B. Bond‐Lamberty et al. 10.1111/gcb.15353
- Relationships between greenhouse gas production and landscape position during short-term permafrost thaw under anaerobic conditions in the Lena Delta M. Laurent et al. 10.5194/bg-20-2049-2023
- Reviews and syntheses: The promise of big diverse soil data, moving current practices towards future potential K. Todd-Brown et al. 10.5194/bg-19-3505-2022
- Transformation of n-alkanes from plant to soil: a review C. Thomas et al. 10.5194/soil-7-785-2021
- Soil organic matter stability in forest and cropland components of two agroforestry systems in western Canada Z. An et al. 10.1016/j.geoderma.2023.116463
- Soil incubation methods lead to large differences in inferred methane production temperature sensitivity Z. Li et al. 10.1088/1748-9326/ad3565
- Vulnerability of mineral-organic associations in the rhizosphere T. Bölscher et al. 10.1038/s41467-025-61273-4
- What is the stability of additional organic carbon stored thanks to alternative cropping systems and organic waste product application? A multi-method evaluation T. Kpemoua et al. 10.5194/soil-10-533-2024
- Effect of Mineral Nitrogen and Glucose Application on Temperature Sensitivity (Q10) of Soil Organic Matter Mineralization A. Matvienko et al. 10.1134/S1064229323600124
- Microbial properties in tropical montane forest soils developed from contrasting parent material—An incubation experiment L. Kidinda et al. 10.1002/jpln.202100274
- Linking long-term soil phosphorus management to microbial communities involved in nitrogen reactions R. O’Neill et al. 10.1007/s00374-022-01627-y
- Enabling FAIR data in Earth and environmental science with community-centric (meta)data reporting formats R. Crystal-Ornelas et al. 10.1038/s41597-022-01606-w
- Practical Guide to Measuring Wetland Carbon Pools and Fluxes S. Bansal et al. 10.1007/s13157-023-01722-2
- Soil contamination by diesel fuel destabilizes the soil microbial pools: Insights from permafrost soil incubations O. Masyagina et al. 10.1016/j.envpol.2023.121269
- Copper Bioavailability and Leaching in Conventional and Organic Viticulture under Environmental Stress E. Jez et al. 10.3390/app13042595
- Patterns and drivers of organic matter decomposition in peatland open-water pools J. Arsenault et al. 10.5194/bg-21-3491-2024
- Microbial soil quality indicators depending on land use and soil type in a semi-arid dryland in Kenya K. Mganga et al. 10.1016/j.ejsobi.2024.103626
- Projected soil carbon loss with warming in constrained Earth system models S. Ren et al. 10.1038/s41467-023-44433-2
- Effect of Mineral Nitrogen and Glucose Application on Temperature Sensitivity (<i>Q</i><sub>10</sub>) of Mineralization of Soil Organic Matter А. Matvienko et al. 10.31857/S0032180X22601281
- Leveraging the signature of heterotrophic respiration on atmospheric CO<sub>2</sub> for model benchmarking S. Basile et al. 10.5194/bg-17-1293-2020
31 citations as recorded by crossref.
- Carbon flux estimates are sensitive to data source: a comparison of field and lab temperature sensitivity data K. Patel et al. 10.1088/1748-9326/ac9aca
- Aridec: an open database of litter mass loss from aridlands worldwide with recommendations on suitable model applications A. Sarquis et al. 10.5194/essd-14-3471-2022
- Reconciling carbon quality with availability predicts temperature sensitivity of global soil carbon mineralization S. Zhang et al. 10.1073/pnas.2313842121
- On the use of air temperature and precipitation as surrogate predictors in soil respiration modelling J. Jian et al. 10.1111/ejss.13149
- Dynamics of carbon dioxide emission during cracking in peanut shell biochar-amended soil E. Kravchenko et al. 10.1016/j.scitotenv.2023.164922
- Drivers of legacy soil organic matter decomposition after fire in boreal forests B. Izbicki et al. 10.1002/ecs2.4672
- Sources of CO2 Produced in Freshly Thawed Pleistocene-Age Yedoma Permafrost J. Melchert et al. 10.3389/feart.2021.737237
- Thermal responses of dissolved organic matter under global change A. Hu et al. 10.1038/s41467-024-44813-2
- Lignin and fungal abundance modify manganese effects on soil organic carbon persistence at the continental scale A. Possinger et al. 10.1016/j.geoderma.2022.116070
- RADIOCARBON ANALYSIS OF SOIL MICROBIAL BIOMASS VIA DIRECT CHLOROFORM EXTRACTION K. Finstad et al. 10.1017/RDC.2023.80
- A Review of the Main Process-Based Approaches for Modeling N2O Emissions from Agricultural Soils M. Gabbrielli et al. 10.3390/horticulturae10010098
- Optimizing duration of incubation experiments for understanding soil carbon decomposition X. Guan et al. 10.1016/j.geoderma.2022.116225
- COSORE: A community database for continuous soil respiration and other soil‐atmosphere greenhouse gas flux data B. Bond‐Lamberty et al. 10.1111/gcb.15353
- Relationships between greenhouse gas production and landscape position during short-term permafrost thaw under anaerobic conditions in the Lena Delta M. Laurent et al. 10.5194/bg-20-2049-2023
- Reviews and syntheses: The promise of big diverse soil data, moving current practices towards future potential K. Todd-Brown et al. 10.5194/bg-19-3505-2022
- Transformation of n-alkanes from plant to soil: a review C. Thomas et al. 10.5194/soil-7-785-2021
- Soil organic matter stability in forest and cropland components of two agroforestry systems in western Canada Z. An et al. 10.1016/j.geoderma.2023.116463
- Soil incubation methods lead to large differences in inferred methane production temperature sensitivity Z. Li et al. 10.1088/1748-9326/ad3565
- Vulnerability of mineral-organic associations in the rhizosphere T. Bölscher et al. 10.1038/s41467-025-61273-4
- What is the stability of additional organic carbon stored thanks to alternative cropping systems and organic waste product application? A multi-method evaluation T. Kpemoua et al. 10.5194/soil-10-533-2024
- Effect of Mineral Nitrogen and Glucose Application on Temperature Sensitivity (Q10) of Soil Organic Matter Mineralization A. Matvienko et al. 10.1134/S1064229323600124
- Microbial properties in tropical montane forest soils developed from contrasting parent material—An incubation experiment L. Kidinda et al. 10.1002/jpln.202100274
- Linking long-term soil phosphorus management to microbial communities involved in nitrogen reactions R. O’Neill et al. 10.1007/s00374-022-01627-y
- Enabling FAIR data in Earth and environmental science with community-centric (meta)data reporting formats R. Crystal-Ornelas et al. 10.1038/s41597-022-01606-w
- Practical Guide to Measuring Wetland Carbon Pools and Fluxes S. Bansal et al. 10.1007/s13157-023-01722-2
- Soil contamination by diesel fuel destabilizes the soil microbial pools: Insights from permafrost soil incubations O. Masyagina et al. 10.1016/j.envpol.2023.121269
- Copper Bioavailability and Leaching in Conventional and Organic Viticulture under Environmental Stress E. Jez et al. 10.3390/app13042595
- Patterns and drivers of organic matter decomposition in peatland open-water pools J. Arsenault et al. 10.5194/bg-21-3491-2024
- Microbial soil quality indicators depending on land use and soil type in a semi-arid dryland in Kenya K. Mganga et al. 10.1016/j.ejsobi.2024.103626
- Projected soil carbon loss with warming in constrained Earth system models S. Ren et al. 10.1038/s41467-023-44433-2
- Effect of Mineral Nitrogen and Glucose Application on Temperature Sensitivity (<i>Q</i><sub>10</sub>) of Mineralization of Soil Organic Matter А. Matvienko et al. 10.31857/S0032180X22601281
Latest update: 05 Jul 2025
Short summary
Carbon loss to the atmosphere via microbial decomposition is often assessed by laboratory soil incubation studies that measure greenhouse gases released from soils under controlled conditions. Here, we introduce the Soil Incubation Database (SIDb) version 1.0, a compilation of time series data from incubations, structured into a new, publicly available, open-access database of carbon dioxide and methane flux. We also provide guidance for database entry and the required variables.
Carbon loss to the atmosphere via microbial decomposition is often assessed by laboratory soil...
Altmetrics
Final-revised paper
Preprint