the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Organic matter cycling along geochemical, geomorphic, and disturbance gradients in forest and cropland of the African Tropics – project TropSOC database version 1.0
Sebastian Doetterl
Rodrigue K. Asifiwe
Geert Baert
Fernando Bamba
Marijn Bauters
Pascal Boeckx
Benjamin Bukombe
Georg Cadisch
Matthew Cooper
Landry N. Cizungu
Alison Hoyt
Clovis Kabaseke
Karsten Kalbitz
Laurent Kidinda
Annina Maier
Moritz Mainka
Julia Mayrock
Daniel Muhindo
Basile B. Mujinya
Serge M. Mukotanyi
Leon Nabahungu
Mario Reichenbach
Boris Rewald
Johan Six
Anna Stegmann
Laura Summerauer
Robin Unseld
Bernard Vanlauwe
Kristof Van Oost
Kris Verheyen
Cordula Vogel
Florian Wilken
Peter Fiener
Download
- Final revised paper (published on 25 Aug 2021)
- Supplement to the final revised paper
- Preprint (discussion started on 23 Apr 2021)
- Supplement to the preprint
Interactive discussion
Status: closed
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RC1: 'Comment on essd-2021-73', yao zhang, 19 May 2021
The authors described the open-access database TropSOC 1.0. It is very well written and provided enough details about the data, its experimental design, rationale, references for protocols, and availability of the data. I am very excited to see this database is available for the research community and appreciate the effort of the authors and other supporting personnel. As the authors stated that such data are rare for African tropical regions, I believe this data set is very valuable. I think the manuscript can be accepted with only a few minor changes.
Specific comments:
1. Line 663. It is better to have the full names for CGIAR-IITA and CGIAR-ICRAF
2. The values in the csv files in the database are semi-colon delimited instead of using commas. Is there any reason? The standard csv files use comma and can be populated into columns when they are opened by Microsoft Excel.
3. I found the dates of the sampling are not in the database. For example, the harvest date of biomass. I believe the date is important for some potential users of the database. Maybe these data can be added in the next version of the database.
4. In the "Sample availability" section, the authors mentioned the sample of soils and biomass are stored but did not indicate if they are available for researchers outside the group and the policy for sharing these samples.
Citation: https://doi.org/10.5194/essd-2021-73-RC1 -
AC1: 'Reply on RC1', Sebastian Doetterl, 13 Jun 2021
Dear Dr Yao Zhang,
We would like to give a brief answer the questions and comments you raised and also how we intend to modify the manuscript and database in response. Besides the revised manuscript, we will also prepare an update on our database (v.1.1) based on the reviewer suggestions and corrections.
General Assessment
“The authors described the open-access database TropSOC 1.0. It is very well written and provided enough details about the data, its experimental design, rationale, references for protocols, and availability of the data. I am very excited to see this database is available for the research community and appreciate the effort of the authors and other supporting personnel. As the authors stated that such data are rare for African tropical regions, I believe this data set is very valuable. I think the manuscript can be accepted with only a few minor changes. “
Our response: Many thanks for the review and we are happy to see that we could satisfy your expectations for the quality of the submitted manuscript and data and are thankful for acknowledging the potential of our database.
Specific comments
- Line 663. It is better to have the full names for CGIAR-IITA and CGIAR-ICRAF
Our response: Thank you. We will spell out the full name of the two CGIAR branches in full upon first appearance in the manuscript in line 663.
- The values in the csv files in the database are semi-colon delimited instead of using commas. Is there any reason? The standard csv files use comma and can be populated into columns when they are opened by Microsoft Excel.
Our response: We decided to choose semi-colons since some languages use commas to indicate also the start of decimal positions instead of the decimal point. Since semi-colons are not used in such a conflicting way, we decided to stick to those to allow our data to be sorted in columns.
- I found the dates of the sampling are not in the database. For example, the harvest date of biomass. I believe the date is important for some potential users of the database. Maybe these data can be added in the next version of the database.
Our response: We have revisited and amended all datafiles that did not contain the data of sampling/harvesting. Specifically, the missing information was added to the following files and the database at the GFZ repository updated accordingly: 12_sample_identifier.csv; 311_biomass.csv; 218_root_biomass.csv; 241_pu_inventory.csv; 331_pu_inventory.csv
- In the "Sample availability" section, the authors mentioned the sample of soils and biomass are stored but did not indicate if they are available for researchers outside the group and the policy for sharing these samples.
Our response: Thanks for pointing this out to us. We have added the following sentences to this section: “As long as idle sample mass remains available, samples for independent research and to stimulate collaboration with the CBO network and the TropSOC project group are available upon request. The authors cannot guarantee to revisit the study sites in order to provide additional sample material in future campaigns. Samples will be given to researchers free of charge. Sample preparation and transport are subject to a handling fee.”
We hope we could address all comments to your satisfaction.
Yours sincerely,
the authors.
Citation: https://doi.org/10.5194/essd-2021-73-AC1
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AC1: 'Reply on RC1', Sebastian Doetterl, 13 Jun 2021
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RC2: 'Comment on essd-2021-73', Rose Abramoff, 27 May 2021
This ESSD manuscript provides a complete description of the TropSOC V1.0 database, which is to my knowledge the most detailed collection of measurements focusing on tropical central Africa. Measurement methods are well described and cited, and the database structure is also clearly explained. Many of these measurements would be directly useful to researchers working in the region, or who would conduct larger-scale synthesis or modeling studies. The data files are well structured with good meta-data and therefore I would recommend ESSD to publish this manuscript.
If I had one recommendation for future versions of TropSOC, it would be that elemental analysis of plant tissues would be useful to modelers as a complement to the growth and biomass measurements, such as the %C and N of litter and root biomass, for example. The elemental analysis of soil and parent material is impressive, and I understand that soils are the main focus of the current study.
Minor edits:
L121-122: Seemed like you meant to say “a decrease in biomass productivity”. The second half of this sentence is a little hard to understand – negative like lower activity?
L159-163: This sentence is a bit unwieldy – can it be condensed or broken into two sentences?
L280: Typo “Overview of plots”
L496: Typo “were used for yet more detailed”
Typo in PDF of “252_microbiology.pdf” (the .csv is all good): plot_ID and sample_ID should be plotID and sampleID
Citation: https://doi.org/10.5194/essd-2021-73-RC2 -
AC2: 'Reply on RC2', Sebastian Doetterl, 13 Jun 2021
Dear Dr Rose Abramoff,
We would like to give a brief answer the questions and comments you raised and also how we intend to modify the manuscript and database in response. Besides the revised manuscript, we will also prepare an update on our database (v.1.1) based on the reviewer suggestions and corrections.
General Assessment
“This ESSD manuscript provides a complete description of the TropSOC V1.0 database, which is to my knowledge the most detailed collection of measurements focusing on tropical central Africa. Measurement methods are well described and cited, and the database structure is also clearly explained. Many of these measurements would be directly useful to researchers working in the region, or who would conduct larger-scale synthesis or modeling studies. The data files are well structured with good meta-data and therefore I would recommend ESSD to publish this manuscript.”
Our response: Many thanks for the review and we are happy to see that we could satisfy your expectations for the quality of the submitted manuscript and data and are thankful for acknowledging the potential of our database. We are delighted to hear that you think that our data is useful for large scale modeling or synthesis efforts since this was one of our core intentions with the publication of this data.
“If I had one recommendation for future versions of TropSOC, it would be that elemental analysis of plant tissues would be useful to modelers as a complement to the growth and biomass measurements, such as the %C and N of litter and root biomass, for example. The elemental analysis of soil and parent material is impressive, and I understand that soils are the main focus of the current study.”
Our response: Thank you very much for this comment. We are actually working to complete CN data from vegetation samples right now. Due to the large volume and workload related to this (our litter data was collected every two weeks, root data seasonally) we have not completed this task yet and are delayed due to Covid-19 related restrictions on the ground in our partner institutions, but also in our own laboratories. Once the situation improved, we will create an updated version of our database where we will add this data as 2 new files “224_VegetationCN.csv” and “334_VegetationCN.csv” to the database in the GFZ repository. In these files we will report averaged values (at the plot and sample ID level) for litter and fine root samples (which drive the C input in soils), aggregated to a seasonal time resolution. Note that for forest sites, CN values from sampled fresh canopy leaves are already available in files “213_fresh_leaves.csv” and “214_fresh_leaves_agg.csv” in the current version.
Specific comments
L121-122: Seemed like you meant to say “a decrease in biomass productivity”. The second half of this sentence is a little hard to understand – negative like lower activity?
Our response: We amended the sentence in the following way: …plants leading to a decrease in biomass productivity (Veldkamp et al. 2020) and degraded tropical forests, lowering also microbial activity in soils (Sahani & Behera, 2001).
L159-163: This sentence is a bit unwieldy – can it be condensed or broken into two sentences?
Our response: We amended the sentence in the following way: “Improving our process understanding on the coupling between soil biogeochemistry and plant responses in the context of tropical land use changes will help to better constrain plant-soil interactions in ecosystem and land surface models. Furthermore, insights in plant- soil interactions can help to better inform policy makers and stakeholders in improving land management practices.”
L280: Typo “Overview of plots”
Our response: Corrected, thanks!
L496: Typo “were used for yet more detailed”
Our response: Corrected, thanks!
Typo in PDF of “252_microbiology.pdf” (the .csv is all good): plot_ID and sample_ID should be plotID and sampleID
Our response: Corrected, thanks!
We hope we could address all comments to your satisfaction.
Yours sincerely,
the authors.
Citation: https://doi.org/10.5194/essd-2021-73-AC2
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AC2: 'Reply on RC2', Sebastian Doetterl, 13 Jun 2021