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  <front>
    <journal-meta><journal-id journal-id-type="publisher">ESSD</journal-id><journal-title-group>
    <journal-title>Earth System Science Data</journal-title>
    <abbrev-journal-title abbrev-type="publisher">ESSD</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Earth Syst. Sci. Data</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1866-3516</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/essd-13-4621-2021</article-id><title-group><article-title>Long-term phenological data set of multi-taxonomic groups, agrarian
activities, and abiotic parameters<?xmltex \hack{\break}?> from Latvia, northern Europe</article-title><alt-title>Multi-taxonomic phenological data set from Latvia​​​​​​​</alt-title>
      </title-group><?xmltex \runningtitle{Multi-taxonomic phenological data set from Latvia​​​​​​​}?><?xmltex \runningauthor{G. Kalv\={a}ne et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Kalvāne</surname><given-names>Gunta</given-names></name>
          <email>gunta.kalvane@lu.lv</email>
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Kalvāns</surname><given-names>Andis</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-1818-746X</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname><?xmltex \nametranspose{\c}?>Ģērmanis</surname><given-names>Andris</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>Faculty of Geography and Earth Sciences, University of Latvia, Jelgavas street 1, 1002, Riga, Latvia</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Rīga State Gymnasuim No.2., Kr. Valdemara Street 1, 1010, Riga, Latvia​​​​​​​</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Gunta Kalvāne (gunta.kalvane@lu.lv)</corresp></author-notes><pub-date><day>29</day><month>September</month><year>2021</year></pub-date>
      
      <volume>13</volume>
      <issue>9</issue>
      <fpage>4621</fpage><lpage>4633</lpage>
      <history>
        <date date-type="received"><day>12</day><month>November</month><year>2020</year></date>
           <date date-type="rev-request"><day>17</day><month>March</month><year>2021</year></date>
           <date date-type="rev-recd"><day>26</day><month>July</month><year>2021</year></date>
           <date date-type="accepted"><day>25</day><month>August</month><year>2021</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2021 Gunta Kalvāne et al.</copyright-statement>
        <copyright-year>2021</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://essd.copernicus.org/articles/13/4621/2021/essd-13-4621-2021.html">This article is available from https://essd.copernicus.org/articles/13/4621/2021/essd-13-4621-2021.html</self-uri><self-uri xlink:href="https://essd.copernicus.org/articles/13/4621/2021/essd-13-4621-2021.pdf">The full text article is available as a PDF file from https://essd.copernicus.org/articles/13/4621/2021/essd-13-4621-2021.pdf</self-uri>
      <abstract><title>Abstract</title>
    <p id="d1e108">A phenological data set collected by citizen scientists from 1970 to 2018 in
Latvia is presented, comprising almost 47 000 individual observations of
eight taxonomical groups, in addition to agrarian activities and abiotic
parameters, covering in total 159 different phenological phases. These
original data published offline in annual issues of the Nature and History
Calendar (in Latvian, <italic>Dabas un vēstures kalendārs</italic>) have been digitized, harmonized, and geo-referenced.</p>
    <p id="d1e114">Overall, the possible use of such data is extensive, as phenological data
are excellent bioindicators for characterizing climate change and can be
used for the elaboration of adaptation strategies in agriculture, forestry,
and environmental monitoring. The data can also be used in
cultural–historical research; for example, the database includes data on
sugar beet and maize, the cultivation of which was imposed on collective
farms during the Soviet period. Thus, such data are not only important in
the Earth sciences but can also be applied to the social sciences.</p>
    <p id="d1e117">The data significantly complement current knowledge on European phenology,
especially regarding northern regions and the temporal biome. The data here
cover two climate reference periods (1971–2000; 1981–2010), in addition to
more recent years, and are particularly important in monitoring the effects
of climate change. The database can be considered the largest open
phenological data set in the Baltics.</p>
    <p id="d1e120">The data are freely available to all interested at <ext-link xlink:href="https://doi.org/10.5281/zenodo.3982086" ext-link-type="DOI">10.5281/zenodo.3982086</ext-link> (Kalvāne et al., 2020).</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d1e135">From the relatively narrow study of natural rhythms, phenology has developed
into an interdisciplinary field of science, the application of which is
constantly expanding. Phenological data are important for agriculture,
forestry (Peñuelas et al., 2009), understanding
ecological processes (Walther et al., 2002), human
health (Dierenbach et al., 2013)
(knowledge of allergen flowering times and implementation of early warning
and monitoring systems can protect those affected by pollinosis and reduce
economic losses due to illness), tourism, and education
(Kalvāne, 2011), and on-site phenological observations are
used as ground truth for satellite data calibration
(Nagai et al., 2018). Additionally, phenological data are increasingly being used as bioindicators of climate change (Jochner
and Menzel, 2015; Menzel et al., 2020; Ovaskainen et al., 2013).</p>
      <p id="d1e138">The oldest phenological data series in Europe dates back to 1354 and holds
the dates of grape harvest in Beaube, Burgundy, France
(Labbé et al., 2019), as well as
data from 15th century France and Austria
(Schleip et al., 2008). The earliest known
data collection in the Baltic region, although fragmentary in nature, dates
back to the 17th century, obtained by reconstructing the date of the
rye harvest in Estonia (Ahas, 2008). In Lithuania and Estonia,
more systematic observations have been undertaken in botanical gardens: when
the Botanical Garden of Vilnius University was founded in Lithuania in 1782
(Romanovskaja and Baksiene, 2008) and<?pagebreak page4622?> in 1865 with the founding
of the Botanical Garden of the University of Tartu in Estonia
(Ahas, 2008). In Russia, a network of volunteer observers was
established in 1848, when the Russian Geographical Association distributed a
questionnaire to the scientific community, including schoolteachers
(Ovaskainen et al., 2013). Fragmentary data on
phenology in the territory of present-day Latvia can be found in the
collections of German clergies, as well as in the mid-19th century
collections of articles of the Riga Society of Nature Researchers (in
German, <italic>Naturforscher-Verein zu Rīga</italic>; in Latvian, <italic>Rīgas Dabaspētnieku biedrība</italic>). Systematic networks of voluntary observers across the Baltic states were established in the 1920s
(Ahas, 2008; Grišule and Briede, 2008;
Romanovskaja and Baksiene, 2008) and have, with varying success and changes
in the maintainers of the data, continued to operate to this day, continuing
the development an extremely valuable database.</p>
      <p id="d1e147">Here we have described the significance of phenological data and the history
of phenology in Latvia. We have evaluated the quality and reliability of the
phenological data, describing the methods of data quality assessment and the
structure of the database in detail. We have outlined the potential for its
use in climate change research as an example of seasonal, chronological
analysis (phenological calendar method) and long-term and annual fluctuation
assessment. The presented data cover a period of almost 50 years, including
not only plant phenology, but also animal, insect, and fungal phenology, as well
as agrarian seasonal practices and abiotic parameters such as first snow,
frost, and ice melting.</p>
      <p id="d1e150">The goal of the publication is to (1) contribute to open data and science in
the field of phenology, (2) outline the possible applications of the
phenological data set, and (3) provide insight into the development of
phenology in Latvia. The data set include 159 phenological phases over 1971 to
2018 for eight taxonomic groups, as well as abiotic and agrarian phenomena
that can be attributed to a temporal biome in northern Europe.</p>
      <p id="d1e154">The greatest value of our data is the large number (159) of reported
phenological occurrences, which allows one to not only fully characterize
the annual seasonal developments across the Latvian landscape, but also
analyse long-term changes, mainly in the context of climate change. It is
important to note that the data are not only useful for the Earth sciences,
but they also have societal value. Agrarian observations allow one to gain
insight into cultural and historical events: for example, the database
contains data on the initiation of grazing in Latvia. Historically, the
first cattle grazing after the long winter (Latvia has 96 to 155 d frost
days annually; Avotniece et al., 2017) was a significant
event, which was celebrated by entertainment like traditional water fights
(<italic>rumulēšanās</italic> in Latvian). Along with changes in agricultural practices, such events were
no longer recorded. During the Soviet period, volunteer observers recorded
maize (<italic>Zea mays</italic>) and sugar beet (<italic>Beta vulgaris</italic>) phenology, which had previously not been
cultivated often in Latvia and were in a way “imposed”. Observations of
maize and sugar beet were recorded over 1970 to 1976. The publication takes
an expanded look at the application of data in the Earth sciences.</p>
      <p id="d1e166">The phenological data described here are available in the Zenodo data
repository at <ext-link xlink:href="https://doi.org/10.5281/zenodo.3982086" ext-link-type="DOI">10.5281/zenodo.3982086</ext-link> (Kalvāne et al., 2020) and integrated into the common European phenological database PEP725 (Pan European Phenology Project) (Templ et al., 2018).</p>
</sec>
<sec id="Ch1.S2">
  <label>2</label><title>Methods</title>
<sec id="Ch1.S2.SS1">
  <label>2.1</label><title>Data source</title>
      <p id="d1e187">The original paper publication of the data set can be found in the Nature
and History Calendar yearbooks (in Latvian, <italic>Dabas un vēstures kalendārs</italic>; Fig. 1), from 2005 in Nature
and History (in Latvian <italic>Daba un vēsture</italic>) and from 2014 in the Yearbook of [the] Latvian
Newspaper (in Latvian, <italic>Latvijas Avīzes Gadagrāmata</italic>), where the phenological observations from the last year
are presented. The original data source is volunteer observations (Fig. 2).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><?xmltex \currentcnt{1}?><?xmltex \def\figurename{Figure}?><label>Figure 1</label><caption><p id="d1e201">Example of the original paper publication of phenological
observations for spring 1973 in the 1974 issue of the Nature and History
Calendar yearbook (in Latvian, <italic>Dabas un vēstures kalendārs</italic>; “Nature and History Calendar, 1974”, the
National Library of Latvia, copyright owner unknown).</p></caption>
          <?xmltex \igopts{width=497.923228pt}?><graphic xlink:href="https://essd.copernicus.org/articles/13/4621/2021/essd-13-4621-2021-f01.jpg"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><?xmltex \currentcnt{2}?><?xmltex \def\figurename{Figure}?><label>Figure 2</label><caption><p id="d1e215">Excerpt from the notes made by voluntary observer Leontīna
Pelše in Lazdona, in autumn of 2012.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://essd.copernicus.org/articles/13/4621/2021/essd-13-4621-2021-f02.jpg"/>

        </fig>

      <p id="d1e225">With a varying degree of success, and along with changes of the data
maintainers, this network of volunteer observers has been operating since
1927, with interruptions during World War II. In this publication we have
collected phenological data, digitizing them from the above-mentioned
sources for the last two climatic reference periods (1971–2000,
1981–2010), as well as for more recent years, which are especially
important for monitoring the effects of climate change.</p>
      <p id="d1e228">The largest number of observation points or stations (34) and the largest
number of observations (3107) were recorded in 1976. More recently,
observations were only taken at 7–10 points. Observations are published
annually in the yearbook regarding about 70–110 different phenological
phases, covering different taxonomic groups, as well as abiotic and agrarian
phenomena. In this data source (Nature and History Calendar), the starting
dates or first occurrence in the observation area of a given phenomenon are
usually fixed. They are grouped by season: spring, summer, and autumn.</p>
      <p id="d1e231">In total, the database contains almost 47 000 records of 159 different
phenological phases from 103 observation points (Fig. 4). Observations of
the same phenological phase from the same location are considered a single
data series. According to this definition, there are 7892 data series.
However, there are only 1980 data series with 10 or more yearly
observations.</p>
      <p id="d1e234">The table in the image shows phenological observations recorded in different
locations (1. Vērgale, 2. Aizpute … 26. Visķi, 27. Šķaune);
in the header row phenological phases are mentioned: first individuals –
starlings (in Latvian, <italic>atlido strazdi</italic>) and so on.</p>
      <p id="d1e240">Leontīna Pelše generally described autumn as follows (handwriting text below
the table):<disp-quote>
  <p id="d1e244">autumn is wet and rainy, without Indian summer. Harvest is
good. A lot of berries and nuts. Often thunderstorm, hail. The first snow
was on 26 October, 23.4 cm. 28 October: first river ice. 30 October: Air
temperature during night <inline-formula><mml:math id="M1" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>9 <inline-formula><mml:math id="M2" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C.</p>
</disp-quote></p>
      <p id="d1e264">The coordinates of the administrative units (village or town) were recorded
as the location of the reported observations; it is evident that these were
not the exact locations of actual observations. The locations of the
observations were coded by the village or town name.</p>
      <p id="d1e268">The dates were entered into an Excel spreadsheet following the format of the
original publication, with each sheet including the year of observations;
the data set was further processed in R (R Core Team, 2019). We
have coded the phytophenological phases according to the Biologische Bundesanstalt Bundessortenamt and Chemical Industry (BBCH) scale
(Meier et al., 2001). For the
start of crop sowing, we assigned code BBCH00 (Dry seed, innate or enforced
dormancy, tuber not sprouted); however, the sowing date is usually the end
date of this phase rather than starting date.</p>
</sec>
<?pagebreak page4623?><sec id="Ch1.S2.SS2">
  <label>2.2</label><title>Quality control</title>
      <p id="d1e279">A multi-step quality control procedure for the presented data set was
adopted. There are two main sources of possible errors in the data set: (1) errors related to the digitization of the paper publications and (2) errors
related to observations, processing, and publication in the original source.
If identified, the errors of the first type were corrected manually. The
presence of the second type of errors can only be inferred from internal
inconsistencies of impossible or implausible values of reported
observations. When such internal inconsistencies were identified, the values
were flagged in the final data set, but not eliminated. The user of the data
set can themselves decide to exclude such flagged values. The following
error screening procedure, similar to that used by Rutishauser et al. (2019), was used.
<list list-type="order"><list-item>
      <p id="d1e284"><italic>Test 1</italic>. Global outlier identification was applied if at least four observations
of the given phase in a given year were available; 98.4 % of all
observations met this criterion. At first, deviation of each observation
from the median value (<inline-formula><mml:math id="M3" display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>med-dev</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>) for the given year and phenological
phase for all stations was calculated. Then, the phenophase specific
standard deviation (SD<inline-formula><mml:math id="M4" display="inline"><mml:msub><mml:mi/><mml:mtext>med-dev</mml:mtext></mml:msub></mml:math></inline-formula>) of the differences between yearly median (<inline-formula><mml:math id="M5" display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>med-dev</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>) and actual observation for all years and stations combined was calculated. All observations deviating from the yearly median by more than 4 standard deviations <inline-formula><mml:math id="M6" display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>med-dev</mml:mtext></mml:msub><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:math></inline-formula> SD<inline-formula><mml:math id="M7" display="inline"><mml:msub><mml:mi/><mml:mtext>med-dev</mml:mtext></mml:msub></mml:math></inline-formula> were double
checked against the original publication and corrected if necessary. After
that, the remaining observations not passing Test 1 were individually
considered by authors and, if so decided, flagged as implausible. After
manual correction of typing errors, only 16 observations were flagged by
Test 1 and only four of these observations were flagged as implausible
according to expert judgement (Fig. 3).</p></list-item><list-item>
      <p id="d1e345"><italic>Test 2</italic>. Local outlier identification was carried out for series where there are more than 10 observations for a given phenological phase (65 % of all
observations). Observations that deviated from the station median of the
given phenological phase by more than 3 standard deviations were flagged and
double checked for typing errors against the original paper publication.
After error correction, 94 observations were flagged by Test 2, and nine of
those were flagged as implausible according to expert judgement (Fig. 3).</p></list-item><list-item>
      <p id="d1e351"><italic>Test 3</italic>. This test examines the impossible order of phenological phases.
Certain phenological phases must follow a strict order; e.g. fruiting
(BBCH87) can take place only after flowering (BBCH61). We defined two lines
of phase order: vegetative and generative. We checked these for each
species, station, and year. A special case is the development of winter
cereals: it is normal that sowing and emergence take place in the autumn,
after the onset of the spring and summer development phases. Therefore, the
arbitrary code “ReassumedGrowth” instead of regular BBCH is assigned as
the first number in spring development. In Test 3 we were able to<?pagebreak page4625?> consider
only 9214 or 19.6 % of all observations. Of those, only 14 (0.15 %)
failed this test and were marked both as “Wrong order” and “Implausible”
(Fig. 3).</p></list-item></list>
The questionable observations identified in Test 1 and Test 2 were evaluated
by experts (the authors of this publication) and were flagged as
implausible if considered unrealistic. Test 1 and Test 2 were reiterated
after excluding implausible values. In total, only 43 observations (less
than 0.1 % of the data set) were flagged as implausible.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><?xmltex \currentcnt{3}?><?xmltex \def\figurename{Figure}?><label>Figure 3</label><caption><p id="d1e359">Association between Test 1 (standard deviation from yearly median
of the given phase) and Test 2 (standard deviation from station median of
the given phase); black lines indicate thresholds of 4 (Test 1) or 3
(Test 2) standard deviations.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://essd.copernicus.org/articles/13/4621/2021/essd-13-4621-2021-f03.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><?xmltex \currentcnt{4}?><?xmltex \def\figurename{Figure}?><label>Figure 4</label><caption><p id="d1e370">Site and observation point locations and quantity of available
data; duration given in years.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://essd.copernicus.org/articles/13/4621/2021/essd-13-4621-2021-f04.png"/>

        </fig>

</sec>
<sec id="Ch1.S2.SS3">
  <label>2.3</label><title>Temporal trends</title>
      <p id="d1e387">In the presented data set, the time series from individual observation
locations are rather short. There are indications in the literature that a
shift in meteorological conditions in the Baltic region occurred around 1990
(Apsīte et al., 2013; Jaagus et al., 2017).
Similar Europe-wide changes to earlier spring phenology starting from 1988
were reported by Wu et al. (2016).
However, to gain insight into the temporal phenological trends, we
sub-selected series that match two criteria: (1) at least four observations
before 1987 and (2) at least four observations after 1992. This ensures that
data points from either side of 1990 are included. Further, we calculated a
simple linear trend for each station-phase time series and aggregated them
along the lines of major phase groups: start of leaf unfolding (BBCH11),
flowering (BBCH61), ripening (BBCH83-87) and plant senescence (BBCH92-93), and
first arrival and departure of migratory birds, in addition to abiotic and
agrarian phenological phases.</p>
</sec>
<sec id="Ch1.S2.SS4">
  <label>2.4</label><title>Phenological calendar</title>
      <p id="d1e398">The overview of the most observed phenological phases and their arrangement
can be presented as a phenological calendar. We selected only phases with more
than 500 observations, arranged them by the average reported date of phase
onset and presented them as a boxplot. The box plot was supplemented with
a relative number of yearly observations indicated by density plot. The
phenological calendar includes data on 46 phenological phases, arranged in
chronological order by the median values.</p>
</sec>
</sec>
<sec id="Ch1.S3">
  <label>3</label><title>Results</title>
<sec id="Ch1.S3.SS1">
  <label>3.1</label><title>The history of phenology in Latvia – a brief overview</title>
      <p id="d1e417">For Latvia, fragmentary phenological data can be found in certain regions in
the diaries of clergy (Jansons, 1929; Kalvāne, 2011)
from the beginning of the 19th century. The first data on
the phenology of birds, bees, and crops were published in 1866 in Terbata
(now Tartu, Estonia) in Korrespondenzblatt der Naturforscher-Vereins zu Riga
(Naturforscher-Vereins zu Riga, 1867). In the beginning of the
20th century, the text “Nature phenomena in annuals changes” by
Jessens (1920) on the Vidzeme and Kurzeme areas was published
with encouragement for people “to observe nature and to diligently record
information about plants (budding, flowering) and insects and other animals
(awakening, appearance), birds (arrival), as well as to take notes on ice
moving in rivers, the first thunder, etc.”.</p>
      <p id="d1e420">The network of systematic observations was established in 1927 under the
leadership of the Meteorological Institute of the University of Latvia.
Guidelines for observations were developed for the primary research
objective of “closer links between plant distribution and meteorological
phenomena and provision of results that support conclusions based on
meteorological data” as phenological data were seen as complementary to a
region's climatic information (Jansons, 1929). The guidelines
also stated that “it is also important that the observation includes
plants that are indeed well-known, which are related to some other
interests, including some quite practical ones, and such that can be
observed, one could say, right before the eyes” (Jansons,
1929). It should be noted that the guidelines have not changed significantly
over time. The text “Phenological Observations in Latvia” was published until
1935. Observations were taken at more than 70 different points, and this was
the largest observation network to operate in Latvia.</p>
      <p id="d1e423">Phenological data for the 1940s and 1950s were summarized in the
publications of Zirnītis (1956) as the average period
values, without indicating the sources of the obtained data, which might
have been for political reasons. Information is lacking about the maintainer
of data during this period.</p>
      <p id="d1e426">After World War II the network of phenological observations was renewed by
the Hydrometeorological Service. Observations about crops and wildlife were
taken at 20 meteorological stations and 20 posts. The obtained data were
used for agricultural purposes. Since the establishment of the Phenological
Commission of the Geographical Society of the Latvian Soviet Socialist
Republic in 1959, a network of public correspondents and phenologists has
operated the Society (Sproǵe, 1979). Since 1971, phenological
data have also been published annually in the Nature and History Calendar,
which have been digitized as part of the study.</p>
      <p id="d1e430">In recent years (since 1999) the phenological network has been voluntarily
coordinated by the co-author, Andris <?xmltex \transpose{\c}?>Ģērmanis, continuing to send observation
questionnaires, data forms (Fig. 2), and publications of the Nature and
History Calendar, and from 2014, of the Yearbook of [the] Latvian Newspaper
Voluntary. Observers and phenologists annually record more than 200 different
phenological phases: the development of 23 types of trees (from leaf budding
to the beginning of leaf-fall), the flowering phase of 52 plants,
migration of 14 migratory birds, ripening phase for 7 plants,
characterization of 7 crops (from sowing to harvest), 11 zoo-phenological
phenomena, and 13 economic activities, as well as the so-called inanimate
phenomena such as ice moving and the first snow (statistics from the
observation templates of recent years). A selected subset of the submitted
data have been published in the Nature and History Calendar.</p>
      <?pagebreak page4626?><p id="d1e435">In parallel with the traditional network of volunteer observers, natural
observations in Latvia are recorded in the Dabasdati.lv portal, maintained
by the NGO Latvian Fund for Nature. A smartphone application is also
available that has significantly increased interest in nature observations.
For example, in the first 3 months of 2020, more than 34 000 observations
(16 000 with photographs) were recorded, mainly of birds as Latvia has a
long history of ornithology (Priedniece, 2020).
Ornithological data are published on the latvijasputni.lv online portal.</p>
</sec>
<sec id="Ch1.S3.SS2">
  <label>3.2</label><title>Description of phenological data (database structure, data
availability)</title>
<sec id="Ch1.S3.SS2.SSS1">
  <label>3.2.1</label><title>Database structure</title>
      <p id="d1e453">Digitized historical data of volunteer observers after data quality control
(see the section on methods) are combined in a database. The data are freely
available at <uri>https://zenodo.org</uri> (last access: 19 September 2021), <ext-link xlink:href="https://doi.org/10.5281/zenodo.3982086" ext-link-type="DOI">10.5281/zenodo.3982086</ext-link> (Kalvāne et al., 2020).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5" specific-use="star"><?xmltex \currentcnt{5}?><?xmltex \def\figurename{Figure}?><label>Figure 5</label><caption><p id="d1e464">An excerpt from the database showing the structure of the database.</p></caption>
            <?xmltex \igopts{width=497.923228pt}?><graphic xlink:href="https://essd.copernicus.org/articles/13/4621/2021/essd-13-4621-2021-f05.png"/>

          </fig>

      <p id="d1e473">The data are available at  <uri>https://doi.org/10.5281/zenodo.3982086</uri> (Kalvāne et al., 2020). The data fields are as follows (Fig. 5):
<list list-type="order"><list-item>
      <p id="d1e481">Station: observation station name;</p></list-item><list-item>
      <p id="d1e485">Year: year of observation;</p></list-item><list-item>
      <p id="d1e489">Season: season of observation as indicated in the primary publication;</p></list-item><list-item>
      <p id="d1e493">Taxonomic_group: taxonomic group of the species observed or
grouping of non-biological phases (“Abiotic” for meteorological phenomena
and “Agrarian” for agrarian activities);</p></list-item><list-item>
      <p id="d1e497">Species: English name of the species observed, or description of phenomena
observed in case of abiotic occurrences;</p></list-item><list-item>
      <p id="d1e501">Species_Latin: Latin name of the species observed;</p></list-item><list-item>
      <p id="d1e505">Phenophase: description of phenological phase observed;</p></list-item><list-item>
      <p id="d1e509">DoY: day of the year of the first observation of the phase;</p></list-item><list-item>
      <p id="d1e513">Date: date of the first observation of the phase;</p></list-item><list-item>
      <p id="d1e517">BBCH: attributed BBCH code for phenological phase observed, where applicable;</p></list-item><list-item>
      <p id="d1e521">Decimal_longitude: longitude of observation site as decimal
degrees;</p></list-item><list-item>
      <p id="d1e526">Decimal_latitude: latitude of observation site as decimal
degrees;</p></list-item><list-item>
      <p id="d1e530">Geodetic_datum: geodetic reference system (EPSG:4326; WGS 84;
World Geodetic System 1984);</p></list-item><list-item>
      <p id="d1e534">Wrong_order: flag indicating whether the order of the reported
phases of the same taxon at a given station and year is not realistic (TRUE)
or realistic (FALSE);</p></list-item><list-item>
      <p id="d1e538">Implausible: flag indicating the reported date of the phenological phase is
highly unrealistic (TRUE) or realistic (FALSE).</p></list-item></list></p>
</sec>
<?pagebreak page4627?><sec id="Ch1.S3.SS2.SSS2">
  <label>3.2.2</label><title>Phenological phases</title>
      <p id="d1e549">The database contains data on eight different taxonomic groups, as well as
on abiotic phenomena (first snow, snowmelt, ice moving, first thunder, first
and last frost) and agrarian activities (planting of seedlings, planting and
harvesting of potatoes, ploughing in autumn, etc.). However, it should be
noted that the largest data group is for plants (almost 70 %). The second
largest group is birds (11 %), followed by abiotic phenomena (8 %),
agricultural data (7 %), and insects (3 %). Other taxonomic groups
comprise less than 1 % (Fig. 6). From the taxonomic group of plants,
almost half of the observations are recorded about the flowering phase.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><?xmltex \currentcnt{6}?><?xmltex \def\figurename{Figure}?><label>Figure 6</label><caption><p id="d1e554">Number of observed phases and observations across taxonomic
groups; note that both axes are on the logarithmic scale.</p></caption>
            <?xmltex \igopts{width=312.980315pt}?><graphic xlink:href="https://essd.copernicus.org/articles/13/4621/2021/essd-13-4621-2021-f06.png"/>

          </fig>

      <p id="d1e563">The number of observations for individual phases ranged from 11 for the
beginning of flowering of the European ash (<italic>Fraxinus excelsior</italic>; BBCH61) to 743 for the
beginning of flowering of the common dandelion (<italic>Taraxacum officinale</italic>; BBCH61). Generally,
between 70 and 79 phases were reported up until 2002, while starting from
2003, between 101 and 107 phases were reported. The years 1971 and 1973 had
exceptionally low numbers of reported phases (46 and 51 respectively) while
1970 and 1976 had exceptionally higher numbers of reported phases (109 and
117 respectively). In recent years, for example, observations of the
flowering of the snowdrop (<italic>Galanthus</italic> <italic>nivalis</italic>) and the first mushrooms observed have been
published.</p>
      <p id="d1e579">The majority of volunteers note the first observed specimen/individual,
which is often the earliest value, rather than the average value specific to
the observation area, which is important to keep in mind when using these
data. According to one volunteer observer (<?xmltex \transpose{\c}?>Ģērmanis Agris, personal
communication, 2020), it usually takes another 2 to 3 d for other
specimens/individuals to reach the specified developmental stage reported in
the observations.</p>
      <p id="d1e584">Overall, the quality of the data can be assessed as high, as evidenced by
the very low proportion of observations that were determined to be
unrealistic. For example, data from the same source (Nature and History
Calendar) were successfully used to calibrate the initial model of the
budding and flowering of the bird cherry (<italic>Padus avium</italic>) and silver birch (<italic>Betula pendula</italic>; Kalvāns et al., 2015). The uncertainty of the model (2
to 4 d) was comparable to or higher than in other similar studies
(Siljamo et al., 2008).</p>
</sec>
<sec id="Ch1.S3.SS2.SSS3">
  <label>3.2.3</label><title>Data limitations</title>
      <p id="d1e601">When using the data, it is important to note that (1) the georeferencing was
approximate, (2) the observers record the first instance of the phenomenon, (3) most of the observations represent the spring phases, and (4) number of yearly<?pagebreak page4628?> observation points ranges from 7 to 10 in the 21st century to 34 in 1976.</p>
      <p id="d1e604"><list list-type="order">
              <list-item>

      <p id="d1e609">A significant shortcoming of the database, the lack of metadata, must be
mentioned; we only know the approximate location of observation points. The
coordinates of administrative units were taken as the location of the
reported observations, although it is evident that this is not the exact
location of the actual observation. However, the study region (Latvia) is on
the East European Plain with poorly articulated terrain and elevations not
exceeding 311 m above sea level; considering the relatively flat and
homogeneous territory, this should not have a major impact when analysing
data globally or regionally.</p>
              </list-item>
              <list-item>

      <p id="d1e615">As is common in an area of strong seasonality, the volunteer observers often
pay more attention to the spring phases and less to summer or autumn, which
may affect the data analysis, such as annual lengths or assumptions about
growth stages and length.</p>
              </list-item>
              <list-item>

      <p id="d1e621">Volunteers record the <italic>first</italic> appearance of the phenomena in the area. It is
possible that the significance of phenological trends has also been
influenced by the methodology of data collection. Voluntary observers do not
observe the specific individuals from year to year but record the earlier
observed value: this is event monitoring and not status monitoring. For
example, in the study by Forrest and Miller-Rushing (2010), it was stated
that larger plants (with better physiological conditions) bloom earlier than
smaller ones in the same population. Also, the healthiest birds lay eggs
earlier than those that are in a weaker physiological state (Forrest and Miller-Rushing, 2010).</p>
              </list-item>
              <list-item>

      <p id="d1e630">The number of observers varies greatly from year to year, reaching a peak in the 1970s, and no continuous data series from 1970 to 2018 are available for
any observation point (Fig. 7), which is required for analyses of long-term
changes and for regional studies. There are two ways to solve this problem.
The usual approach is to combine a series of observations from adjacent
observation points, as has been done in the past
(Kalvane et al., 2009). The second approach
is to calibrate the phenological model using the available observation data
set and to use, for example, gridded meteorological data (E-OBS), data of
reanalysis, or operational meteorological models for regional calculations
(Kalvāns et al., 2015; Wu et al., 2016).</p>
              </list-item>
            </list>The above-mentioned factors must be considered before using the data in our
database; however, they do not reduce the value of the database or the
applicability of the data.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><?xmltex \currentcnt{7}?><?xmltex \def\figurename{Figure}?><label>Figure 7</label><caption><p id="d1e638">Phenological calendar for Latvia – chronological sequence of
phenological phases. Phases selected with <inline-formula><mml:math id="M8" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">500</mml:mn></mml:mrow></mml:math></inline-formula> observations,
plotted as a boxplot, where the median value is the vertical line, the sides
of the boxplot are corresponding 25th and 75th quartiles, the
whiskers extend to 1.5 times the distance between the first and third
quartiles, and the dots are any remaining outliers. The right panel shows
the number of observations per year.</p></caption>
            <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://essd.copernicus.org/articles/13/4621/2021/essd-13-4621-2021-f07.png"/>

          </fig>

</sec>
</sec>
<sec id="Ch1.S3.SS3">
  <label>3.3</label><title>Applicability of phenological data: temporal changes and seasonality in the landscape</title>
      <p id="d1e666">A large amount of data, as in our case, allow one to describe chronological
changes in the landscape in general – the phenological calendar method –
and to analyse long-term data changes that serve as evidence of climate
change. This makes it possible to compare annual fluctuations in the context
of both species and region.</p>
<sec id="Ch1.S3.SS3.SSS1">
  <label>3.3.1</label><title>Seasonality in the landscape</title>
      <p id="d1e676">Phenological calendars are long-established, identifying the most important
indicator species (specific, characteristic, and easily identifiable
development phase) (Kalvāne, 2011) or describing
natural seasonal phenomena in general. The methods of creating phenological
calendars and the forms of representation differ, but their goal is to
demonstrate events in nature in chronological order.</p>
      <p id="d1e679">In this study, based on the quality of the data (phenological phases were
selected with at least 500 observations throughout Latvia), a phenological
calendar for the temporal biome has been created.</p>
      <p id="d1e682">In Latvia, snowmelt marks the beginning of the phenological season, but the
end of it is marked by leaves falling off the<?pagebreak page4629?> apple tree (<italic>Malus domestica</italic>; BBCH93). In
total, 46 phenological phases are described in the calendar. As can be seen
in Fig. 7, the spring and autumn phases show a relatively larger scattering
of values, i.e. larger interannual variation. For example, the beginning of
flowering of pioneer species (Kolářová et al.,
2014) such as hazel (<italic>Corylus avellana</italic>) and grey alder (<italic>Alnus incana</italic>; BBCH61) in Latvia may occur from the end of December to the beginning of May (Kalvāne and Kalvāns, 2021).
It should be noted that during recent years, the beginning of flowering can
already be observed in March. The timing of the summer phases is more
consistent. In general, the green-up in Latvia is observed from the end of
April to the beginning of May. As it is an area with high seasonality, which
includes a long winter period, it is reasonable that spring indicators are
recorded more often than, for example, summer or autumn phases.</p>
      <p id="d1e694">Figure 7 shows that the data coverage varies from year to year – most
observations are recorded in the 1970s, and recently the number of
observations has been declining.</p>
</sec>
<sec id="Ch1.S3.SS3.SSS2">
  <label>3.3.2</label><title>Phenological data as the representative of long-term and annual fluctuations</title>
      <p id="d1e705">Analysis of phenological trends is a generally accepted method in
bioclimatology, which characterizes both long-term and short-term changes.
Figure 8 shows the flowering of hazel (<italic>Corylus avellana</italic>) as the phenological indicator of the beginning of spring, the flowering of linden (<italic>Tilia cordata</italic>) marks the middle of summer, and the yellowing of the leaves of the silver birch (<italic>Betula pendula</italic>) in the
Baltic region (Kalvāne, 2011) is considered to be the
beginning of autumn.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8" specific-use="star"><?xmltex \currentcnt{8}?><?xmltex \def\figurename{Figure}?><label>Figure 8</label><caption><p id="d1e719">Long-term and annual phenological changes in Latvia: examples of
the beginning of the flowering of hazel (<italic>Corylus avellana</italic>, BBCH61) and linden (<italic>Tilia cordata</italic>, BBCH61)
and yellowing of the leaves of silver birch (<italic>Betula pendula</italic>, BBCH92) from 1970 to 2018;
all available observation data of the given phases are plotted.</p></caption>
            <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://essd.copernicus.org/articles/13/4621/2021/essd-13-4621-2021-f08.png"/>

          </fig>

      <p id="d1e737">Autumn phases (of both birch and other wild deciduous trees) are
characterized by large annual variations in observation points. Within 1
year, yellowing can be recorded in<?pagebreak page4630?> the range of up to 2 months.
Interestingly, after the year 2000, the observations become even more
heterogeneous – the data demonstrate a larger deviation in the observation
points. We explain this with changes in the humidity regime – in recent
years, the yellowing of the leaves due to drought has become more common
(also observed for linden, <italic>Tilia cordata</italic>). In general, the spring and summer phases tend
to occur earlier, and the characteristics of autumn trends are less
pronounced.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9" specific-use="star"><?xmltex \currentcnt{9}?><?xmltex \def\figurename{Figure}?><label>Figure 9</label><caption><p id="d1e746">Phenological changes in Latvia in the period from 1970 to 2018.
Phenological phases are grouped into taxonomic groups: separately
distinguishing developmental phases of plants such as leaf unfolding,
flowering, ripening, and leaf colouring. <inline-formula><mml:math id="M9" display="inline"><mml:mi>N</mml:mi></mml:math></inline-formula> is the number of observation
series used. Data series – data from one observation station with at least
four single-phase observations before 1987 and four after 1992.</p></caption>
            <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://essd.copernicus.org/articles/13/4621/2021/essd-13-4621-2021-f09.png"/>

          </fig>

      <p id="d1e762">Phenological observations are mentioned in the scientific literature as
bioclimatic indicators of climate change, indicating significant
phenological changes in all regions of the world. The evaluations of our
data also coincide with those mentioned in the literature. By grouping the
phenological data according to taxonomic groups and by separating the leaf
unfolding, flowering, maturation, and leaf colouring of the plant phases, it
can be seen in the created histograms that significant seasonal changes have
taken place in the landscape of Latvia (Fig. 9).</p>
      <p id="d1e765">The largest changes have been recorded for the unfolding (BBCH11) and
flowering (BBCH61) phase of plants – almost 90 % of the data included in
the database demonstrate a negative trend. The ripening (BBCH83-87) phase
also has a negative trend – most crops and wild plants ripen earlier. The
onset of the autumn phase as the leaves change colour (BBCH92) and fall
(BBCH93) shows a later trend with changes at the regional and interspecies
level. For example, on average Norway maple (<italic>Acer platanoides</italic>) and aspen (<italic>Populus tremula</italic>) tend to colour
later, while linden and birch colour earlier. Bird migration trends are
ambiguous: some bird species return earlier and some later. In the autumn
migration, for example, on average the white stork leaves earlier, while
geese migrate later (Kalvāne and
Kalvāns, 2021).</p>
      <p id="d1e774">Interestingly, the phase BBCH93 – the beginning of leaf-fall – rather
frequently occurs before phase BBCH92 – the start of leaf senescence – for
tree species such as birch, cherry, apple trees, aspen, and maple. There are
30 such cases. However empirical observations indicate that such a situation
is possible – first leaves can fall while green. It should be noted that
such cases have been recorded in the last decade, which may indicate a
change in influencing factors; for example, the risk of drought has
increased during recent years. Therefore, the sequence of the phases BBCH92
and BBCH93 is not universal and was excluded from Test 3 (Sect. 2.2).</p>
      <p id="d1e777">For the abiotic phenomena, the greatest changes have been recorded for the
first thunder; snowmelt, which occurs significantly earlier; and autumn
frosts and first snow, which occur later. Changes in agrarian activities
have been observed in those taking place in autumn, such as field ploughing
and winter sowing, which on average, are presently carried out later than
was the case in the middle of the 20th century, indicating an extension of
the season of fieldwork. In general, significant seasonal changes have
taken place across the Latvian landscape.</p>
</sec>
</sec>
</sec>
<?pagebreak page4631?><sec id="Ch1.S4">
  <label>4</label><title>Data availability</title>
      <p id="d1e790">The data presented and described in this paper are freely available to all interested at <uri>https://zenodo.org</uri> (<ext-link xlink:href="https://doi.org/10.5281/zenodo.3982086" ext-link-type="DOI">10.5281/zenodo.3982086</ext-link>, Kalvāne et al., 2020).</p>
</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <label>5</label><title>Summary and conclusions</title>
      <p id="d1e808">We have presented the historical and phenological data of volunteer
observers in Latvia for a period of almost 50 years as an open data set. Data
can primarily be used to describe the seasonal events of the temporal biome
and to analyse influencing factors.</p>
      <p id="d1e811">It should be noted that the role of phenological observations is growing. As
provided in the example publications, the application types vary; for
example, they provide a good characterization of the seasonality of the
landscape and of chronology (Fig. 7), or change of chronology due to
environmental changes (for example, the trophic mismatch between pollinators
and plant flowering, which has been extensively described; Hegland et al., 2009). Seasonality changes can
also be observed in the landscape of Latvia, especially in the early spring
phases (Fig. 8).</p>
      <p id="d1e814">Phenological data allow for the analysis of long-term and annual
fluctuations (Fig. 8), which in combination with meteorological studies
create a comprehensive climatic characterization of the territory, which has
also long been a priority for phenologists in Latvia (Sect. 3.1).
Phenology studies play an important role in the research of climate change,
because phenological data are used as bioindicators to identify changes on
regional and global scales. Satellite data are used on global modelling
scales, in the calibration of which, phenological data, as the ground truth,
play an invaluable role. The greater the number of open data on ground truth
observations available for validation, the higher the quality of the
satellite imagery product. In turn, modelling is important for the
development of agricultural and forestry adaptation strategies. Future
projections are based on the assessment of complex factors and phenological
parameters, and the inclusion of influencing factors provides a more
comprehensive and complete assessment important for third parties such as
insurance companies and decision-making bodies.</p>
      <p id="d1e817">This database is unique as it covers not only phytophenological data but
also other taxonomic groups, as well as abiotic and agricultural phenomena.
The latter have major potential applications in the Earth sciences, as well
as in the social sciences.</p>
</sec>

      
      </body>
    <back><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d1e824">GK was responsible for the study's conceptualization,
investigation, and supervision and prepared the manuscript with contributions
from all co-authors. AK designed the methodology part as well as prepared the phenological data for the database and undertook statistical analyses, programming, and visualization. AĢ undertook data curation and validation by using CRediT contributor role taxonomy.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d1e830">The authors declare that they have no conflict of interest.</p>
  </notes><notes notes-type="disclaimer"><title>Disclaimer</title>

      <p id="d1e836">Publisher's note: Copernicus Publications remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e842">Thanks are due to Ivonna Tokere for the digitization of the historical data and to
all volunteers – citizen scientists – for data collection through the
decades.</p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <p id="d1e847">This research has been supported by the ERDF postdoctoral grants (grant nos. 1.1.1.2/VIAA/2/18/265 and 1.1.1.2/VIAA/3/19/524).</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d1e853">This paper was edited by Dirk Fleischer and reviewed by José Antonio Oteros Moreno and Dirk Fleischer.</p>
  </notes><ref-list>
    <title>References</title>

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    <!--<article-title-html>Long-term phenological data set of multi-taxonomic groups, agrarian activities, and abiotic parameters from Latvia, northern Europe</article-title-html>
<abstract-html><p>A phenological data set collected by citizen scientists from 1970 to 2018 in
Latvia is presented, comprising almost 47&thinsp;000 individual observations of
eight taxonomical groups, in addition to agrarian activities and abiotic
parameters, covering in total 159 different phenological phases. These
original data published offline in annual issues of the Nature and History
Calendar (in Latvian, <i>Dabas un vēstures kalendārs</i>) have been digitized, harmonized, and geo-referenced.</p><p>Overall, the possible use of such data is extensive, as phenological data
are excellent bioindicators for characterizing climate change and can be
used for the elaboration of adaptation strategies in agriculture, forestry,
and environmental monitoring. The data can also be used in
cultural–historical research; for example, the database includes data on
sugar beet and maize, the cultivation of which was imposed on collective
farms during the Soviet period. Thus, such data are not only important in
the Earth sciences but can also be applied to the social sciences.</p><p>The data significantly complement current knowledge on European phenology,
especially regarding northern regions and the temporal biome. The data here
cover two climate reference periods (1971–2000; 1981–2010), in addition to
more recent years, and are particularly important in monitoring the effects
of climate change. The database can be considered the largest open
phenological data set in the Baltics.</p><p>The data are freely available to all interested at <a href="https://doi.org/10.5281/zenodo.3982086" target="_blank">https://doi.org/10.5281/zenodo.3982086</a> (Kalvāne et al., 2020).</p></abstract-html>
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