Thomas M. Jordan, Giorgio Dall'Olmo, Gavin Tilstone, Robert J. W. Brewin, Francesco Nencioli, Ruth Airs, Crystal S. Thomas, and Louise Schlüter
In situ measurements of particulate inherent optical properties (IOPs) – absorption (ap(λ)), scattering (bp(λ)), and beam attenuation (cp(λ)) – are crucial for development of optical algorithms that retrieve biogeochemical quantities such as Chlorophyll a, particulate organic carbon (POC) and total suspended matter (TSM). Here we present a compilation of particulate absorption-attenuation spectrophotometric data measured underway on nine Atlantic Meridional Transect (AMT) cruises between 50° north to 50° south from 2009–2019. The compilation includes co-incident high performance liquid chromatography (HPLC) phytoplankton pigment concentrations, which are used to calibrate transects of Total Chlorophyll a (Tot_Chl_a) concentrations derived from the ap(λ) line-height method. The IOP data are processed using a consistent methodology, and include propagated uncertainties for each IOP variable, uncertainty quantification for the Tot_Chl_a concentrations based on HPLC match-ups, application of consistent set of quality-control filters, and standardisation of output data fields and formats. The total IOP dataset consists of ~310,000 measurements at a 1 minute binning (~270,000 hyper-spectral) and > 700 co-incident HPLC pigment surface samples (~600 of which are coincident with hyper-spectral IOPs). We present geographic variation in the IOPs, HPLC phytoplankton pigments, and the ap-derived Tot_Chl_a concentrations, which are shown to have uncertainties between 8–20 %. Additionally, to stimulate further investigation of accessory pigment extraction from ap(λ), we quantify pigment correlation matrices and identify spectral characteristics of end-member ap(λ) spectra where accessory pigment groupings are present in higher concentrations relative to Tot_Chl_a. All data are made publicly available in SeaBASS and NetCDF formats via the following links: https://seabass.gsfc.nasa.gov/archive/PML/AMT, and https://doi.org/10.5281/zenodo.12527954.
Received: 28 Jun 2024 – Discussion started: 15 Jul 2024
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Thomas M. Jordan, Giorgio Dall'Olmo, Gavin Tilstone, Robert J. W. Brewin, Francesco Nencioli, Ruth Airs, Crystal S. Thomas, and Louise Schlüter
Data sets
SeaBASS archive for: `Surface inherent optical properties and phytoplankton pigment concentrations from the Atlantic Meridional Transect (2009 - 2019)'
Thomas M. Jordan, Giorgio Dall’Olmo, Gavin Tilstone, Robert J. W. Brewin, Francesco Nencioli, Ruth Airs, Crystal S. Thomas, and Louise Schlüter
https://seabass.gsfc.nasa.gov/archive/PML/AMT
Surface inherent optical properties and phytoplankton pigment concentrations from the Atlantic Meridional Transect (2009 - 2019): NetCDF format
Thomas M. Jordan, Giorgio Dall’Olmo, Gavin Tilstone, Robert J. W. Brewin, Francesco Nencioli, Ruth Airs, Crystal S. Thomas, and Louise Schlüter
https://zenodo.org/records/12527954
Model code and software
AMT IOP processing code
Giorgio Dall’Olmo, Thomas M. Jordan, and Francesco Nencioli
https://github.com/tjor/AMT19_underway
AMT IOP processing code
Giorgio Dall’Olmo, Thomas M. Jordan, and Francesco Nencioli
https://github.com/tjor/AMT22_underway
AMT IOP processing code
Giorgio Dall’Olmo, Thomas M. Jordan, and Francesco Nencioli
https://github.com/tjor/AMT23_underway
AMT IOP processing code
Giorgio Dall’Olmo, Thomas M. Jordan, and Francesco Nencioli
https://github.com/tjor/AMT24_underway
AMT IOP processing code
Giorgio Dall’Olmo, Thomas M. Jordan, and Francesco Nencioli
https://github.com/tjor/AMT25_underway
AMT IOP processing code
Giorgio Dall’Olmo, Thomas M. Jordan, and Francesco Nencioli
https://github.com/tjor/AMT26_underway
AMT IOP processing code
Giorgio Dall’Olmo, Thomas M. Jordan, and Francesco Nencioli
https://github.com/tjor/AMT27_underway
AMT IOP processing code
Giorgio Dall’Olmo, Thomas M. Jordan, and Francesco Nencioli
https://github.com/tjor/AMT28_underway
AMT IOP processing code
Giorgio Dall’Olmo, Thomas M. Jordan, and Francesco Nencioli
https://github.com/tjor/AMT29_underway
Thomas M. Jordan, Giorgio Dall'Olmo, Gavin Tilstone, Robert J. W. Brewin, Francesco Nencioli, Ruth Airs, Crystal S. Thomas, and Louise Schlüter
Metrics will be available soon.
Latest update: 15 Jul 2024